Packages/r factoextra (#4410)
* Add mpi support to R
* Add multiple precision math routines to R
* Updated the URL to match the version
* Remove duplicate packages
* Add packages for r-ergm and it's dependents
* Fixed depends-on types
* Correct flake8 errors
* Correct Build type
* r-factoextra and dependents
* Revert "r-factoextra and dependents"
This reverts commit afbf477fd6
.
* Add only r-factoextra files
This commit is contained in:
parent
489dde1135
commit
916243b23a
42
var/spack/repos/builtin/packages/r-dendextend/package.py
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42
var/spack/repos/builtin/packages/r-dendextend/package.py
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@ -0,0 +1,42 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RDendextend(RPackage):
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"""dendextend: Extending 'Dendrogram' Functionality in R"""
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homepage = "https://CRAN.R-project.org/package=dendextend"
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url = "https://cran.r-project.org/src/contrib/dendextend_1.5.2.tar.gz"
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list_url = "https://cran.r-project.org/src/contrib/Archive/dendextend"
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version('1.5.2', '1134869d94005727c63cf3037e2f1bbf')
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depends_on('r@3.0.0:')
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depends_on('r-magrittr@1.0.1:', type=('build', 'run'))
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depends_on('r-ggplot2', type=('build', 'run'))
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depends_on('r-fpc', type=('build', 'run'))
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depends_on('r-whisker', type=('build', 'run'))
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depends_on('r-viridis', type=('build', 'run'))
|
35
var/spack/repos/builtin/packages/r-diptest/package.py
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35
var/spack/repos/builtin/packages/r-diptest/package.py
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@ -0,0 +1,35 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
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# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
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||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
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||||
#
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# This program is distributed in the hope that it will be useful, but
|
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RDiptest(RPackage):
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"""diptest: Hartigan's Dip Test Statistic for Unimodality - Corrected"""
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homepage = "https://CRAN.R-project.org/package=diptest"
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url = "https://cran.r-project.org/src/contrib/diptest_0.75-7.tar.gz"
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list_url = "https://cran.r-project.org/src/contrib/Archive/diptest"
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version('0.75-7', '1a4a958fda763f7c99cb485dbe5954ab')
|
47
var/spack/repos/builtin/packages/r-factoextra/package.py
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47
var/spack/repos/builtin/packages/r-factoextra/package.py
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@ -0,0 +1,47 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
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# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RFactoextra(RPackage):
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"""factoextra: Extract and Visualize the Results of Multivariate Data
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Analyses"""
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homepage = "http://www.sthda.com/english/rpkgs/factoextra"
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url = "https://cran.r-project.org/src/contrib/factoextra_1.0.4.tar.gz"
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list_url = "https://cran.r-project.org/src/contrib/Archive/factoextra"
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version('1.0.4', 'aa4c81ca610f17fdee0c9f3379e35429')
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depends_on('r@3.1.0:')
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depends_on('r-ggplot2@2.2.0:', type=('build', 'run'))
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depends_on('r-abind', type=('build', 'run'))
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# depends_on('r-cluster', type=('build', 'run'))
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depends_on('r-dendextend', type=('build', 'run'))
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depends_on('r-factominer', type=('build', 'run'))
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depends_on('r-ggpubr', type=('build', 'run'))
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depends_on('r-reshape2', type=('build', 'run'))
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depends_on('r-ggrepel', type=('build', 'run'))
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depends_on('r-tidyr', type=('build', 'run'))
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46
var/spack/repos/builtin/packages/r-factominer/package.py
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46
var/spack/repos/builtin/packages/r-factominer/package.py
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@ -0,0 +1,46 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
|
||||
# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
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# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RFactominer(RPackage):
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"""FactoMineR: Multivariate Exploratory Data Analysis and Data Mining"""
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homepage = "http://factominer.free.fr"
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url = "https://cran.r-project.org/src/contrib/FactoMineR_1.35.tar.gz"
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list_url = "https://cran.r-project.org/src/contrib/Archive/FactoMineR"
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version('1.35', 'bef076181ce942016114dd7a6f5c2348')
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depends_on('r@3.3.0:')
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depends_on('r-car', type=('build', 'run'))
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# depends_on('r-cluster', type=('build', 'run'))
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depends_on('r-ellipse', type=('build', 'run'))
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depends_on('r-flashclust', type=('build', 'run'))
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# depends_on('r-lattice', type=('build', 'run'))
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depends_on('r-leaps', type=('build', 'run'))
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# depends_on('r-mass', type=('build', 'run'))
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depends_on('r-scatterplot3d', type=('build', 'run'))
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depends_on('r-knitr', type=('build', 'run'))
|
37
var/spack/repos/builtin/packages/r-flashclust/package.py
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37
var/spack/repos/builtin/packages/r-flashclust/package.py
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@ -0,0 +1,37 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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||||
