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transabyss: new package (#4892)

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* transabyss: new package and dependencies

* fixed build deps in igraph and version conflict spec in abyss

* fixed versioning stuff and package structure

*  fixed dep type

* fixing dep type for real this time
This commit is contained in:
Audrey Thoma
2017-08-07 15:42:49 -05:00
committed by Adam J. Stewart
parent 82463f1fd6
commit 825c3c68a3
4 changed files with 123 additions and 2 deletions
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6
var/spack/repos/builtin/packages/abyss/package.py
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@@ -31,12 +31,14 @@ class Abyss(AutotoolsPackage):
is useful for assembling genomes up to 100 Mbases in size."""
homepage = "http://www.bcgsc.ca/platform/bioinfo/software/abyss"
url = "http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases/2.0.2/abyss-2.0.2.tar.gz"
url = "https://github.com/bcgsc/abyss/archive/2.0.2.tar.gz"
version('2.0.2', '1623f55ad7f4586e80f6e74b1f27c798')
version('1.5.2', '10d6d72d1a915e618d41a5cbbcf2364c')
depends_on('mpi')
depends_on('boost@:1.50.0,1.53.0:')
depends_on('boost@:1.50.0,1.53.0:', when='@2.0.2:')
depends_on('boost@:1.50.0,1.53.0:1.59.0', when='@:1.5.2')
depends_on('sparsehash')
depends_on('sqlite')