pipelines: spack ci command with env-based workflow (#12854)
Rework Spack's continuous integration workflow to be environment-based.
- Add the `spack ci` command, which replaces the many scripts in `bin/`
- `spack ci` decouples the CI workflow from the spack instance:
- CI is defined in a spack environment
- environment is in its own (single) git repository, separate from Spack
- spack instance used to run the pipeline is up to the user
- A new `gitlab-ci` section in environments allows users to configure how
specs in the environment should be mapped to runners
- Compilers can be bootstrapped in the new pipeline workflow
- Add extensive documentation on pipelines (see `pipelines.rst` for further details)
- Add extensive tests for pipeline code
This commit is contained in:
Scott Wittenburg
committed by
Todd Gamblin
Todd Gamblin
parent
4d794d63b5
commit
8283d87f6a
@@ -1,91 +0,0 @@
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#! /usr/bin/env bash
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# Remember where we are initially, it's the repo cloned by gitlab-ci
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original_directory=$(pwd)
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. "${original_directory}/share/spack/setup-env.sh"
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# Create a temporary working directory
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temp_dir=$(mktemp -d)
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trap 'rm -rf "$temp_dir"' INT TERM QUIT EXIT
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if [ -z "${DOWNSTREAM_CI_REPO}" ] ; then
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echo "ERROR: missing variable: DOWNSTREAM_CI_REPO" >&2
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exit 1
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fi
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if [ -z "${SPACK_RELEASE_ENVIRONMENT_PATH}" ] ; then
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echo "ERROR: missing variable: SPACK_RELEASE_ENVIRONMENT_PATH" >&2
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exit 1
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fi
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if [ -z "${CDASH_AUTH_TOKEN}" ] ; then
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echo "WARNING: missing variable: CDASH_AUTH_TOKEN" >&2
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else
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token_file="${temp_dir}/cdash_auth_token"
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echo ${CDASH_AUTH_TOKEN} > ${token_file}
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fi
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if [ -z "${SPACK_RELEASE_ENVIRONMENT_REPO}" ] ; then
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echo "Assuming spack repo contains environment" >&2
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env_repo_dir=${original_directory}
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else
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echo "Cloning ${SPACK_RELEASE_ENVIRONMENT_REPO} into ${temp_dir}/envrepo" >&2
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cd ${temp_dir}
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git clone ${SPACK_RELEASE_ENVIRONMENT_REPO} envrepo
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cd envrepo
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env_repo_dir=$(pwd)
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fi
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current_branch="$CI_COMMIT_REF_NAME"
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# Because want to see generated gitlab-ci file as an artifact,
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# we need to write it within the spack repo cloned by gitlab-ci.
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gen_ci_dir="${original_directory}/ci-generation"
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gen_ci_file="${gen_ci_dir}/.gitlab-ci.yml"
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mkdir -p ${gen_ci_dir}
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env_dir="${env_repo_dir}/${SPACK_RELEASE_ENVIRONMENT_PATH}"
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if [ ! -f "${env_dir}/spack.yaml" ] ; then
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echo "ERROR: Cannot find spack environment file in ${env_dir}"
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exit 1
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fi
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cd $env_dir
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# The next commands generates the .gitlab-ci.yml (and optionally creates a
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# buildgroup in cdash)
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RELEASE_JOBS_ARGS=("--output-file" "${gen_ci_file}")
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if [ ! -z "${token_file}" ]; then
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RELEASE_JOBS_ARGS+=("--cdash-credentials" "${token_file}")
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fi
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spack release-jobs "${RELEASE_JOBS_ARGS[@]}"
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if [[ $? -ne 0 ]]; then
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echo "spack release-jobs command failed"
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exit 1
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fi
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cd "$original_directory"
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mv .git "$temp_dir/original-git-dir"
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git init .
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git config user.email "robot@spack.io"
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git config user.name "Spack Build Bot"
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cp ${gen_ci_file} "${original_directory}/.gitlab-ci.yml"
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git add .
