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motioncor2: add v1.6.4 (#42380)

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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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George Young 2024-02-05 13:32:38 +00:00 committed by GitHub
parent 473347df41
commit 8190903821
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1 changed files with 17 additions and 8 deletions
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var/spack/repos/builtin/packages/motioncor2/package.py
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@ -20,6 +20,7 @@ class Motioncor2(Package):
homepage = "http://msg.ucsf.edu/em/software" homepage = "http://msg.ucsf.edu/em/software"
manual_download = True manual_download = True
version("1.6.4", sha256="28bb3e6477abf34fe41a78bcb9da9d77d08e2e89ecd41240fab085a308e6c498")
version("1.4.7", sha256="8c33969b10916835b55f14f3c370f67ebe5c4b2a9df9ec487c5251710f038e6b") version("1.4.7", sha256="8c33969b10916835b55f14f3c370f67ebe5c4b2a9df9ec487c5251710f038e6b")
# None of the below are available for download # None of the below are available for download
@ -41,18 +42,26 @@ class Motioncor2(Package):
deprecated=True, deprecated=True,
) )
depends_on("patchelf", type="build")
depends_on("cuda@10.2,11.1:11.8,12.1", type="run")
depends_on("libtiff", type="run")
def url_for_version(self, version): def url_for_version(self, version):
return "file://{0}/MotionCor2_{1}.zip".format(os.getcwd(), version) return "file://{0}/MotionCor2_{1}.zip".format(os.getcwd(), version)
depends_on("cuda@10.2,11.1:11.5", type="run")
depends_on("libtiff", type="run")
def install(self, spec, prefix): def install(self, spec, prefix):
cuda_version = spec["cuda"].version.up_to(2).joined cuda_version = spec["cuda"].version.up_to(2).joined
mkdirp(prefix.bin) mkdirp(prefix.bin)
with working_dir("MotionCor2_{0}".format(spec.version)): install(
install( "MotionCor2_{0}_Cuda{1}_*".format(spec.version, cuda_version),
"MotionCor2_{0}_Cuda{1}_*".format(spec.version, cuda_version), join_path(prefix.bin, "MotionCor2"),
join_path(prefix.bin, "MotionCor2"), )
)
@run_after("install")
def ensure_rpaths(self):
patchelf = which("patchelf")
patchelf(
"--set-rpath", self.spec["cuda"].prefix.lib64, join_path(self.prefix.bin, "MotionCor2")
)