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Merge branch 'features/newarch' into develop

Browse Source 
Conflicts:
	lib/spack/spack/config.py
	var/spack/repos/builtin/packages/lua/package.py
This commit is contained in:
Todd Gamblin
2016-06-16 03:03:26 -07:00
parent c803f7ae98 17b868381f
commit 88b73bacdb
68 changed files with 2350 additions and 516 deletions
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40
var/spack/mock_configs/site_spackconfig/compilers.yaml Normal file
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@@ -0,0 +1,40 @@
compilers:
all:
clang@3.3:
cc: /path/to/clang
cxx: /path/to/clang++
f77: None
fc: None
modules: None
strategy: PATH
gcc@4.5.0:
cc: /path/to/gcc
cxx: /path/to/g++
f77: /path/to/gfortran
fc: /path/to/gfortran
modules: None
strategy: PATH
gcc@5.2.0:
cc: cc
cxx: CC
f77: ftn
fc: ftn
modules:
- PrgEnv-gnu
- gcc/5.2.0
strategy: MODULES
intel@15.0.1:
cc: cc
ccx: CC
f77: ftn
fc: ftn
modules:
- PrgEnv-intel
- intel/15.0.1
strategy: MODULES
intel@15.1.2:
cc: /path/to/icc
cxx: /path/to/ic++
f77: /path/to/ifort
fc: /path/to/ifort
strategy: PATH

38
var/spack/packages/adios/package.py Normal file
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@@ -0,0 +1,38 @@
import os
from spack import *
class Adios(Package):
"""The Adaptable IO System (ADIOS) provides a simple,
flexible way for scientists to describe the
data in their code that may need to be written,
read, or processed outside of the running simulation
"""
homepage = "http://www.olcf.ornl.gov/center-projects/adios/"
url = "http://users.nccs.gov/~pnorbert/adios-1.9.0.tar.gz"
version('1.9.0', 'dbf5cb10e32add2f04c9b4052b7ffa76')
# Lots of setting up here for this package
# module swap PrgEnv-intel PrgEnv-$COMP
# module load cray-netcdf/4.3.3.1
# module load cray-hdf5/1.8.14
# module load python/2.7.10
depends_on('hdf5')
depends_on('mxml')
def install(self, spec, prefix):
configure_args = ["--prefix=%s" % prefix,
"--with-mxml=%s" % spec['mxml'].prefix,
"--with-hdf5=%s" % spec['hdf5'].prefix,
"--with-netcdf=%s" % os.environ["NETCDF_DIR"],
"--with-infiniband=no",
"MPICC=cc","MPICXX=CC","MPIFC=ftn",
"CPPFLAGS=-DMPICH_IGNORE_CXX_SEEK"]
if spec.satisfies('%gcc'):
configure_args.extend(["CC=gcc", "CXX=g++", "FC=gfortran"])
configure(*configure_args)
make()
make("install")

26
var/spack/packages/mxml/package.py Normal file
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@@ -0,0 +1,26 @@
import os
from spack import *
class Mxml(Package):
"""Mini-XML is a small XML library that you can use to read and write XML
and XML-like data files in your application without requiring large
non-standard libraries
"""
homepage = "http://www.msweet.org"
url = "http://www.msweet.org/files/project3/mxml-2.9.tar.gz"
version('2.9', 'e21cad0f7aacd18f942aa0568a8dee19')
version('2.8', 'd85ee6d30de053581242c4a86e79a5d2')
version('2.7', '76f2ae49bf0f5745d5cb5d9507774dc9')
version('2.6', '68977789ae64985dddbd1a1a1652642e')
version('2.5', 'f706377fba630b39fa02fd63642b17e5')
# module swap PrgEnv-intel PrgEnv-$COMP (Can use whatever compiler you want to use)
# Case statement to change CC and CXX flags
def install(self, spec, prefix):
configure('--prefix=%s' % prefix, "--disable-shared", 'CFLAGS=-static')
make()
make("install")

37
var/spack/repos/builtin.mock/packages/externalmodule/package.py Normal file
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@@ -0,0 +1,37 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Externalmodule(Package):
homepage = "http://somewhere.com"
url = "http://somewhere.com/module-1.0.tar.gz"
version('1.0', '1234567890abcdef1234567890abcdef')
depends_on('externalprereq')
def install(self, spec, prefix):
pass

