orfm: new package (#4769)

var/spack/repos/builtin/packages/orfm/package.py

@@ -0,0 +1,37 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Orfm(AutotoolsPackage):
+    """A simple and not slow open reading frame (ORF) caller. No bells or
+       whistles like frameshift detection, just a straightforward goal of
+       returning a FASTA file of open reading frames over a certain length
+       from a FASTA/Q file of nucleotide sequences."""
+
+    homepage = "https://github.com/wwood/OrfM"
+    url      = "https://github.com/wwood/OrfM/releases/download/v0.7.1/orfm-0.7.1.tar.gz"
+
+    version('0.7.1', 'fcf18283a028cea2af90663a76a73a2a')