New neuroscience packages: py-bmtk, py-neurotools (#34464)

* Add py-bmtk and py-neurotools

* py-bmtk: version bump

* [@spackbot] updating style on behalf of heerener

* Maybe the copyright needs to be extended to 2022 for the check to pass

* Process review remarks

* Update var/spack/repos/builtin/packages/py-neurotools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

var/spack/repos/builtin/packages/py-bmtk/package.py

@@ -0,0 +1,28 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyBmtk(PythonPackage):
+    """The Brain Modeling Toolkit"""
+
+    homepage = "https://github.com/AllenInstitute/bmtk"
+    pypi = "bmtk/bmtk-1.0.5.tar.gz"
+
+    version("1.0.7", sha256="11e85098cf3c940a3d64718645f4a24ee13c8a47438ef5d28e054cb27ee01702")
+    version("1.0.5", sha256="e0cb47b334467a6d124cfb99bbc67cc88f39f0291f4c39929f50d153130642a4")
+
+    depends_on("py-setuptools", type="build")
+
+    depends_on("py-jsonschema", type=("build", "run"))
+    depends_on("py-pandas", type=("build", "run"))
+    depends_on("py-numpy", type=("build", "run"))
+    depends_on("py-six", type=("build", "run"))
+    depends_on("py-h5py", type=("build", "run"))
+    depends_on("py-matplotlib", type=("build", "run"))
+    depends_on("py-scipy", type=("build", "run"))
+    depends_on("py-scikit-image", type=("build", "run"))
+    depends_on("py-sympy", type=("build", "run"))

var/spack/repos/builtin/packages/py-neurotools/neurotools-0.3.1.patch

@@ -0,0 +1,22 @@
+diff --git a/src/stgen.py b/src/stgen.py
+index b818ea5..3cb45e6 100644
+--- a/src/stgen.py
++++ b/src/stgen.py
+@@ -227,7 +227,7 @@ class StGen:
+             number = min(5+numpy.ceil(2*n),100)
+
+         if number > 0:
+-            isi = self.rng.exponential(1.0/rate, number)*1000.0
++            isi = self.rng.exponential(1.0/rate, int(number)) * 1000.0
+             if number > 1:
+                 spikes = numpy.add.accumulate(isi)
+             else:
+@@ -301,7 +301,7 @@ class StGen:
+             number = min(5+numpy.ceil(2*n),100)
+
+         if number > 0:
+-            isi = self.rng.gamma(a, b, number)*1000.0
++            isi = self.rng.gamma(a, b, int(number))*1000.0
+             if number > 1:
+                 spikes = numpy.add.accumulate(isi)
+             else:

var/spack/repos/builtin/packages/py-neurotools/package.py

@@ -0,0 +1,25 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyNeurotools(PythonPackage):
+    """A collection of tools for representing and anlyzing neuroscientific
+    data."""
+
+    homepage = "http://neuralensemble.org/NeuroTools"
+    pypi = "neurotools/NeuroTools-0.3.1.tar.gz"
+
+    version("0.3.1", sha256="a459420fc0e9ff6b59af28716ddb0c75d11a63b8db80a5f4844e0d7a90c2c653")
+
+    depends_on("py-setuptools", type="build")
+    depends_on("py-scipy", type=("build", "run"))
+    depends_on("py-numpy", type=("build", "run"))
+    depends_on("py-matplotlib", type=("build", "run"))
+    depends_on("py-tables", type=("build", "run"))
+    depends_on("py-pyaml", type=("build", "run"))
+
+    patch("neurotools-0.3.1.patch", when="@0.3.1")