gemma: add new package. (#31078)

Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
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dlkuehn 2022-06-14 07:53:14 -05:00 committed by GitHub
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Gemma(MakefilePackage):
"""GEMMA is a software toolkit for fast application of linear mixed models
(LMMs) and related models to genome-wide association studies (GWAS) and
other large-scale data sets."""
homepage = "https://github.com/genetics-statistics/GEMMA"
url = "https://github.com/genetics-statistics/GEMMA/archive/refs/tags/v0.98.5.tar.gz"
maintainers = ['snehring', 'dlkuehn']
version('0.98.5', sha256='3ed336deee29e370f96ec8f1a240f7b62550e57dcd1694245ce7ec8f42241677')
depends_on('zlib')
# openblas is the default
# other lapack implementors can be made to work
# but must provide cblas, blas, and lapack libs
depends_on('openblas')
depends_on('gsl@2:')
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('bin/gemma', prefix.bin)