falco: new package @1.2.1 (#40289)
* falco: new package @1.2.1 * specifying gmake * Replacing homepage - readthedocs is empty --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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|  | # Copyright 2013-2023 Lawrence Livermore National Security, LLC and other | ||||||
|  | # Spack Project Developers. See the top-level COPYRIGHT file for details. | ||||||
|  | # | ||||||
|  | # SPDX-License-Identifier: (Apache-2.0 OR MIT) | ||||||
|  | 
 | ||||||
|  | from spack.package import * | ||||||
|  | 
 | ||||||
|  | 
 | ||||||
|  | class Falco(AutotoolsPackage): | ||||||
|  |     """A C++ drop-in replacement of FastQC to assess the quality of sequence read data""" | ||||||
|  | 
 | ||||||
|  |     homepage = "https://github.com/smithlabcode/falco" | ||||||
|  |     url = "https://github.com/smithlabcode/falco/releases/download/v1.2.1/falco-1.2.1.tar.gz" | ||||||
|  | 
 | ||||||
|  |     version("1.2.1", sha256="33de8aafac45c7aea055ed7ab837d0a39d12dcf782816cea8a6c648acb911057") | ||||||
|  | 
 | ||||||
|  |     variant("htslib", default=False, description="Add support for BAM files") | ||||||
|  | 
 | ||||||
|  |     depends_on("gmake", type="build") | ||||||
|  |     depends_on("zlib-ng") | ||||||
|  |     depends_on("htslib", when="+htslib") | ||||||
|  | 
 | ||||||
|  |     def configure_args(self): | ||||||
|  |         if self.spec.satisfies("+htslib"): | ||||||
|  |             return ["--enable-htslib"] | ||||||
|  |         return [] | ||||||
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