Update pipeline configurations
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
This commit is contained in:
Massimiliano Culpo
parent
66d7085567
commit
8b14500fdc
@ -4,5 +4,5 @@ config:
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root: /home/software/spack
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padded_length: 256
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projections:
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all: '{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'
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all: "{architecture.platform}/{architecture.target}/{name}-{version}-{hash}"
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@ -74,7 +74,7 @@ install_compilers() {
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if [ -f "/bootstrap-compilers/spack/etc/spack/compilers.yaml" ]; then
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# Running inside a gitlab CI container
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# Intel and gcc@12 compiler are pre-installed and their location is known in
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cp /bootstrap-compilers/spack/etc/spack/compilers.yaml "${SPACK_ROOT}"/etc/spack/
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spack compiler list
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else
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spack compiler add --scope site
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# We need to treat compilers as essentially external, i.e. their installation location
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@ -57,34 +57,22 @@ spack:
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- compiler_specs:
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- gcc@11.2
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# Licensing OK?
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# - intel-oneapi-compilers@2022.1
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# - nvhpc
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- app_specs:
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- bwa
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# Depends on simde which requires newer compiler?
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#- bowtie2
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# Requires x86_64 specific ASM
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#- cistem
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- cromwell
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- fastqc
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- flux-sched
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- flux-core
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- flux-pmix
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- gatk
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- gromacs
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- lammps
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- wrf build_type=dm+sm
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- mfem
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- mpas-model ^parallelio+pnetcdf
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- nextflow
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- octave
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- openfoam
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- osu-micro-benchmarks
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- parallel
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# - paraview
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- picard
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- quantum-espresso
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- raja
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# Depends on bowtie2 -> simde which requires newer compiler?
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@ -94,12 +82,9 @@ spack:
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- salmon
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- samtools
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- seqtk
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- snakemake
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- star
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# Requires gcc@9:
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#- ufs-weather-model
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# requires LLVM which fails without constraint
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#- visit
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- lib_specs:
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- openmpi fabrics=ofi
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@ -115,7 +100,6 @@ spack:
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- target=aarch64
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- target=neoverse_n1
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specs:
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- matrix:
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@ -131,7 +115,10 @@ spack:
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- matrix:
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- - $compiler_specs
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- - $compiler
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- - $target
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- matrix:
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- [cromwell, fastqc, gatk, nextflow, parallel, picard, snakemake]
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- [$target]
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ci:
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pipeline-gen:
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@ -2,6 +2,8 @@ spack:
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view: false
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packages:
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all:
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require:
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- target=x86_64_v3
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providers:
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blas:
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- openblas
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@ -12,7 +14,8 @@ spack:
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- mpich
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variants: +mpi
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tbb:
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require: intel-tbb
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require:
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- intel-tbb
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binutils:
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variants: +ld +gold +headers +libiberty ~nls
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version:
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@ -43,8 +46,6 @@ spack:
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- '1.18'
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relion:
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variants: ~mklfft
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# texlive:
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# version: [20210325]
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trilinos:
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variants: +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext
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+ifpack +ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu
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@ -57,56 +58,35 @@ spack:
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- compiler_specs:
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- gcc@11.2
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# Licensing OK?
