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new package: r-glmgampoi (#32366)

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* new package: r-glmgampoi

* Remove duplicate depends_on directive
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Glenn Johnson 2022-08-25 13:50:11 -05:00 committed by GitHub
parent 883b96aeb5
commit 925a99a043
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# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class RGlmgampoi(RPackage):
"""Fit a Gamma-Poisson Generalized Linear Model.
Fit linear models to overdispersed count data. The package can estimate
the overdispersion and fit repeated models for matrix input. It is designed
to handle large input datasets as they typically occur in single cell
RNA-seq experiments."""
bioc = "glmGamPoi"
version("1.8.0", commit="b723d61e05c1ad50a3cf6a6393ec3d97adc7edb4")
depends_on("r-rcpp", type=("build", "run"))
depends_on("r-delayedmatrixstats", type=("build", "run"))
depends_on("r-matrixstats", type=("build", "run"))
depends_on("r-delayedarray", type=("build", "run"))
depends_on("r-hdf5array", type=("build", "run"))
depends_on("r-summarizedexperiment", type=("build", "run"))
depends_on("r-biocgenerics", type=("build", "run"))
depends_on("r-rcpparmadillo", type=("build", "run"))
depends_on("r-beachmat", type=("build", "run"))