new package: diffsplice (#7187)

var/spack/repos/builtin/packages/diffsplice/package.py

@@ -0,0 +1,41 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Diffsplice(MakefilePackage):
+    """A novel tool for discovering and quantitating alternative splicing
+    variants present in an RNA-seq dataset, without relying on annotated
+    transcriptome or pre-determined splice pattern."""
+
+    homepage = "http://www.netlab.uky.edu/p/bioinfo/DiffSplice"
+    url      = "http://protocols.netlab.uky.edu/~yin/download/diffsplice/diffsplice_0.1.1.tgz"
+
+    version('0.1.2beta', 'a1df6e0b50968f2c229d5d7f97327336')
+    version('0.1.1',     'be90e6c072402d5aae0b4e2cbb8c10ac')
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        install('diffsplice', prefix.bin)