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py-htseq: Create new package. (#6623)

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lingnanyuan 2017-12-08 03:36:57 -06:00 committed by Massimiliano Culpo
parent 20fc7d56d7
commit 96476a32e5
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyHtseq(PythonPackage):
"""HTSeq is a Python package that provides infrastructure to process
data from high-throughput sequencing assays."""
homepage = "http://htseq.readthedocs.io/en/release_0.9.1/overview.html"
url = "https://github.com/simon-anders/htseq/archive/release_0.9.1.tar.gz"
version('0.9.1', '269e7de5d39fc31f609cccd4a4740e61')
depends_on('py-setuptools', type='build')
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-pysam', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('py-cython', type=('build', 'run'))
depends_on('swig', type=('build', 'run'))