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echo "git commit"
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commit_message="Auto-generated commit testing"
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commit_message="${commit_message} ${current_branch} (${CI_COMMIT_SHA})"
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git commit --message="${commit_message}"
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echo "git push"
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git remote add origin "$DOWNSTREAM_CI_REPO"
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git push --force origin "master:multi-ci-${current_branch}"
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rm -rf .git
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mv "$temp_dir/original-git-dir" .git
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git reset --hard HEAD
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@@ -1,13 +0,0 @@
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#!/bin/bash
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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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set -x
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SPACK_BIN_DIR="${CI_PROJECT_DIR}/bin"
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export PATH="${SPACK_BIN_DIR}:${PATH}"
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spack buildcache update-index -d "$MIRROR_URL"
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@@ -1,399 +0,0 @@
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#!/bin/bash
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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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###
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### This script represents a gitlab-ci job, corresponding to a single release
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### spec. As such this script must first decide whether or not the spec it
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### has been assigned is up to date on the remote binary mirror. If it is
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### not (i.e. the source code has changed in a way that caused a change in the
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### full_hash of the spec), this script will build the package, create a
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### binary cache for it, and then push all related files to the remote binary
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### mirror. This script also optionally communicates with a remote CDash
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### instance to share status on the package build process.
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###
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### The following environment variables are (possibly) used within this script
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### in order for the various elements function properly.
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###
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### First are two defaults we rely on from gitlab:
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###
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### CI_PROJECT_DIR
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### CI_JOB_NAME
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###
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### The following must be set up in the variables section of gitlab:
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###
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### AWS_ACCESS_KEY_ID
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### AWS_SECRET_ACCESS_KEY
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### SPACK_SIGNING_KEY
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###
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### SPACK_S3_UPLOAD_MIRROR_URL // only required in the short term for the cloud case
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###
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### The following variabes are defined by the ci generation process and are
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### required:
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###
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### SPACK_ENABLE_CDASH
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### SPACK_ROOT_SPEC
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### SPACK_MIRROR_URL
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### SPACK_JOB_SPEC_PKG_NAME
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### SPACK_COMPILER_ACTION
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###
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### Finally, these variables are optionally defined by the ci generation
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### process, and may or may not be present:
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###
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### SPACK_CDASH_BASE_URL
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### SPACK_CDASH_PROJECT
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### SPACK_CDASH_PROJECT_ENC
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### SPACK_CDASH_BUILD_NAME
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### SPACK_CDASH_SITE
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### SPACK_RELATED_BUILDS
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### SPACK_JOB_SPEC_BUILDGROUP
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###
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shopt -s expand_aliases
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export FORCE_UNSAFE_CONFIGURE=1
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TEMP_DIR="${CI_PROJECT_DIR}/jobs_scratch_dir"
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JOB_LOG_DIR="${TEMP_DIR}/logs"
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SPEC_DIR="${TEMP_DIR}/specs"
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LOCAL_MIRROR="${CI_PROJECT_DIR}/local_mirror"
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BUILD_CACHE_DIR="${LOCAL_MIRROR}/build_cache"
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SPACK_BIN_DIR="${CI_PROJECT_DIR}/bin"
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if [ "${SPACK_ENABLE_CDASH}" == "True" ] ; then
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CDASH_UPLOAD_URL="${SPACK_CDASH_BASE_URL}/submit.php?project=${SPACK_CDASH_PROJECT_ENC}"
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DEP_JOB_RELATEBUILDS_URL="${SPACK_CDASH_BASE_URL}/api/v1/relateBuilds.php"
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declare -a JOB_DEPS_PKG_NAMES
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fi
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export SPACK_ROOT=${CI_PROJECT_DIR}
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# export PATH="${SPACK_BIN_DIR}:${PATH}"
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export GNUPGHOME="${CI_PROJECT_DIR}/opt/spack/gpg"
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. "${CI_PROJECT_DIR}/share/spack/setup-env.sh"
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mkdir -p ${JOB_LOG_DIR}
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mkdir -p ${SPEC_DIR}
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cleanup() {
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set +x
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if [ -z "$exit_code" ] ; then
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exit_code=$1
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if [ -z "$exit_code" ] ; then
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exit_code=0
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fi
