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prokka: new package at v1.14.6 (#16282)

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Justin S 2020-05-12 03:09:01 -05:00 committed by GitHub
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commit 80e7a61597
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var/spack/repos/builtin/packages/prokka/package.py Normal file
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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Prokka(Package):
"""Prokka is a software tool to annotate bacterial, archaeal and viral
genomes quickly and produce standards-compliant output files."""
homepage = "https://github.com/tseemann/prokka"
url = "https://github.com/tseemann/prokka/archive/v1.14.5.tar.gz"
version('1.14.6', sha256='f730b5400ea9e507bfe6c5f3d22ce61960a897195c11571c2e1308ce2533faf8')
depends_on('perl', type='run')
depends_on('perl-bioperl', type='run')
depends_on('perl-xml-simple', type='run')
depends_on('perl-bio-searchio-hmmer', type='run')
depends_on('hmmer', type='run')
depends_on('blast-plus', type='run')
depends_on('prodigal', type='run')
depends_on('tbl2asn', type='run')
def install(self, spec, prefix):
install_tree('bin', prefix.bin)
install_tree('binaries', prefix.binaries)
install_tree('db', prefix.db)
install_tree('doc', prefix.doc)