Merge branch 'mplegendre-multi_pkgsrc_roots' into develop

- This moves var/spack/packages to var/spack/repos/builtin/packages. - Packages that did not exist in the source branch, or were changed in develop, were moved into var/spack/repos/builtin/packages as part of the integration. Conflicts: lib/spack/spack/test/unit_install.py var/spack/repos/builtin/packages/clang/package.py
2016-01-17 19:42:28 -08:00
parent d802165e03 97b492756a
commit 8d6342c53d
445 changed files with 6902 additions and 840 deletions
--- a/var/spack/repos/builtin/packages/hdf5/package.py
+++ b/var/spack/repos/builtin/packages/hdf5/package.py
@@ -0,0 +1,78 @@
+from spack import *
+
+class Hdf5(Package):
+    """HDF5 is a data model, library, and file format for storing and managing
+       data. It supports an unlimited variety of datatypes, and is designed for
+       flexible and efficient I/O and for high volume and complex data.
+    """
+
+    homepage = "http://www.hdfgroup.org/HDF5/"
+    url      = "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.13/src/hdf5-1.8.13.tar.gz"
+    list_url = "http://www.hdfgroup.org/ftp/HDF5/releases"
+    list_depth = 3
+
+    version('1.8.16', 'b8ed9a36ae142317f88b0c7ef4b9c618')
+    version('1.8.15', '03cccb5b33dbe975fdcd8ae9dc021f24')
+    version('1.8.13', 'c03426e9e77d7766944654280b467289')
+
+    variant('cxx', default=True, description='Enable C++ support')
+    variant('fortran', default=True, description='Enable Fortran support')
+    variant('mpi', default=False, description='Enable MPI support')
+    variant('threadsafe', default=False, description='Enable multithreading')
+
+    depends_on("mpi", when='+mpi')
+    depends_on("zlib")
+
+    # TODO: currently hard-coded to use OpenMPI
+    def install(self, spec, prefix):
+        extra_args = []
+        if '+cxx' in spec:
+            extra_args.extend([
+                '--enable-cxx'
+            ])
+        if '+fortran' in spec:
+            extra_args.extend([
+                '--enable-fortran',
+                '--enable-fortran2003'
+            ])
+        if '+mpi' in spec:
+            # The HDF5 configure script warns if cxx and mpi are enabled
+            # together. There doesn't seem to be a real reason for this, except
+            # that parts of the MPI interface are not accessible via the C++
+            # interface. Since they are still accessible via the C interface,
+            # this is not actually a problem.
+            extra_args.extend([
+                "--enable-parallel",
+                "--enable-unsupported",
+                "CC=%s" % spec['mpi'].prefix.bin + "/mpicc",
+                "CXX=%s" % spec['mpi'].prefix.bin + "/mpic++",
+                "FC=%s" % spec['mpi'].prefix.bin + "/mpifort",
+            ])
+        if '+threads' in spec:
+            if '+cxx' in spec or '+fortran' in spec:
+                die("Cannot use variant +threads with either +cxx or +fortran")
+            extra_args.extend([
+                '--enable-threadsafe',
+                '--disable-hl',
+                'CPPFLAGS=-DHDatexit=""',
+                'CFLAGS=-DHDatexit=""'
+            ])
+
+        configure(
+            "--prefix=%s" % prefix,
+            "--with-zlib=%s" % spec['zlib'].prefix,
+            "--enable-shared",
+            *extra_args)
+
+        make()
+        make("install")
+
+    def url_for_version(self, version):
+        v = str(version)
+
+        if version == Version("1.2.2"):
+            return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + v + ".tar.gz"
+        elif version < Version("1.7"):
+            return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + version.up_to(2) + "/hdf5-" + v + ".tar.gz"
+        else:
+            return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + v + "/src/hdf5-" + v + ".tar.gz"