#
|
||||
# This file is part of Spack.
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||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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||||
##############################################################################
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from spack import *
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class RFlashclust(RPackage):
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"""flashClust: Implementation of optimal hierarchical clustering"""
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homepage = "https://CRAN.R-project.org/package=flashClust"
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url = "https://cran.r-project.org/src/contrib/flashClust_1.01-2.tar.gz"
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list_url = "https://cran.r-project.org/src/contrib/Archive/flashClust"
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version('1.01-2', '23409aeeef98bf35d0b3d5dd755fdeff')
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depends_on('r@2.3.0:')
|
40
var/spack/repos/builtin/packages/r-flexmix/package.py
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40
var/spack/repos/builtin/packages/r-flexmix/package.py
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@ -0,0 +1,40 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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||||
# Produced at the Lawrence Livermore National Laboratory.
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||||
#
|
||||
# This file is part of Spack.
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||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class RFlexmix(RPackage):
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"""flexmix: Flexible Mixture Modeling"""
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homepage = "https://CRAN.R-project.org/package=flexmix"
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url = "https://cran.r-project.org/src/contrib/flexmix_2.3-14.tar.gz"
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list_url = "https://cran.r-project.org/src/contrib/Archive/flexmix"
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version('2.3-14', '5be4f7764e6a697f4586e60c2bf6e960')
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depends_on('r@2.15.0:')
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# depends_on('r-lattice', type=('build', 'run'))
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depends_on('r-modeltools@0.2-16:', type=('build', 'run'))
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# depends_on('r-nnet', type=('build', 'run'))
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48
var/spack/repos/builtin/packages/r-fpc/package.py
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48
var/spack/repos/builtin/packages/r-fpc/package.py
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@ -0,0 +1,48 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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||||
# Produced at the Lawrence Livermore National Laboratory.
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||||
#
|
||||
# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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||||
##############################################################################
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from spack import *
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class RFpc(RPackage):
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"""fpc: Flexible Procedures for Clustering"""
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|
||||
homepage = "http://www.homepages.ucl.ac.uk/~ucakche"
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url = "https://cran.r-project.org/src/contrib/fpc_2.1-10.tar.gz"
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||||
list_url = "https://cran.r-project.org/src/contrib/Archive/fpc"
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|
||||
version('2.1-10', '75e5340e416cd13d7751e06f1c07866b')
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|
