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Add py-meep package and dependencies

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This commit is contained in:
Adam J. Stewart 2016-07-01 16:30:11 -05:00
parent cc3fc2ba4c
commit 7e53f4328f
12 changed files with 580 additions and 31 deletions
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52
var/spack/repos/builtin/packages/gc/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Gc(Package):
"""The Boehm-Demers-Weiser conservative garbage collector is a garbage
collecting replacement for C malloc or C++ new."""
homepage = "http://www.hboehm.info/gc/"
url = "http://www.hboehm.info/gc/gc_source/gc-7.4.4.tar.gz"
version('7.4.4', '96d18b0448a841c88d56e4ab3d180297')
variant('libatomic-ops', default=True, description='Use external libatomic-ops')
depends_on('libatomic-ops', when='+libatomic-ops')
def install(self, spec, prefix):
config_args = [
'--prefix={0}'.format(prefix),
'--with-libatomic-ops={0}'.format(
'yes' if '+libatomic-ops' in spec else 'no')
]
configure(*config_args)
make()
make('check')
make('install')

96
var/spack/repos/builtin/packages/gettext/package.py
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##############################################################################
from spack import *
class Gettext(Package):
"""GNU internationalization (i18n) and localization (l10n) library."""
homepage = "https://www.gnu.org/software/gettext/"
url = "http://ftpmirror.gnu.org/gettext/gettext-0.19.7.tar.xz"
version('0.19.7', 'f81e50556da41b44c1d59ac93474dca5')
version('0.19.8.1', 'df3f5690eaa30fd228537b00cb7b7590')
version('0.19.7', 'f81e50556da41b44c1d59ac93474dca5')
# Recommended variants
variant('libiconv', default=True, description='Use libiconv')
variant('curses', default=True, description='Use libncurses')
variant('libxml2', default=True, description='Use libxml2')
variant('git', default=True, description='Enable git support')
variant('tar', default=True, description='Enable tar support')
variant('gzip', default=True, description='Enable gzip support')
variant('bzip2', default=True, description='Enable bzip2 support')
variant('xz', default=True, description='Enable xz support')
# Optional variants
variant('libunistring', default=False, description='Use libunistring')
# Recommended dependencies
depends_on('libiconv', when='+libiconv')
depends_on('ncurses', when='+curses')
depends_on('libxml2', when='+libxml2')
# Java runtime and compiler (e.g. GNU gcj or kaffe)
# C# runtime and compiler (e.g. pnet or mono)
depends_on('git@1.6:', when='+git')
depends_on('tar', when='+tar')
depends_on('gzip', when='+gzip')
depends_on('bzip2', when='+bzip2')
depends_on('xz', when='+xz')
# Optional dependencies
# depends_on('glib') # circular dependency?
# depends_on('libcroco@0.6.1:')
depends_on('libunistring', when='+libunistring')
# depends_on('cvs')
def install(self, spec, prefix):
options = ['--disable-dependency-tracking',
'--disable-silent-rules',
'--disable-debug',
'--prefix=%s' % prefix,
'--with-included-gettext',
'--with-included-glib',
'--with-included-libcroco',
'--with-included-libunistring',
'--with-emacs',
'--with-lispdir=%s/emacs/site-lisp/gettext' % prefix.share,
'--disable-java',
'--disable-csharp',
'--without-git', # Don't use VCS systems to create these archives
'--without-cvs',
'--without-xz']
config_args = [
'--prefix={0}'.format(prefix),
'--disable-java',
'--disable-csharp',
'--with-included-glib',
'--with-included-gettext',
'--with-included-libcroco',
'--without-emacs',
'--with-lispdir=%s/emacs/site-lisp/gettext' % prefix.share,
'--without-cvs'
]
configure(*options)
if '+libiconv' in spec:
config_args.append('--with-libiconv-prefix={0}'.format(
spec['libiconv'].prefix))
else:
config_args.append('--without-libiconv-prefix')
if '+curses' in spec:
config_args.append('--with-ncurses-prefix={0}'.format(
spec['ncurses'].prefix))
else:
config_args.append('--disable-curses')
if '+libxml2' in spec:
config_args.append('--with-libxml2-prefix={0}'.format(
spec['libxml2'].prefix))
else:
config_args.append('--with-included-libxml')
if '+git' not in spec:
config_args.append('--without-git')
if '+bzip2' not in spec:
config_args.append('--without-bzip2')
if '+xz' not in spec:
config_args.append('--without-xz')
if '+libunistring' in spec:
config_args.append('--with-libunistring-prefix={0}'.format(
spec['libunistring'].prefix))
else:
config_args.append('--with-included-libunistring')
configure(*config_args)
make()
make("install")

