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bismark: add 0.24.1, add HISAT2 dependency (#38210)

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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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George Young 2023-06-08 16:49:00 +01:00 committed by GitHub
parent 80cefedac5
commit 8907e52933
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1 changed files with 2 additions and 0 deletions
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var/spack/repos/builtin/packages/bismark/package.py
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@ -13,6 +13,7 @@ class Bismark(Package):
homepage = "https://www.bioinformatics.babraham.ac.uk/projects/bismark" homepage = "https://www.bioinformatics.babraham.ac.uk/projects/bismark"
url = "https://github.com/FelixKrueger/Bismark/archive/0.23.0.tar.gz" url = "https://github.com/FelixKrueger/Bismark/archive/0.23.0.tar.gz"
version("0.24.1", sha256="c5409f5fa470ea5ac07327ced28c60b793f5ef88c5a7bc75b71dde0f52f39894")
version("0.23.0", sha256="ea1625808487c1442dbf825d9cbe5c0cbc37ea5bd1460f59e1e0ccc80cc01c9e") version("0.23.0", sha256="ea1625808487c1442dbf825d9cbe5c0cbc37ea5bd1460f59e1e0ccc80cc01c9e")
version("0.19.0", sha256="91707737f96a0574956a282b635abad7560e7d90bee188a67a7807b2470deae2") version("0.19.0", sha256="91707737f96a0574956a282b635abad7560e7d90bee188a67a7807b2470deae2")
version("0.18.2", sha256="83391c5b5af33047178e7774ac25f5a69ce9315c13ae02f016baf7c50b73e702") version("0.18.2", sha256="83391c5b5af33047178e7774ac25f5a69ce9315c13ae02f016baf7c50b73e702")
@ -20,6 +21,7 @@ class Bismark(Package):
depends_on("bowtie2", type="run") depends_on("bowtie2", type="run")
depends_on("perl", type="run") depends_on("perl", type="run")
depends_on("samtools", type="run") depends_on("samtools", type="run")
depends_on("hisat2", type="run", when="@0.21.0:")
def install(self, spec, prefix): def install(self, spec, prefix):
mkdirp(prefix.bin) mkdirp(prefix.bin)