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salmon: New patch (#22686)

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Desmond Orton 2021-04-06 13:37:32 -06:00 committed by GitHub
parent 442241d477
commit 838bba70c6
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1 changed files with 6 additions and 1 deletions
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7
var/spack/repos/builtin/packages/salmon/package.py
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@ -23,7 +23,7 @@ class Salmon(CMakePackage):
depends_on('tbb')
depends_on('boost@:1.66.0', when='@:0.14.1')
depends_on('boost@1.72.0', when='@1.4.0')
depends_on('boost@1.72.0:', when='@1.4.0:')
depends_on('cereal')
depends_on('jemalloc')
depends_on('xz')
@ -76,6 +76,11 @@ def patch(self):
'scripts/fetchPufferfish.sh')
symlink('./salmon-v{0}.zip'.format(self.version),
'./external/pufferfish.zip')
# Fix issues related to lto-wrapper during install
filter_file('INTERPROCEDURAL_OPTIMIZATION True',
'INTERPROCEDURAL_OPTIMIZATION False',
'src/CMakeLists.txt', string=True)
filter_file('curl -k.*', '', 'scripts/fetchPufferfish.sh')
def cmake_args(self):
args = [