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# - intel-oneapi-compilers@2022.1
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# - nvhpc
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- cuda_specs:
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# Disabled for consistency with aarch64
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#- relion +cuda cuda_arch=70
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- raja +cuda cuda_arch=70
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- mfem +cuda cuda_arch=70
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- app_specs:
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- bwa
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# Disabled for consistency with aarch64
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#- bowtie2
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# Disabled for consistency with aarch64
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#- cistem
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- cromwell
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- fastqc
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- flux-sched
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- flux-core
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- flux-pmix
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- gatk
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- gromacs
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- lammps
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- wrf build_type=dm+sm
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- mfem
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- mpas-model ^parallelio+pnetcdf
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- nextflow
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- octave
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- openfoam
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- osu-micro-benchmarks
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- parallel
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# - paraview
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- picard
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- quantum-espresso
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# Build broken for gcc@7.3.1 x86_64_v4 (error: '_mm512_loadu_epi32' was not declared in this scope)
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#- raja
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# Disabled for consistency with aarch64
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#- rsem
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# Errors on texlive
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#- rstudio
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- salmon
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- samtools
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- seqtk
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- snakemake
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- star
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# Requires gcc@9:
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#- ufs-weather-model
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# Disabled for consistency with aarch64
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#- visit
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- lib_specs:
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- openmpi fabrics=ofi
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@ -118,31 +98,32 @@ spack:
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- compiler:
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- '%gcc@7.3.1'
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- target:
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- target=x86_64_v3
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specs:
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- matrix:
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- - $cuda_specs
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- - $compiler
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- - $target
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- matrix:
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- - $app_specs
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- - $compiler
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- - $target
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- matrix:
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- - $lib_specs
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- - $compiler
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- - $target
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- matrix:
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- - $compiler_specs
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- - $compiler
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- - $target
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- cromwell
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- fastqc
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- gatk
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- parallel
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- nextflow
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- picard
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- snakemake
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ci:
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pipeline-gen:
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@ -55,9 +55,11 @@ packages:
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- "wrf%arm"
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- "wrf%gcc"
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all:
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compiler: [gcc, arm, nvhpc, clang]
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providers:
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blas: [armpl-gcc, openblas]
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c: [gcc, arm, nvhpc, llvm]
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cxx: [gcc, arm, nvhpc, llvm]
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fortran: [gcc, arm, nvhpc, llvm]
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fftw-api: [armpl-gcc, fftw]
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lapack: [armpl-gcc, openblas]
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mpi: [openmpi, mpich]
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@ -23,8 +23,6 @@ packages:
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- "+intel_provided_gcc target=x86_64_v4 ^intel-oneapi-mkl"