42
var/spack/repos/builtin.mock/packages/multimethod/package.py
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@@ -22,8 +22,11 @@
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
import imp
from llnl.util.filesystem import join_path
from spack.util.naming import mod_to_class
from spack import *
import spack.architecture
class Multimethod(Package):
"""This package is designed for use with Spack's multimethod test.
@@ -101,25 +104,26 @@ def has_a_default(self):
#
# Make sure we can switch methods on different architectures
# Make sure we can switch methods on different target
#
@when('arch=x86_64')
def different_by_architecture(self):
return 'x86_64'
@when('arch=ppc64')
def different_by_architecture(self):
return 'ppc64'
@when('arch=ppc32')
def different_by_architecture(self):
return 'ppc32'
@when('arch=arm64')
def different_by_architecture(self):
return 'arm64'
# for platform_name in ['cray_xc', 'darwin', 'linux']:
# file_path = join_path(spack.platform_path, platform_name)
# platform_mod = imp.load_source('spack.platforms', file_path + '.py')
# cls = getattr(platform_mod, mod_to_class(platform_name))
# platform = cls()
platform = spack.architecture.sys_type()
targets = platform.targets.values()
if len(targets) > 1:
targets = targets[:-1]
for target in targets:
@when('target='+target.name)
def different_by_target(self):
if isinstance(self.spec.architecture.target,basestring):
return self.spec.architecture.target
else:
return self.spec.architecture.target.name
#
# Make sure we can switch methods on different dependencies
#

3
var/spack/repos/builtin/packages/binutils/package.py
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@@ -30,8 +30,9 @@ class Binutils(Package):
url="https://ftp.gnu.org/gnu/binutils/binutils-2.25.tar.bz2"
# 2.26 is incompatible with py-pillow build for some reason.
version('2.26', '64146a0faa3b411ba774f47d41de239f')
version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66')
version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66', preferred=True)
version('2.24', 'e0f71a7b2ddab0f8612336ac81d9636b')
version('2.23.2', '4f8fa651e35ef262edc01d60fb45702e')
version('2.20.1', '2b9dc8f2b7dbd5ec5992c6e29de0b764')

2
var/spack/repos/builtin/packages/boost/package.py
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@@ -132,7 +132,7 @@ def url_for_version(self, version):
"/boost/%s/boost_%s.tar.bz2" % (dots, underscores)
def determine_toolset(self, spec):
if spec.satisfies("arch=darwin-x86_64"):
if spec.satisfies("platform=darwin"):
return 'darwin'
toolsets = {'g++': 'gcc',

2
var/spack/repos/builtin/packages/espresso/package.py
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@@ -87,7 +87,7 @@ def install(self, spec, prefix):
configure(*options)
make('all')
if spec.architecture.startswith('darwin'):
if spec.satisfies('platform=darwin'):
mkdirp(prefix.bin)
for filename in glob("bin/*.x"):
install(filename, prefix.bin)

2
var/spack/repos/builtin/packages/libpciaccess/package.py
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@@ -37,7 +37,7 @@ class Libpciaccess(Package):
def install(self, spec, prefix):
# libpciaccess does not support OS X
if spec.satisfies('arch=darwin-x86_64'):
if spec.satisfies('platform=darwin'):
# create a dummy directory
mkdir(prefix.lib)
return

39
var/spack/repos/builtin/packages/libpthread-stubs/package.py Normal file
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@@ -0,0 +1,39 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class LibpthreadStubs(Package):
"""The libpthread-stubs package provides weak aliases for pthread
functions not provided in libc or otherwise available by
default. """
homepage = "http://xcb.freedesktop.org/"
url = "http://xcb.freedesktop.org/dist/libpthread-stubs-0.1.tar.bz2"
version('0.3', 'e8fa31b42e13f87e8f5a7a2b731db7ee')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

44
var/spack/repos/builtin/packages/libxau/package.py Normal file
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@@ -0,0 +1,44 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Libxau(Package):
"""The libXau package contains a library implementing the X11
Authorization Protocol. This is useful for restricting client
access to the display."""
homepage = "http://xcb.freedesktop.org/"
url = "http://ftp.x.org/pub/individual/lib/libXau-1.0.8.tar.bz2"
version('1.0.8', '685f8abbffa6d145c0f930f00703b21b')
depends_on('xproto')
def install(self, spec, prefix):
# FIXME: Modify the configure line to suit your build system here.
configure('--prefix=%s' % prefix)
# FIXME: Add logic to build and install here
make()
make("install")

