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hmmer: added version 3.2.1 & updated URL (#8787)

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Add HMMER 3.2.1 and updated URL then removed url_for_version function as no longer required - all HMMER downloads available from updated URL.
This commit is contained in:
Simon Flood 2018-07-26 16:07:55 +01:00 committed by Adam J. Stewart
parent 643a4fbb59
commit 80741bc427
1 changed files with 2 additions and 9 deletions
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11
var/spack/repos/builtin/packages/hmmer/package.py
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@ -31,8 +31,9 @@ class Hmmer(Package):
probabilistic models called profile hidden Markov models (profile HMMs). probabilistic models called profile hidden Markov models (profile HMMs).
""" """
homepage = 'http://www.hmmer.org' homepage = 'http://www.hmmer.org'
url = 'http://eddylab.org/software/hmmer3/3.1b2/hmmer-3.1b2.tar.gz' url = 'http://eddylab.org/software/hmmer/hmmer-3.2.1.tar.gz'
version('3.2.1', '4e0ad5ed45462d4e36807d21e6d82b69')
version('3.1b2', 'c8c141018bc0ccd7fc37b33f2b945d5f') version('3.1b2', 'c8c141018bc0ccd7fc37b33f2b945d5f')
version('3.0', '4cf685f3bc524ba5b5cdaaa070a83588') version('3.0', '4cf685f3bc524ba5b5cdaaa070a83588')
version('2.4i', 'dab234c87e026ac1de942450750acd20') version('2.4i', 'dab234c87e026ac1de942450750acd20')
@ -45,14 +46,6 @@ class Hmmer(Package):
depends_on('mpi', when='+mpi') depends_on('mpi', when='+mpi')
depends_on('gsl', when='+gsl') depends_on('gsl', when='+gsl')
def url_for_version(self, version):
base_url = 'http://eddylab.org/software'
if version >= Version('3.0'):
return '{0}/hmmer3/{1}/hmmer-{1}.tar.gz'.format(base_url, version)
else:
return '{0}/hmmer/{1}/hmmer-{1}.tar.gz'.format(base_url, version)
def install(self, spec, prefix): def install(self, spec, prefix):
configure_args = [ configure_args = [
'--prefix={0}'.format(prefix) '--prefix={0}'.format(prefix)