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depends_on('r@2.0.0:')
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# depends_on('r-mass', type=('build', 'run'))
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# depends_on('r-cluster', type=('build', 'run'))
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||||
depends_on('r-mclust', type=('build', 'run'))
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||||
depends_on('r-flexmix', type=('build', 'run'))
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||||
depends_on('r-prabclus', type=('build', 'run'))
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# depends_on('r-class', type=('build', 'run'))
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depends_on('r-diptest', type=('build', 'run'))
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depends_on('r-mvtnorm', type=('build', 'run'))
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depends_on('r-robustbase', type=('build', 'run'))
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||||
depends_on('r-kernlab', type=('build', 'run'))
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depends_on('r-trimcluster', type=('build', 'run'))
|
41
var/spack/repos/builtin/packages/r-ggpubr/package.py
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41
var/spack/repos/builtin/packages/r-ggpubr/package.py
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|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RGgpubr(RPackage):
|
||||
"""ggpubr: 'ggplot2' Based Publication Ready Plots"""
|
||||
|
||||
homepage = "http://www.sthda.com/english/rpkgs/ggpubr"
|
||||
url = "https://cran.r-project.org/src/contrib/ggpubr_0.1.2.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/ggpubr"
|
||||
|
||||
version('0.1.2', '42a5749ae44121597ef511a7424429d1')
|
||||
|
||||
depends_on('r@3.1.0:')
|
||||
depends_on('r-ggplot2', type=('build', 'run'))
|
||||
depends_on('r-ggrepel', type=('build', 'run'))
|
||||
depends_on('r-ggsci', type=('build', 'run'))
|
||||
depends_on('r-plyr', type=('build', 'run'))
|
40
var/spack/repos/builtin/packages/r-ggrepel/package.py
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40
var/spack/repos/builtin/packages/r-ggrepel/package.py
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@ -0,0 +1,40 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RGgrepel(RPackage):
|
||||
"""ggrepel: Repulsive Text and Label Geoms for 'ggplot2'"""
|
||||
|
||||
homepage = "http://github.com/slowkow/ggrepel"
|
||||
url = "https://cran.r-project.org/src/contrib/ggrepel_0.6.5.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/ggrepel"
|
||||
|
||||
version('0.6.5', '7e2732cd4840efe2dc9e4bc689cf1ee5')
|
||||
|
||||
depends_on('r@3.0.0:')
|
||||
depends_on('r-ggplot2@2.0.0:', type=('build', 'run'))
|
||||
depends_on('r-rcpp', type=('build', 'run'))
|
||||
depends_on('r-scales@0.3.0:', type=('build', 'run'))
|
40
var/spack/repos/builtin/packages/r-ggsci/package.py
Normal file
40
var/spack/repos/builtin/packages/r-ggsci/package.py
Normal file
@ -0,0 +1,40 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RGgsci(RPackage):
|
||||
"""ggsci: Scientific Journal and Sci-Fi Themed Color Palettes for
|
||||
'ggplot2'"""
|
||||
|
||||
homepage = "https://github.com/road2stat/ggsci"
|
||||
url = "https://cran.r-project.org/src/contrib/ggsci_2.4.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/ggsci"
|
||||
|
||||
version('2.4', '8e5dc2fcf84352cacbb91363e26c7175')
|
||||
|
||||
depends_on('r@3.0.2:')
|
||||
depends_on('r-scales', type=('build', 'run'))
|
||||
depends_on('r-ggplot2@2.0.0:', type=('build', 'run'))
|
35
var/spack/repos/builtin/packages/r-leaps/package.py
Normal file
35
var/spack/repos/builtin/packages/r-leaps/package.py
Normal file
@ -0,0 +1,35 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RLeaps(RPackage):
|
||||
"""leaps: Regression Subset Selection"""
|
||||
|
||||
homepage = "https://CRAN.R-project.org/package=leaps"
|
||||
url = "https://cran.r-project.org/src/contrib/leaps_3.0.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/leaps"
|
||||
|
||||
version('3.0', '30823138890680e0493d1491c8f43edc')
|
38
var/spack/repos/builtin/packages/r-mclust/package.py