12
var/spack/repos/builtin/packages/gmp/package.py
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##############################################################################
from spack import *
class Gmp(Package):
"""GMP is a free library for arbitrary precision arithmetic,
operating on signed integers, rational numbers, and
floating-point numbers."""
"""GMP is a free library for arbitrary precision arithmetic, operating
on signed integers, rational numbers, and floating-point numbers."""
homepage = "https://gmplib.org"
url = "https://gmplib.org/download/gmp/gmp-6.0.0a.tar.bz2"
version('6.1.0' , '86ee6e54ebfc4a90b643a65e402c4048')
version('6.1.1', '4c175f86e11eb32d8bf9872ca3a8e11d')
version('6.1.0', '86ee6e54ebfc4a90b643a65e402c4048')
version('6.0.0a', 'b7ff2d88cae7f8085bd5006096eed470')
version('6.0.0' , '6ef5869ae735db9995619135bd856b84')
version('6.0.0', '6ef5869ae735db9995619135bd856b84')
depends_on("m4", type='build')

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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Guile(Package):
"""Guile is designed to help programmers create flexible applications
that can be extended by users or other programmers with plug-ins,
modules, or scripts."""
homepage = "https://www.gnu.org/software/guile/"
url = "ftp://ftp.gnu.org/gnu/guile/guile-2.0.11.tar.gz"
version('2.0.11', 'e532c68c6f17822561e3001136635ddd')
variant('readline', default=True, description='Use the readline library')
depends_on('gmp@4.2:')
depends_on('libiconv')
depends_on('gettext')
depends_on('libtool@1.5.6:')
depends_on('libunistring@0.9.3:')
depends_on('gc@7.0:')
depends_on('libffi')
depends_on('readline', when='+readline')
depends_on('pkg-config')
def install(self, spec, prefix):
configure('--prefix={0}'.format(prefix))
make()
make('install')

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var/spack/repos/builtin/packages/harminv/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Harminv(Package):
"""Harminv is a free program (and accompanying library) to solve the
problem of harmonic inversion - given a discrete-time, finite-length
signal that consists of a sum of finitely-many sinusoids (possibly
exponentially decaying) in a given bandwidth, it determines the
frequencies, decay constants, amplitudes, and phases of those sinusoids."""
homepage = "http://ab-initio.mit.edu/wiki/index.php/Harminv"
url = "http://ab-initio.mit.edu/harminv/harminv-1.4.tar.gz"
version('1.4', 'b95e24a9bc7e07d3d2202d1605e9e86f')
depends_on('blas')
depends_on('lapack')
def install(self, spec, prefix):
config_args = [
'--prefix={0}'.format(prefix),
'--with-blas={0}'.format(spec['blas'].prefix.lib),
'--with-lapack={0}'.format(spec['lapack'].prefix.lib)
]
configure(*config_args)
make()
make('install')

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var/spack/repos/builtin/packages/libatomic-ops/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class LibatomicOps(Package):
"""This package provides semi-portable access to hardware-provided
atomic memory update operations on a number architectures."""
homepage = "https://github.com/ivmai/libatomic_ops"
url = "http://www.hboehm.info/gc/gc_source/libatomic_ops-7.4.4.tar.gz"
version('7.4.4', '426d804baae12c372967a6d183e25af2')
def install(self, spec, prefix):
configure('--prefix={0}'.format(prefix))
make()
make('install')

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var/spack/repos/builtin/packages/libctl/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Libctl(Package):
"""libctl is a free Guile-based library implementing flexible
control files for scientific simulations."""
homepage = "http://ab-initio.mit.edu/wiki/index.php/Libctl"
url = "http://ab-initio.mit.edu/libctl/libctl-3.2.2.tar.gz"
version('3.2.2', '5fd7634dc9ae8e7fa70a68473b9cbb68')
depends_on('guile')
def install(self, spec, prefix):
configure('--prefix={0}'.format(prefix)
'GUILE={0}'.format(spec['guile'].prefix))
#GUILE_CONFIG=/path/to/guile-config
make()
make('check')
make('install')
make('installcheck')

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var/spack/repos/builtin/packages/libiconv/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Libiconv(Package):
"""GNU libiconv provides an implementation of the iconv() function
and the iconv program for character set conversion."""
homepage = "https://www.gnu.org/software/libiconv/"
url = "http://ftp.gnu.org/pub/gnu/libiconv/libiconv-1.14.tar.gz"
version('1.14', 'e34509b1623cec449dfeb73d7ce9c6c6')
def install(self, spec, prefix):
configure('--prefix={0}'.format(prefix))
make()
make('install')