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- "+intel_provided_gcc target=x86_64_v3 ^intel-oneapi-mkl"
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when: "%oneapi"
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intel-oneapi-compilers:
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require: "intel-oneapi-compilers %gcc target=x86_64_v3"
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intel-oneapi-mpi:
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variants: +external-libfabric generic-names=True
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lammps:
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@ -124,14 +122,16 @@ packages:
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when: "%oneapi"
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all:
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compiler: [oneapi, gcc]
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permissions:
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read: world
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write: user
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providers:
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blas: [intel-oneapi-mkl]
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c: [intel-oneapi-compilers, gcc]
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cxx: [intel-oneapi-compilers, gcc]
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daal: [intel-oneapi-dal]
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fftw-api: [intel-oneapi-mkl]
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fortran: [intel-oneapi-compilers, gcc]
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ipp: [intel-oneapi-ipp]
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lapack: [intel-oneapi-mkl]
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mkl: [intel-oneapi-mkl]
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@ -139,5 +139,22 @@ packages:
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tbb: [intel-oneapi-tbb, intel-tbb]
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scalapack: [intel-oneapi-mkl]
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# compilers
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gcc:
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externals:
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- spec: gcc@12.4.0 languages='c,c++,fortran'
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prefix: /home/software/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeh/linux-amzn2-x86_64_v3/gcc-7.3.1/gcc-12.4.0-pttzchh7o54nhmycj4wgzw5mic6rk2nb
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extra_attributes:
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compilers:
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c: /home/software/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeh/linux-amzn2-x86_64_v3/gcc-7.3.1/gcc-12.4.0-pttzchh7o54nhmycj4wgzw5mic6rk2nb/bin/gcc
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cxx: /home/software/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeh/linux-amzn2-x86_64_v3/gcc-7.3.1/gcc-12.4.0-pttzchh7o54nhmycj4wgzw5mic6rk2nb/bin/g++
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fortran: /home/software/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeh/linux-amzn2-x86_64_v3/gcc-7.3.1/gcc-12.4.0-pttzchh7o54nhmycj4wgzw5mic6rk2nb/bin/gfortran
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intel-oneapi-compilers:
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externals:
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- spec: intel-oneapi-compilers@2024.1.0 target=x86_64_v3
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prefix: /home/software/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeh/linux-amzn2-x86_64_v3/gcc-12.4.0/intel-oneapi-compilers-2024.1.0-f5u3psfhbwscasajkn324igtupn3blop/compiler/2024.1
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extra_attributes:
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compilers:
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c: /home/software/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeh/linux-amzn2-x86_64_v3/gcc-12.4.0/intel-oneapi-compilers-2024.1.0-f5u3psfhbwscasajkn324igtupn3blop/compiler/2024.1/bin/icx
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cxx: /home/software/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeh/linux-amzn2-x86_64_v3/gcc-12.4.0/intel-oneapi-compilers-2024.1.0-f5u3psfhbwscasajkn324igtupn3blop/compiler/2024.1/bin/icpx
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fortran: /home/software/spack/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeh/linux-amzn2-x86_64_v3/gcc-12.4.0/intel-oneapi-compilers-2024.1.0-f5u3psfhbwscasajkn324igtupn3blop/compiler/2024.1/bin/ifx
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@ -2,24 +2,21 @@ spack:
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view: false
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packages:
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all:
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require: target=x86_64_v3
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definitions:
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- default_specs:
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- 'uncrustify build_system=autotools'
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- 'uncrustify build_system=cmake'
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- lz4 # MakefilePackage
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- mpich~fortran # AutotoolsPackage
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- py-setuptools # PythonPackage
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- openjpeg # CMakePackage
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- r-rcpp # RPackage
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- ruby-rake # RubyPackage
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- arch:
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- '%gcc'
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require:
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- target=x86_64_v3
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c:
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require:
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- gcc
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specs:
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- matrix:
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- - $default_specs
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- - $arch
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- 'uncrustify build_system=autotools'