Normal file
38
var/spack/repos/builtin/packages/r-mclust/package.py
Normal file
@ -0,0 +1,38 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RMclust(RPackage):
|
||||
"""mclust: Gaussian Mixture Modelling for Model-Based Clustering,
|
||||
Classification, and Density Estimation"""
|
||||
|
||||
homepage = "http://www.stat.washington.edu/mclust"
|
||||
url = "https://cran.r-project.org/src/contrib/mclust_5.3.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/mclust"
|
||||
|
||||
version('5.3', '74aac9fccdfc78373ce733c1a09176ef')
|
||||
|
||||
depends_on('r@3.0.0:')
|
40
var/spack/repos/builtin/packages/r-prabclus/package.py
Normal file
40
var/spack/repos/builtin/packages/r-prabclus/package.py
Normal file
@ -0,0 +1,40 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RPrabclus(RPackage):
|
||||
"""prabclus: Functions for Clustering of Presence-Absence, Abundance and
|
||||
Multilocus Genetic Data"""
|
||||
|
||||
homepage = "http://www.homepages.ucl.ac.uk/~ucakche"
|
||||
url = "https://cran.r-project.org/src/contrib/prabclus_2.2-6.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/prabclus"
|
||||
|
||||
version('2.2-6', '7f835dcc113243e1db74aad28ce93d11')
|
||||
|
||||
depends_on('r@2.1.0:')
|
||||
# depends_on('r-mass', type=('build', 'run'))
|
||||
depends_on('r-mclust', type=('build', 'run'))
|
37
var/spack/repos/builtin/packages/r-scatterplot3d/package.py
Normal file
37
var/spack/repos/builtin/packages/r-scatterplot3d/package.py
Normal file
@ -0,0 +1,37 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RScatterplot3d(RPackage):
|
||||
"""scatterplot3d: 3D Scatter Plot"""
|
||||
|
||||
homepage = "https://CRAN.R-project.org/package=scatterplot3d"
|
||||
url = "https://cran.r-project.org/src/contrib/scatterplot3d_0.3-40.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/scatterplot3d"
|
||||
|
||||
version('0.3-40', '67b9ab6131d244d7fc1db39dcc911dfe')
|
||||
|
||||
depends_on('r@2.7.0:')
|
37
var/spack/repos/builtin/packages/r-trimcluster/package.py
Normal file
37
var/spack/repos/builtin/packages/r-trimcluster/package.py
Normal file
@ -0,0 +1,37 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RTrimcluster(RPackage):
|
||||
"""trimcluster: Cluster analysis with trimming"""
|
||||
|
||||
homepage = "http://www.homepages.ucl.ac.uk/~ucakche"
|
||||
url = "https://cran.r-project.org/src/contrib/trimcluster_0.1-2.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/trimcluster"
|
||||
|
||||
version('0.1-2', '7617920e224bd18f5b87db38a3116ec2')
|
||||
|
||||
depends_on('r@1.9.0:')
|
40
var/spack/repos/builtin/packages/r-viridis/package.py
Normal file
40
var/spack/repos/builtin/packages/r-viridis/package.py
Normal file
@ -0,0 +1,40 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RViridis(RPackage):
|
||||
"""viridis: Default Color Maps from 'matplotlib'"""
|
||||
|
||||
homepage = "https://github.com/sjmgarnier/viridis"
|
||||
url = "https://cran.r-project.org/src/contrib/viridis_0.4.0.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/viridis"
|
||||
|
||||
version('0.4.0', 'f874384cbedf459f6c309ddb40b354ea')
|
||||
|
||||
depends_on('r@2.1.0:')
|
||||
depends_on('r-viridislite@0.2.0:', type=('build', 'run'))
|
||||
depends_on('r-ggplot2@1.0.1:', type=('build', 'run'))
|
||||
depends_on('r-gridextra', type=('build', 'run'))
|
37
var/spack/repos/builtin/packages/r-viridislite/package.py
Normal file
37
var/spack/repos/builtin/packages/r-viridislite/package.py
Normal file
@ -0,0 +1,37 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/llnl/spack
|
||||
# Please also see the LICENSE file for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
from spack import *
|
||||
|
||||
|
||||
class RViridislite(RPackage):
|
||||
"""viridisLite: Default Color Maps from 'matplotlib' (Lite Version)"""
|
||||
|
||||
homepage = "https://github.com/sjmgarnier/viridisLite"
|
||||
url = "https://cran.r-project.org/src/contrib/viridisLite_0.2.0.tar.gz"
|
||||
list_url = "https://cran.r-project.org/src/contrib/Archive/viridisLite"
|
||||
|
||||
version('0.2.0', '04a04415cf651a2b5f964b261896c0fb')
|
||||
|
||||
depends_on('r@2.1.0:')
|
Loading…
Reference in New Issue
Block a user