New Package Qualimap:2.2.1 (#26615)

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>

var/spack/repos/builtin/packages/qualimap/package.py

@@ -0,0 +1,26 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Qualimap(Package):
+    """Qualimap 2 is a platform-independent application written in Java
+    and R that provides both a Graphical User Inteface (GUI) and a
+    command-line interface to facilitate the quality control of alignment
+    sequencing data and its derivatives like feature counts."""
+
+    homepage = "http://qualimap.conesalab.org/"
+    url      = "https://bitbucket.org/kokonech/qualimap/downloads/qualimap_v2.2.1.zip"
+
+    version('2.2.1', sha256='08f1d66e49c83c76c56c4225c53aee44f41e0592c8bdc84b8c4ecd975700e045')
+
+    depends_on('java', type='run')
+
+    def setup_run_environment(self, env):
+        env.prepend_path('PATH', prefix)
+
+    def install(self, spec, prefix):
+        install_tree('.', prefix)