7
var/spack/repos/builtin/packages/libxcb/package.py
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@@ -35,18 +35,19 @@ class Libxcb(Package):
version('1.11', '1698dd837d7e6e94d029dbe8b3a82deb')
version('1.11.1', '118623c15a96b08622603a71d8789bf3')
depends_on("python")
depends_on("xcb-proto")
depends_on("pkg-config")
# depends_on('pthread') # Ubuntu: apt-get install libpthread-stubs0-dev
# depends_on('xau') # Ubuntu: apt-get install libxau-dev
depends_on("libpthread-stubs")
depends_on('libxau')
def patch(self):
filter_file('typedef struct xcb_auth_info_t {', 'typedef struct {', 'src/xcb.h')
def install(self, spec, prefix):
env['PKG_CONFIG_PATH'] = env['PKG_CONFIG_PATH'] + ':/usr/lib64/pkgconfig'
configure("--prefix=%s" % prefix)
make()

12
var/spack/repos/builtin/packages/llvm/package.py
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@@ -267,16 +267,16 @@ def install(self, spec, prefix):
if '+all_targets' not in spec: # all is default on cmake
targets = ['CppBackend', 'NVPTX', 'AMDGPU']
if 'x86' in spec.architecture.lower():
if 'x86' in spec.architecture.target.lower():
targets.append('X86')
elif 'arm' in spec.architecture.lower():
elif 'arm' in spec.architecture.target.lower():
targets.append('ARM')
elif 'aarch64' in spec.architecture.lower():
elif 'aarch64' in spec.architecture.target.lower():
targets.append('AArch64')
elif 'sparc' in spec.architecture.lower():
elif 'sparc' in spec.architecture.target.lower():
targets.append('sparc')
elif ('ppc' in spec.architecture.lower() or
'power' in spec.architecture.lower()):
elif ('ppc' in spec.architecture.target.lower() or
'power' in spec.architecture.target.lower()):
targets.append('PowerPC')
cmake_args.append('-DLLVM_TARGETS_TO_BUILD:Bool=' + ';'.join(targets))

2
var/spack/repos/builtin/packages/lua/package.py
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@@ -57,7 +57,7 @@ class Lua(Package):
placement='luarocks')
def install(self, spec, prefix):
if spec.satisfies("arch=darwin-i686") or spec.satisfies("arch=darwin-x86_64"): # NOQA: ignore=E501
if spec.satisfies("platform=darwin"):
target = 'macosx'
else:
target = 'linux'

2
var/spack/repos/builtin/packages/openssl/package.py
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@@ -100,7 +100,7 @@ def install(self, spec, prefix):
# in the environment, then this will override what is set in the
# Makefile, leading to build errors.
env.pop('APPS', None)
if spec.satisfies("arch=darwin-x86_64") or spec.satisfies("arch=ppc64"):
if spec.satisfies("target=x86_64") or spec.satisfies("target=ppc64"):
# This needs to be done for all 64-bit architectures (except Linux,
# where it happens automatically?)
env['KERNEL_BITS'] = '64'

2
var/spack/repos/builtin/packages/py-h5py/package.py
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@@ -37,6 +37,8 @@ class PyH5py(Package):
depends_on('hdf5')
depends_on('py-numpy')
depends_on('py-cython')
depends_on('py-six')
depends_on('py-pkgconfig')
def install(self, spec, prefix):
python('setup.py', 'configure', '--hdf5=%s' % spec['hdf5'].prefix)

38
var/spack/repos/builtin/packages/xorg-util-macros/package.py Normal file
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@@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class XorgUtilMacros(Package):
"""The util-macros package contains the m4 macros used by all of the Xorg packages."""
homepage = "http://www.example.com"
url = "http://ftp.x.org/pub/individual/util/util-macros-1.19.0.tar.bz2"
version('1.19.0', '1cf984125e75f8204938d998a8b6c1e1')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

41
var/spack/repos/builtin/packages/xproto/package.py Normal file
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@@ -0,0 +1,41 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Xproto(Package):
"""The Xorg protocol headers provide the header files required to
build the system, and to allow other applications to build against
the installed X Window system."""
homepage = "http://www.x.org/"
url = "https://www.x.org/archive//individual/proto/xproto-7.0.29.tar.gz"
version('7.0.29', '16a78dd2c5ad73011105c96235f6a0af')
depends_on("xorg-util-macros")
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")