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restore_io
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if [ "$( type -t finalize )" '=' 'function' ] ; then
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finalize "$JOB_LOG_DIR/cdash_log.txt"
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fi
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# We can clean these out later on, once we have a good sense for
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# how the logging infrastructure is working
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# rm -rf "$JOB_LOG_DIR"
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fi
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\exit $exit_code
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}
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alias exit='cleanup'
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begin_logging() {
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trap "cleanup 1; \\exit \$exit_code" INT TERM QUIT
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trap "cleanup 0; \\exit \$exit_code" EXIT
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rm -rf "$JOB_LOG_DIR/cdash_log.txt"
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# NOTE: Here, some redirects are set up
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exec 3>&1 # fd 3 is now a dup of stdout
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exec 4>&2 # fd 4 is now a dup of stderr
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# stdout and stderr are joined and redirected to the log
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exec &> "$JOB_LOG_DIR/cdash_log.txt"
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set -x
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}
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restore_io() {
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exec >&-
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exec 2>&-
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exec >&3
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exec 2>&4
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exec 3>&-
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exec 4>&-
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}
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finalize() {
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# If you define a finalize function:
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# - it will always be called at the very end of the script
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# - the log file will be passed in as the first argument, and
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# - the code in this function will not be logged.
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echo "The full log file is located at $1"
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# TODO: send this log data to cdash!
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}
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check_error()
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{
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local last_exit_code=$1
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local last_cmd=$2
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if [[ ${last_exit_code} -ne 0 ]]; then
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echo "${last_cmd} exited with code ${last_exit_code}"
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echo "TERMINATING JOB"
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exit 1
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else
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echo "${last_cmd} completed successfully"
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fi
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}
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extract_build_id()
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{
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LINES_TO_SEARCH=$1
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regex="buildSummary\.php\?buildid=([[:digit:]]+)"
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SINGLE_LINE_OUTPUT=$(echo ${LINES_TO_SEARCH} | tr -d '\n')
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if [[ ${SINGLE_LINE_OUTPUT} =~ ${regex} ]]; then
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echo "${BASH_REMATCH[1]}"
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else
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echo "NONE"
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fi
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}
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get_relate_builds_post_data()
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{
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cat <<EOF
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{
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"project": "${1}",
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"buildid": ${2},
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"relatedid": ${3},
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"relationship": "depends on"
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}
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EOF
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}
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gen_full_specs_for_job_and_deps() {
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SPEC_YAML_PATH="${SPEC_DIR}/${SPACK_JOB_SPEC_PKG_NAME}.yaml"
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local spec_names_to_save="${SPACK_JOB_SPEC_PKG_NAME}"
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if [ "${SPACK_ENABLE_CDASH}" == "True" ] ; then
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IFS=';' read -ra DEPS <<< "${SPACK_RELATED_BUILDS}"
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for i in "${DEPS[@]}"; do
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depPkgName="${i}"
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spec_names_to_save="${spec_names_to_save} ${depPkgName}"
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JOB_DEPS_PKG_NAMES+=("${depPkgName}")
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done
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fi
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if [ "${SPACK_COMPILER_ACTION}" == "FIND_ANY" ]; then
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# This corresponds to a bootstrapping phase where we need to
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# rely on any available compiler to build the package (i.e. the
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# compiler needed to be stripped from the spec), and thus we need
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# to concretize the root spec again.
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spack -d buildcache save-yaml --specs "${spec_names_to_save}" --root-spec "${SPACK_ROOT_SPEC}" --yaml-dir "${SPEC_DIR}"
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else
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# in this case, either we're relying on Spack to install missing compiler
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# bootstrapped in a previous phase, or else we only had one phase (like a
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# site which already knows what compilers are available on it's runners),
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# so we don't want to concretize that root spec again. The reason we need
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# this in the first case (bootstrapped compiler), is that we can't concretize
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# a spec at this point if we're going to ask spack to "install_missing_compilers".
