Merge branch 'develop' into features/boost-additive-libs

var/spack/mock_configs/site_spackconfig/compilers.yaml

@@ -1,12 +0,0 @@
-compilers:
-  all:
-    clang@3.3:
-      cc: /path/to/clang
-      cxx: /path/to/clang++
-      f77: None
-      fc: None
-    gcc@4.5.0:
-      cc: /path/to/gcc
-      cxx: /path/to/g++
-      f77: /path/to/gfortran
-      fc: /path/to/gfortran

var/spack/packages/R/package.py

@@ -1,33 +0,0 @@
-from spack import *
-
-class R(Package):
-    """R is 'GNU S', a freely available language and environment for
-       statistical computing and graphics which provides a wide va
-       riety of statistical and graphical techniques: linear and
-       nonlinear modelling, statistical tests, time series analysis,
-       classification, clustering, etc. Please consult the R project
-       homepage for further information."""
-    homepage = "http://www.example.com"
-    url      = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
-
-    version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74')
-
-    depends_on("readline")
-    depends_on("ncurses")
-    depends_on("icu")
-    depends_on("glib")
-    depends_on("zlib")
-    depends_on("libtiff")
-    depends_on("jpeg")
-    depends_on("cairo")
-    depends_on("pango")
-    depends_on("freetype")
-    depends_on("tcl")
-    depends_on("tk")
-
-    def install(self, spec, prefix):
-        configure("--prefix=%s" % prefix,
-                  "--enable-R-shlib",
-                  "--enable-BLAS-shlib")
-        make()
-        make("install")

var/spack/packages/clang/package.py

@@ -1,95 +0,0 @@
-##############################################################################
-# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
-#
-# This file is part of Spack.
-# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/llnl/spack
-# Please also see the LICENSE file for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU General Public License (as published by
-# the Free Software Foundation) version 2.1 dated February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public License
-# along with this program; if not, write to the Free Software Foundation,
-# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
-
-
-from spack import *
-
-import os
-import os.path
-
-class Clang(Package):
-    """The goal of the Clang project is to create a new C, C++,
-       Objective C and Objective C++ front-end for the LLVM compiler.
-    """
-    homepage = 'http://clang.llvm.org'
-    url = 'http://llvm.org/releases/3.7.0/cfe-3.7.0.src.tar.xz'
-
-    depends_on('llvm@3.7.0', when='@3.7.0')
-    depends_on('llvm@3.6.2', when='@3.6.2')
-    depends_on('llvm@3.5.1', when='@3.5.1')
-
-    version('3.7.0', '8f9d27335e7331cf0a4711e952f21f01', url='http://llvm.org/releases/3.7.0/cfe-3.7.0.src.tar.xz')
-    version('3.6.2', 'ff862793682f714bb7862325b9c06e20', url='http://llvm.org/releases/3.6.2/cfe-3.6.2.src.tar.xz')
-    version('3.5.1', '93f9532f8f7e6f1d8e5c1116907051cb', url='http://llvm.org/releases/3.5.1/cfe-3.5.1.src.tar.xz')
-
-    ##########
-    # @3.7.0
-    resource(name='clang-tools-extra',
-             url='http://llvm.org/releases/3.7.0/clang-tools-extra-3.7.0.src.tar.xz',
-             md5='d5a87dacb65d981a427a536f6964642e', destination='tools', when='@3.7.0')
-    ##########
-
-    def install(self, spec, prefix):
-        env['CXXFLAGS'] = self.compiler.cxx11_flag
-
-        with working_dir('spack-build', create=True):
-
-            options = []
-            if '@3.7.0:' in spec:
-                options.append('-DCLANG_DEFAULT_OPENMP_RUNTIME:STRING=libomp')
-            options.extend(std_cmake_args)
-
-            cmake('..',
-                  '-DCLANG_PATH_TO_LLVM_BUILD:PATH=%s' % spec['llvm'].prefix,
-                  '-DLLVM_MAIN_SRC_DIR:PATH=%s' % spec['llvm'].prefix,
-                  *options)
-            make()
-            make("install")
-            # CLang doesn't look in llvm folders for system headers...
-            self.link_llvm_directories(spec)
-
-    def link_llvm_directories(self, spec):
-
-        def clang_include_dir_at(root):
-            return join_path(root, 'include')
-
-        def clang_lib_dir_at(root):
-            return join_path(root, 'lib/clang/', str(self.version), 'include')
-
-        def do_link(source_dir, destination_dir):
-            if os.path.exists(source_dir):
-                for name in os.listdir(source_dir):
-                    source = join_path(source_dir, name)
-                    link = join_path(destination_dir, name)
-                    os.symlink(source, link)
-
-        # Link folder and files in include
-        llvm_dir = clang_include_dir_at(spec['llvm'].prefix)
-        clang_dir = clang_include_dir_at(self.prefix)
-        do_link(llvm_dir, clang_dir)
-        # Link folder and files in lib
-        llvm_dir = clang_lib_dir_at(spec['llvm'].prefix)
-        clang_dir = clang_lib_dir_at(self.prefix)
-        do_link(llvm_dir, clang_dir)