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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Libunistring(Package):
"""This library provides functions for manipulating Unicode strings
and for manipulating C strings according to the Unicode standard."""
homepage = "https://www.gnu.org/software/libunistring/"
url = "http://ftp.gnu.org/gnu/libunistring/libunistring-0.9.6.tar.xz"
version('0.9.6', 'cb09c398020c27edac10ca590e9e9ef3')
depends_on('libiconv')
def install(self, spec, prefix):
configure('--prefix={0}'.format(prefix),
'--with-libiconv-prefix={0}'.format(spec['libiconv'].prefix))
make()
make('install')

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var/spack/repos/builtin/packages/meep/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Meep(Package):
"""Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation
software package developed at MIT to model electromagnetic systems."""
homepage = "http://ab-initio.mit.edu/wiki/index.php/Meep"
version('1.3', '18a5b9e18008627a0411087e0bb60db5')
version('1.1.1', '415e0cd312b6caa22b5dd612490e1ccf')
variant('blas', default=True, description='Enable BLAS support')
variant('lapack', default=True, description='Enable LAPACK support')
variant('harminv', default=True, description='Enable Harminv support')
variant('guile', default=True, description='Enable Guilde support')
variant('libctl', default=True, description='Enable libctl support')
variant('mpi', default=True, description='Enable MPI support')
variant('hdf5', default=True, description='Enable HDF5 support')
# Recommended dependencies
depends_on('blas', when='+blas')
depends_on('lapack', when='+lapack')
depends_on('harminv', when='+harminv')
depends_on('guile', when='+guile')
depends_on('libctl@3.2:', when='+libctl')
depends_on('mpi', when='+mpi')
depends_on('hdf5', when='+hdf5')
def url_for_version(self, version):
base_url = "http://ab-initio.mit.edu/meep"
if version == Version('1.3'):
return "{0}/meep-{1}.tar.gz".format(base_url, version)
else:
return "{0}/old/meep-{1}.tar.gz".format(base_url, version)
def install(self, spec, prefix):
config_args = ['--prefix={0}'.format(prefix)]
if '+blas' in spec:
config_args.append('--with-blas={0}'.format(
spec['blas'].prefix.lib))
else:
config_args.append('--without-blas')
if '+lapack' in spec:
config_args.append('--with-lapack={0}'.format(
spec['lapack'].prefix.lib))
else:
config_args.append('--without-lapack')
if '+libctl' in spec:
config_args.append('--with-libctl={0}'.format(
spec['libctl'].prefix))
else:
config_args.append('--without-libctl')
if '+mpi' in spec:
config_args.append('--with-mpi')
else:
config_args.append('--without-mpi')
if '+hdf5' in spec:
config_args.append('--with-hdf5')
else:
config_args.append('--without-hdf5')
configure(*config_args)
make()
make('check')
make('install')

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var/spack/repos/builtin/packages/pkg-config/package.py
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##############################################################################
from spack import *
class PkgConfig(Package):
"""pkg-config is a helper tool used when compiling applications and libraries"""
"""pkg-config is a helper tool used when compiling applications
and libraries"""
homepage = "http://www.freedesktop.org/wiki/Software/pkg-config/"
url = "http://pkgconfig.freedesktop.org/releases/pkg-config-0.28.tar.gz"
version('0.28', 'aa3c86e67551adc3ac865160e34a2a0d')
version('0.29.1', 'f739a28cae4e0ca291f82d1d41ef107d')
version('0.28', 'aa3c86e67551adc3ac865160e34a2a0d')
parallel = False
def install(self, spec, prefix):
configure("--prefix=%s" %prefix,
"--enable-shared",
"--with-internal-glib") # There's a bootstrapping problem here;
# glib uses pkg-config as well, so
# break the cycle by using the internal
# glib.
configure("--prefix={0}".format(prefix),
"--enable-shared",
# There's a bootstrapping problem here;
# glib uses pkg-config as well, so break
# the cycle by using the internal glib.
"--with-internal-glib")
make()
make("install")

54
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyMeep(Package):
"""Python-meep is a wrapper around libmeep. It allows the scripting of
Meep-simulations with Python"""
homepage = "https://launchpad.net/python-meep"
url = "https://launchpad.net/python-meep/1.4/1.4/+download/python-meep-1.4.2.tar"
version('1.4.2', 'f8913542d18b0dda92ebc64f0a10ce56')
variant('mpi', default=True, description='Enable MPI support')
extends('python')
depends_on('meep@1.1.1') # must be compiled with -fPIC
depends_on('swig@1.3.39:')
depends_on('py-numpy')
depends_on('py-scipy')
depends_on('py-matplotlib')
depends_on('mpi', when='+mpi') # OpenMPI 1.3.3 is recommended
# depends_on('hdf5+mpi', when='+mpi') # ???
def install(self, spec, prefix):
setup = 'setup-mpi.py' if '+mpi' in spec else 'setup.py'
python(setup, 'clean', '--all')
python(setup, 'build_ext')
python(setup, 'install', '--prefix={0}'.format(prefix))
python(setup, 'bdist')