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- 'uncrustify build_system=cmake'
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- lz4 # MakefilePackage
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- mpich~fortran # AutotoolsPackage
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- py-setuptools # PythonPackage
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- openjpeg # CMakePackage
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- r-rcpp # RPackage
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- ruby-rake # RubyPackage
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cdash:
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build-group: Build Systems
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@ -1,95 +1,87 @@
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spack:
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view: false
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packages:
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all:
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require: target=x86_64_v3
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require:
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- target=x86_64_v3
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prefer:
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- '%gcc'
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gcc:
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externals:
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- spec: gcc@=10.2.1 languages=c,c++,fortran
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prefix: /opt/rh/devtoolset-10/root/usr
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extra_attributes:
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compilers:
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c: /opt/rh/devtoolset-10/root/usr/bin/gcc
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cxx: /opt/rh/devtoolset-10/root/usr/bin/g++
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fortran: /opt/rh/devtoolset-10/root/usr/bin/gfortran
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concretizer:
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unify: true
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reuse: false
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definitions:
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- default_specs:
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# editors
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- neovim~no_luajit
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- py-pynvim
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- emacs+json+native+treesitter # note, pulls in gcc
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# - tree-sitter is a dep, should also have cli but no package
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- nano # just in case
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# tags and scope search helpers
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- universal-ctags # only maintained ctags, works better with c++
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- direnv
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# runtimes and compilers
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- python
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- llvm+link_llvm_dylib~lld~lldb~polly+python build_type=MinSizeRel # for clangd, clang-format
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- node-js # for editor plugins etc., pyright language server
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- npm
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- cmake
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- libtool
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- go # to build fzf, gh, hub
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- rust+dev # fd, ripgrep, hyperfine, exa, rust-analyzer
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- binutils+ld+gold+plugins # support linking with built gcc
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# styling and lints
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- astyle
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- cppcheck
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- uncrustify
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- py-fprettify
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- py-fortran-language-server
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- py-python-lsp-server
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# cli dev tools
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- ripgrep
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- gh
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- fd
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# - bfs # liburing: /usr/include/linux/ipv6.h:19:8: error: redefinition of 'struct in6_pktinfo'
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- fzf
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- tree
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- jq
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- py-yq
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- hub
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- ncdu
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- eza
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- lsd
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- hyperfine
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- htop
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- tmux
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- ccache
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# ensure we can use a jobserver build and do this fast
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- gmake
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- ninja # should be @kitware, can't be because of meson requirement
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- openssl certs=system # must be this, system external does not work
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- libtree
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- patchelf
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- sed
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- which
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- elfutils
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- fontconfig
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- font-util
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- gdb
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- flex
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- graphviz