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tmp_dir=$(mktemp -d)
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TMP_YAML_PATH="${tmp_dir}/root.yaml"
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ROOT_SPEC_YAML=$(spack python -c "import base64 ; import zlib ; print(str(zlib.decompress(base64.b64decode('${SPACK_ROOT_SPEC}')).decode('utf-8')))")
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echo "${ROOT_SPEC_YAML}" > "${TMP_YAML_PATH}"
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spack -d buildcache save-yaml --specs "${spec_names_to_save}" --root-spec-yaml "${TMP_YAML_PATH}" --yaml-dir "${SPEC_DIR}"
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rm -rf ${tmp_dir}
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fi
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}
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begin_logging
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echo "Running job for spec: ${CI_JOB_NAME}"
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# This should create the directory we referred to as GNUPGHOME earlier
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spack gpg list
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# Importing the secret key using gpg2 directly should allow to
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# sign and verify both
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set +x
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KEY_IMPORT_RESULT=`echo ${SPACK_SIGNING_KEY} | base64 --decode | gpg2 --import`
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check_error $? "gpg2 --import"
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set -x
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spack gpg list --trusted
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spack gpg list --signing
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# To have spack install missing compilers, we need to add a custom
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# configuration scope, then we pass that to the package installation
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# command
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CUSTOM_CONFIG_SCOPE_DIR="${TEMP_DIR}/config_scope"
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mkdir -p "${CUSTOM_CONFIG_SCOPE_DIR}"
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CUSTOM_CONFIG_SCOPE_ARG=""
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if [ "${SPACK_COMPILER_ACTION}" == "INSTALL_MISSING" ]; then
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echo "Make sure bootstrapped compiler will be installed"
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custom_config_file_path="${CUSTOM_CONFIG_SCOPE_DIR}/config.yaml"
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cat <<CONFIG_STUFF > "${custom_config_file_path}"
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config:
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install_missing_compilers: true
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CONFIG_STUFF
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CUSTOM_CONFIG_SCOPE_ARG="-C ${CUSTOM_CONFIG_SCOPE_DIR}"
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# Configure the binary mirror where, if needed, this jobs compiler
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# was installed in binary pacakge form, then tell spack to
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# install_missing_compilers.
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elif [ "${SPACK_COMPILER_ACTION}" == "FIND_ANY" ]; then
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echo "Just find any available compiler"
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spack compiler find
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else
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echo "No compiler action to be taken"
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fi
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# Finally, list the compilers spack knows about
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echo "Compiler Configurations:"
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spack config get compilers
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# Write full-deps yamls for this job spec and its dependencies
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gen_full_specs_for_job_and_deps
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# Make the build_cache directory if it doesn't exist
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mkdir -p "${BUILD_CACHE_DIR}"
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# Get buildcache name so we can write a CDash build id file in the right place.
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# If we're unable to get the buildcache name, we may have encountered a problem
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# concretizing the spec, or some other issue that will eventually cause the job
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# to fail.
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JOB_BUILD_CACHE_ENTRY_NAME=`spack -d buildcache get-buildcache-name --spec-yaml "${SPEC_YAML_PATH}"`
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if [[ $? -ne 0 ]]; then
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echo "ERROR, unable to get buildcache entry name for job ${CI_JOB_NAME}"
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exit 1
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fi
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if [ "${SPACK_ENABLE_CDASH}" == "True" ] ; then
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# Whether we have to build the spec or download it pre-built, we expect to find
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# the cdash build id file sitting in this location afterwards.