var/spack/packages/llvm/package.py

@@ -1,72 +0,0 @@
-##############################################################################
-# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
-#
-# This file is part of Spack.
-# Written by David Beckingsale, david@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/llnl/spack
-# Please also see the LICENSE file for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU General Public License (as published by
-# the Free Software Foundation) version 2.1 dated February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public License
-# along with this program; if not, write to the Free Software Foundation,
-# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
-from spack import *
-
-
-class Llvm(Package):
-    """The LLVM Project is a collection of modular and reusable compiler and
-       toolchain technologies. Despite its name, LLVM has little to do with
-       traditional virtual machines, though it does provide helpful libraries
-       that can be used to build them. The name "LLVM" itself is not an acronym;
-       it is the full name of the project.
-    """
-    homepage = 'http://llvm.org/'
-    url = 'http://llvm.org/releases/3.7.0/llvm-3.7.0.src.tar.xz'
-
-    version('3.7.0', 'b98b9495e5655a672d6cb83e1a180f8e', url='http://llvm.org/releases/3.7.0/llvm-3.7.0.src.tar.xz')
-    version('3.6.2', '0c1ee3597d75280dee603bae9cbf5cc2', url='http://llvm.org/releases/3.6.2/llvm-3.6.2.src.tar.xz')
-    version('3.5.1', '2d3d8004f38852aa679e5945b8ce0b14', url='http://llvm.org/releases/3.5.1/llvm-3.5.1.src.tar.xz')
-    version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') # currently required by mesa package
-
-    depends_on('python@2.7:')
-
-    variant('libcxx', default=False, description="Builds the LLVM Standard C++ library targeting C++11")
-
-    ##########
-    # @3.7.0
-    resource(name='compiler-rt',
-             url='http://llvm.org/releases/3.7.0/compiler-rt-3.7.0.src.tar.xz', md5='383c10affd513026f08936b5525523f5',
-             destination='projects', when='@3.7.0')
-    resource(name='openmp',
-             url='http://llvm.org/releases/3.7.0/openmp-3.7.0.src.tar.xz', md5='f482c86fdead50ba246a1a2b0bbf206f',
-             destination='projects', when='@3.7.0')
-    resource(name='libcxx',
-             url='http://llvm.org/releases/3.7.0/libcxx-3.7.0.src.tar.xz', md5='46aa5175cbe1ad42d6e9c995968e56dd',
-             destination='projects', placement='libcxx', when='+libcxx@3.7.0')
-    resource(name='libcxxabi',
-             url='http://llvm.org/releases/3.7.0/libcxxabi-3.7.0.src.tar.xz', md5='5aa769e2fca79fa5335cfae8f6258772',
-             destination='projects', placement='libcxxabi', when='+libcxx@3.7.0')
-    ##########
-
-    def install(self, spec, prefix):
-        env['CXXFLAGS'] = self.compiler.cxx11_flag
-
-        with working_dir('spack-build', create=True):
-            cmake('..',
-                  '-DLLVM_REQUIRES_RTTI:BOOL=ON',
-                  '-DPYTHON_EXECUTABLE:PATH=%s/bin/python' % spec['python'].prefix,
-                  *std_cmake_args)
-            make()
-            make("install")

var/spack/packages/metis/package.py

@@ -1,27 +0,0 @@
-from spack import *
-
-class Metis(Package):
-    """METIS is a set of serial programs for partitioning graphs,
-       partitioning finite element meshes, and producing fill reducing
-       orderings for sparse matrices. The algorithms implemented in
-       METIS are based on the multilevel recursive-bisection,
-       multilevel k-way, and multi-constraint partitioning schemes."""
-
-    homepage = "http://glaros.dtc.umn.edu/gkhome/metis/metis/overview"
-    url      = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz"
-
-    version('5.1.0', '5465e67079419a69e0116de24fce58fe')
-
-    depends_on('mpi')
-
-    def install(self, spec, prefix):
-        cmake(".",
-              '-DGKLIB_PATH=%s/GKlib' % pwd(),
-              '-DSHARED=1',
-              '-DCMAKE_C_COMPILER=mpicc',
-              '-DCMAKE_CXX_COMPILER=mpicxx',
-              '-DSHARED=1',
-              *std_cmake_args)
-
-        make()
-        make("install")