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- doxygen
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- meson
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- arch:
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- '%gcc target=x86_64_v3'
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specs:
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- matrix:
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- - $default_specs
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- - $arch
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compilers:
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- compiler:
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spec: gcc@=10.2.1
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paths:
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cc: /opt/rh/devtoolset-10/root/usr/bin/gcc
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cxx: /opt/rh/devtoolset-10/root/usr/bin/g++
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f77: /opt/rh/devtoolset-10/root/usr/bin/gfortran
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fc: /opt/rh/devtoolset-10/root/usr/bin/gfortran
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flags: {}
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operating_system: centos7
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target: x86_64
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modules: []
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environment: {}
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extra_rpaths: []
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# editors
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- neovim~no_luajit
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- py-pynvim
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# FIXME (compiler as nodes): recover dependency on gcc as a library when +native
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- emacs+json~native+treesitter # note, pulls in gcc
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# - tree-sitter is a dep, should also have cli but no package
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- nano # just in case
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# tags and scope search helpers
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- universal-ctags # only maintained ctags, works better with c++
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- direnv
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# runtimes and compilers
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- python
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- llvm+link_llvm_dylib~lld~lldb~polly+python build_type=MinSizeRel # for clangd, clang-format
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- node-js # for editor plugins etc., pyright language server
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- npm
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||||
- cmake
|
||||
- libtool
|
||||
- go # to build fzf, gh, hub
|
||||
- rust+dev # fd, ripgrep, hyperfine, exa, rust-analyzer
|
||||
- binutils+ld+gold+plugins # support linking with built gcc
|
||||
# styling and lints
|
||||
- astyle
|
||||
- cppcheck
|
||||
- uncrustify
|
||||
- py-fprettify
|
||||
- py-fortran-language-server
|
||||
- py-python-lsp-server
|
||||
# cli dev tools
|
||||
- ripgrep
|
||||
- gh
|
||||
- fd
|
||||
# - bfs # liburing: /usr/include/linux/ipv6.h:19:8: error: redefinition of 'struct in6_pktinfo'
|
||||
- fzf
|
||||
- tree
|
||||
- jq
|
||||
- py-yq
|
||||
- hub
|
||||
- ncdu
|
||||
- eza
|
||||
- lsd
|
||||
- hyperfine
|
||||
- htop
|
||||
- tmux
|
||||
- ccache
|
||||
# ensure we can use a jobserver build and do this fast
|
||||
- gmake
|
||||
- ninja # should be @kitware, can't be because of meson requirement
|
||||
- openssl certs=system # must be this, system external does not work
|
||||
- libtree
|
||||
- patchelf
|
||||
- sed
|
||||
- which
|
||||
- elfutils
|
||||
- fontconfig
|
||||
- font-util
|
||||
- gdb
|
||||
- flex
|
||||
- graphviz
|
||||
- doxygen
|
||||
- meson
|
||||
|
||||
ci:
|
||||
pipeline-gen:
|
||||
|
||||
@ -12,9 +12,11 @@ spack:
|
||||
all:
|
||||
prefer:
|
||||
- "%cce"
|
||||
compiler: [cce]
|
||||
providers:
|
||||
blas: [cray-libsci]
|
||||
c: [cce]
|
||||
cxx: [cce]
|
||||
fortran: [cce]
|
||||
lapack: [cray-libsci]
|
||||
mpi: [cray-mpich]
|
||||
tbb: [intel-tbb]
|
||||
|
||||
@ -7,8 +7,9 @@ spack:
|
||||
|
||||
packages:
|
||||
all:
|
||||
require: "%gcc@9.4.0 target=ppc64le"
|
||||
compiler: [gcc@9.4.0]
|
||||
prefer:
|
||||
- "%gcc@9.4.0"
|
||||
- target=ppc64le
|
||||
providers:
|
||||
blas: [openblas]
|
||||
mpi: [mpich]
|
||||
|
||||
@ -3,7 +3,6 @@ spack:
|
||||
|
||||
packages:
|
||||
all:
|
||||
compiler: [gcc@11.1.0]
|
||||
providers:
|
||||
blas: [openblas]
|
||||
mpi: [mpich]
|
||||
|
||||
@ -2,48 +2,40 @@ spack:
|
||||
view: false
|
||||
packages:
|
||||
all:
|
||||
require: target=x86_64_v3
|
||||
require:
|
||||
- target=x86_64_v3
|
||||
- '%gcc@7.5.0'
|
||||
|
||||
providers:
|
||||
mpi: [mvapich2]
|
||||
|
||||
definitions:
|
||||
#- compilers: ['%gcc@8.3.1', '%clang@10.0.0']
|
||||
- compilers: ['%gcc@7.5.0']
|
||||
|
||||
# Note skipping spot since no spack package for it
|
||||
- radiuss:
|
||||
- ascent # ^conduit@0.6.0
|
||||
- axom
|
||||
- blt
|
||||
- caliper
|
||||
- care # ~benchmarks ~examples ~tests
|
||||
- chai # ~examples
|
||||
- conduit # ^hdf5+shared
|
||||
- flux-core
|
||||
#- flux-sched
|
||||
- hypre
|
||||
- lbann
|
||||
- lvarray ~tests # per Spack issue #23192 # ~examples
|
||||
- mfem
|
||||
- py-hatchet
|
||||
- py-maestrowf
|
||||
- py-merlin
|
||||
- py-shroud
|
||||
- raja # ~examples # ~tests
|
||||
- raja-perf
|
||||
- samrai
|
||||
- scr
|
||||
- sundials
|
||||
- umpire # ~openmp
|
||||
#- visit # ^mesa-glu@9.0.0
|
||||
- xbraid
|
||||
- zfp
|
||||
|
||||
specs:
|
||||
- matrix:
|
||||
- [$radiuss]
|
||||
- [$compilers]
|
||||
- ascent # ^conduit@0.6.0
|
||||
- axom
|
||||
- blt
|
||||
- caliper
|
||||
- care # ~benchmarks ~examples ~tests
|
||||
- chai # ~examples
|
||||
- conduit # ^hdf5+shared
|
||||
- flux-core
|
||||
# - flux-sched
|
||||
- hypre
|
||||
- lbann
|
||||
- lvarray ~tests # per Spack issue #23192 # ~examples
|
||||
- mfem
|
||||
- py-hatchet
|
||||
- py-maestrowf
|
||||
- py-merlin
|
||||
- py-shroud
|
||||
- raja # ~examples # ~tests
|
||||
- raja-perf
|
||||
- samrai
|
||||
- scr
|
||||
- sundials
|
||||
- umpire # ~openmp
|
||||
# - visit # ^mesa-glu@9.0.0
|
||||
- xbraid
|
||||
- zfp
|
||||
|
||||
cdash:
|
||||
build-group: RADIUSS
|
||||
|
||||
Loading…
Reference in New Issue
Block a user