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JOB_CDASH_ID_FILE="${BUILD_CACHE_DIR}/${JOB_BUILD_CACHE_ENTRY_NAME}.cdashid"
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fi
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# Finally, we can check the spec we have been tasked with build against
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# the built binary on the remote mirror to see if it needs to be rebuilt
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spack -d buildcache check --spec-yaml "${SPEC_YAML_PATH}" --mirror-url "${SPACK_MIRROR_URL}" --rebuild-on-error
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if [[ $? -ne 0 ]]; then
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# Configure mirror
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spack mirror add local_artifact_mirror "file://${LOCAL_MIRROR}"
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if [ "${SPACK_ENABLE_CDASH}" == "True" ] ; then
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JOB_CDASH_ID="NONE"
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# Install package, using the buildcache from the local mirror to
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# satisfy dependencies.
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BUILD_ID_LINE=`spack -d -k -v "${CUSTOM_CONFIG_SCOPE_ARG}" install --keep-stage --cdash-upload-url "${CDASH_UPLOAD_URL}" --cdash-build "${SPACK_CDASH_BUILD_NAME}" --cdash-site "${SPACK_CDASH_SITE}" --cdash-track "${SPACK_JOB_SPEC_BUILDGROUP}" -f "${SPEC_YAML_PATH}" | grep "buildSummary\\.php"`
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check_error $? "spack install"
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# By parsing the output of the "spack install" command, we can get the
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# buildid generated for us by CDash
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JOB_CDASH_ID=$(extract_build_id "${BUILD_ID_LINE}")
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# Write the .cdashid file to the buildcache as well
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echo "${JOB_CDASH_ID}" >> ${JOB_CDASH_ID_FILE}
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else
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spack -d -k -v "${CUSTOM_CONFIG_SCOPE_ARG}" install --keep-stage -f "${SPEC_YAML_PATH}"
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fi
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# Copy some log files into an artifact location, once we have a way
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# to provide a spec.yaml file to more spack commands (e.g. "location")
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# stage_dir=$(spack location --stage-dir -f "${SPEC_YAML_PATH}")
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# build_log_file=$(find -L "${stage_dir}" | grep "spack-build\\.out")
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# config_log_file=$(find -L "${stage_dir}" | grep "config\\.log")
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# cp "${build_log_file}" "${JOB_LOG_DIR}/"
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# cp "${config_log_file}" "${JOB_LOG_DIR}/"
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# Create buildcache entry for this package, reading the spec from the yaml
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# file.
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spack -d buildcache create --spec-yaml "${SPEC_YAML_PATH}" -a -f -d "${LOCAL_MIRROR}" --no-rebuild-index
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check_error $? "spack buildcache create"
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||||
