hmmer: added version 3.2.1 & updated URL (#8787)
Add HMMER 3.2.1 and updated URL then removed url_for_version function as no longer required - all HMMER downloads available from updated URL.
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@ -31,8 +31,9 @@ class Hmmer(Package):
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probabilistic models called profile hidden Markov models (profile HMMs).
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probabilistic models called profile hidden Markov models (profile HMMs).
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"""
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"""
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homepage = 'http://www.hmmer.org'
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homepage = 'http://www.hmmer.org'
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url = 'http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2.tar.gz'
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url = 'http://eddylab.org/software/hmmer/hmmer-3.2.1.tar.gz'
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version('3.2.1', '4e0ad5ed45462d4e36807d21e6d82b69')
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version('3.1b2', 'c8c141018bc0ccd7fc37b33f2b945d5f')
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version('3.1b2', 'c8c141018bc0ccd7fc37b33f2b945d5f')
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version('3.0', '4cf685f3bc524ba5b5cdaaa070a83588')
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version('3.0', '4cf685f3bc524ba5b5cdaaa070a83588')
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version('2.4i', 'dab234c87e026ac1de942450750acd20')
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version('2.4i', 'dab234c87e026ac1de942450750acd20')
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@ -45,14 +46,6 @@ class Hmmer(Package):
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depends_on('mpi', when='+mpi')
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depends_on('mpi', when='+mpi')
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depends_on('gsl', when='+gsl')
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depends_on('gsl', when='+gsl')
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def url_for_version(self, version):
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base_url = 'http://eddylab.org/software'
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if version >= Version('3.0'):
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return '{0}/hmmer3/{1}/hmmer-{1}.tar.gz'.format(base_url, version)
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else:
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return '{0}/hmmer/{1}/hmmer-{1}.tar.gz'.format(base_url, version)
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def install(self, spec, prefix):
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def install(self, spec, prefix):
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configure_args = [
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configure_args = [
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'--prefix={0}'.format(prefix)
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'--prefix={0}'.format(prefix)
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