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trinotate: remove perl-dbd-mysql, move runtime files to HOME (#9850)

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Justin Stanley 2019-01-22 14:26:31 -06:00 committed by Levi Baber
parent 7baea68278
commit 9252f7f957
1 changed files with 8 additions and 1 deletions
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9
var/spack/repos/builtin/packages/trinotate/package.py
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@ -26,7 +26,6 @@ class Trinotate(Package):
depends_on('perl', type='run') depends_on('perl', type='run')
depends_on('lighttpd', type='run') depends_on('lighttpd', type='run')
depends_on('perl-dbi', type='run') depends_on('perl-dbi', type='run')
depends_on('perl-dbd-mysql', type='run')
depends_on('perl-cgi', type='run') depends_on('perl-cgi', type='run')
depends_on('perl-dbd-sqlite', type='run') depends_on('perl-dbd-sqlite', type='run')
@ -35,6 +34,14 @@ def patch(self):
perlscripts = glob.glob('*.pl') perlscripts = glob.glob('*.pl')
filter_file('#!/usr/bin/perl', '#!/usr/bin/env perl', *perlscripts) filter_file('#!/usr/bin/perl', '#!/usr/bin/env perl', *perlscripts)
# trinotate web generates a config on run but puts it in a bad place
# this causes issues with permissions; we hack the source to keep it
# in the calling user's homedir
filter_file('"$FindBin::RealBin/TrinotateWeb.conf/lighttpd.conf.port',
'$ENV{"HOME"} . "/.trinotate_lighttpd.conf.port',
'run_TrinotateWebserver.pl', string=True)
def install(self, spec, prefix): def install(self, spec, prefix):
# most of the perl modules have local deps, install the whole tree # most of the perl modules have local deps, install the whole tree
mkdirp(prefix.lib) mkdirp(prefix.lib)