# TODO: The upload-s3 command should eventually be replaced with something
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||||
# like: "spack buildcache put <mirror> <spec>", when that subcommand is
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# properly implemented.
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||||
if [ ! -z "${SPACK_S3_UPLOAD_MIRROR_URL}" ] ; then
|
||||
spack -d upload-s3 spec --base-dir "${LOCAL_MIRROR}" --spec-yaml "${SPEC_YAML_PATH}" --endpoint-url "${SPACK_S3_UPLOAD_MIRROR_URL}"
|
||||
check_error $? "spack upload-s3 spec"
|
||||
else
|
||||
spack -d buildcache copy --base-dir "${LOCAL_MIRROR}" --spec-yaml "${SPEC_YAML_PATH}" --destination-url "${SPACK_MIRROR_URL}"
|
||||
fi
|
||||
else
|
||||
echo "spec ${CI_JOB_NAME} is already up to date on remote mirror, downloading it"
|
||||
|
||||
# Configure remote mirror so we can download buildcache entry
|
||||
spack mirror add remote_binary_mirror ${SPACK_MIRROR_URL}
|
||||
|
||||
# Now download it
|
||||
BUILDCACHE_DL_ARGS=("--spec-yaml" "${SPEC_YAML_PATH}" "--path" "${BUILD_CACHE_DIR}/" )
|
||||
if [ "${SPACK_ENABLE_CDASH}" == "True" ] ; then
|
||||
BUILDCACHE_DL_ARGS+=( "--require-cdashid" )
|
||||
fi
|
||||
spack -d buildcache download "${BUILDCACHE_DL_ARGS[@]}"
|
||||
check_error $? "spack buildcache download"
|
||||
fi
|
||||
|
||||
# The next step is to relate this job to the jobs it depends on
|
||||
if [ "${SPACK_ENABLE_CDASH}" == "True" ] ; then
|
||||
if [ -f "${JOB_CDASH_ID_FILE}" ]; then
|
||||
JOB_CDASH_BUILD_ID=$(<${JOB_CDASH_ID_FILE})
|
||||
|
||||
if [ "${JOB_CDASH_BUILD_ID}" == "NONE" ]; then
|
||||
echo "ERROR: unable to read this jobs id from ${JOB_CDASH_ID_FILE}"
|
||||
exit 1
|
||||
fi
|
||||
|
||||
# Now get CDash ids for dependencies and "relate" each dependency build
|
||||
# with this jobs build
|
||||
for DEP_PKG_NAME in "${JOB_DEPS_PKG_NAMES[@]}"; do
|
||||
echo "Getting cdash id for dependency --> ${DEP_PKG_NAME} <--"
|
||||
DEP_SPEC_YAML_PATH="${SPEC_DIR}/${DEP_PKG_NAME}.yaml"
|
||||
DEP_JOB_BUILDCACHE_NAME=`spack -d buildcache get-buildcache-name --spec-yaml "${DEP_SPEC_YAML_PATH}"`
|
||||
|
||||
if [[ $? -eq 0 ]]; then
|
||||
DEP_JOB_ID_FILE="${BUILD_CACHE_DIR}/${DEP_JOB_BUILDCACHE_NAME}.cdashid"
|
||||
echo "DEP_JOB_ID_FILE path = ${DEP_JOB_ID_FILE}"
|
||||
|
||||
if [ -f "${DEP_JOB_ID_FILE}" ]; then
|
||||
DEP_JOB_CDASH_BUILD_ID=$(<${DEP_JOB_ID_FILE})
|
||||
echo "File ${DEP_JOB_ID_FILE} contained value ${DEP_JOB_CDASH_BUILD_ID}"
|
||||
echo "Relating builds -> ${SPACK_CDASH_BUILD_NAME} (buildid=${JOB_CDASH_BUILD_ID}) depends on ${DEP_PKG_NAME} (buildid=${DEP_JOB_CDASH_BUILD_ID})"
|
||||
relateBuildsPostBody="$(get_relate_builds_post_data "${SPACK_CDASH_PROJECT}" ${JOB_CDASH_BUILD_ID} ${DEP_JOB_CDASH_BUILD_ID})"
|
||||
relateBuildsResult=`curl "${DEP_JOB_RELATEBUILDS_URL}" -H "Content-Type: application/json" -H "Accept: application/json" -d "${relateBuildsPostBody}"`
|
||||
echo "Result of curl request: ${relateBuildsResult}"
|
||||
else
|
||||
echo "ERROR: Did not find expected .cdashid file for dependency: ${DEP_JOB_ID_FILE}"
|
||||
exit 1
|
||||
fi
|
||||
else
|
||||
echo "ERROR: Unable to get buildcache entry name for ${DEP_SPEC_NAME}"
|
||||
exit 1
|
||||
fi
|
||||
done
|
||||
else
|
||||
echo "ERROR: Did not find expected .cdashid file ${JOB_CDASH_ID_FILE}"
|
||||
exit 1
|
||||
fi
|
||||
fi
|
||||
|
||||
# Show the size of the buildcache and a list of what's in it, directly
|
||||
# in the gitlab log output
|
||||
(
|
||||
restore_io
|
||||
du -sh ${BUILD_CACHE_DIR}
|
||||
find ${BUILD_CACHE_DIR} -maxdepth 3 -type d -ls
|
||||
)
|
||||
|
||||
echo "End of rebuild package script"
|
||||
Reference in New Issue
Block a user