var/spack/packages/parmetis/package.py

@@ -1,26 +0,0 @@
-from spack import *
-
-class Parmetis(Package):
-    """ParMETIS is an MPI-based parallel library that implements a
-       variety of algorithms for partitioning unstructured graphs,
-       meshes, and for computing fill-reducing orderings of sparse
-       matrices."""
-    homepage = "http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview"
-    url      = "http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/parmetis-4.0.3.tar.gz"
-
-    version('4.0.3', 'f69c479586bf6bb7aff6a9bc0c739628')
-
-    depends_on('mpi')
-
-    def install(self, spec, prefix):
-        cmake(".",
-              '-DGKLIB_PATH=%s/metis/GKlib' % pwd(),
-              '-DMETIS_PATH=%s/metis' % pwd(),
-              '-DSHARED=1',
-              '-DCMAKE_C_COMPILER=mpicc',
-              '-DCMAKE_CXX_COMPILER=mpicxx',
-              '-DSHARED=1',
-              *std_cmake_args)
-
-        make()
-        make("install")

var/spack/repos/builtin.mock/repo.yaml

@@ -0,0 +1,2 @@
+repo:
+  namespace: builtin.mock

var/spack/repos/builtin/packages/R/package.py

@@ -0,0 +1,49 @@
+from spack import *
+
+
+class R(Package):
+    """
+    R is 'GNU S', a freely available language and environment for statistical computing and graphics which provides a
+    wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series
+    analysis, classification, clustering, etc. Please consult the R project homepage for further information.
+    """
+    homepage = "https://www.r-project.org"
+    url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
+
+    version('3.2.3', '1ba3dac113efab69e706902810cc2970')
+    version('3.2.2', '57cef5c2e210a5454da1979562a10e5b')
+    version('3.2.1', 'c2aac8b40f84e08e7f8c9068de9239a3')
+    version('3.2.0', '66fa17ad457d7e618191aa0f52fc402e')
+    version('3.1.3', '53a85b884925aa6b5811dfc361d73fc4')
+    version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74')
+
+    variant('external-lapack', default=False, description='Links to externally installed BLAS/LAPACK')
+
+    # Virtual dependencies
+    depends_on('blas', when='+external-lapack')
+    depends_on('lapack', when='+external-lapack')
+
+    # Concrete dependencies
+    depends_on('readline')
+    depends_on('ncurses')
+    depends_on('icu')
+    depends_on('glib')
+    depends_on('zlib')
+    depends_on('libtiff')
+    depends_on('jpeg')
+    depends_on('cairo')
+    depends_on('pango')
+    depends_on('freetype')
+    depends_on('tcl')
+    depends_on('tk')
+
+    def install(self, spec, prefix):
+        options = ['--prefix=%s' % prefix,
+                   '--enable-R-shlib',
+                   '--enable-BLAS-shlib']
+        if '+external-lapack' in spec:
+            options.extend(['--with-blas', '--with-lapack'])
+
+        configure(*options)
+        make()
+        make('install')

var/spack/repos/builtin/packages/binutils/cr16.patch

@@ -0,0 +1,26 @@
+--- old/opcodes/cr16-dis.c	2014-10-14 03:32:04.000000000 -0400
++++ new/opcodes/cr16-dis.c	2016-01-14 21:54:26.000000000 -0500
+@@ -78,7 +78,7 @@
+ REG_ARG_TYPE;
+ 
+ /* Current opcode table entry we're disassembling.  */
+-const inst *instruction;
++extern const inst *instruction;
+ /* Current instruction we're disassembling.  */
+ ins cr16_currInsn;
+ /* The current instruction is read into 3 consecutive words.  */
+@@ -86,12 +86,12 @@
+ /* Contains all words in appropriate order.  */
+ ULONGLONG cr16_allWords;
+ /* Holds the current processed argument number.  */
+-int processing_argument_number;
++extern int processing_argument_number;
+ /* Nonzero means a IMM4 instruction.  */
+ int imm4flag;
+ /* Nonzero means the instruction's original size is
+    incremented (escape sequence is used).  */
+-int size_changed;
++extern int size_changed;
+ 
+ 
+ /* Print the constant expression length.  */

var/spack/repos/builtin/packages/binutils/package.py

@@ -11,8 +11,11 @@ class Binutils(Package):
 
     # Add a patch that creates binutils libiberty_pic.a which is preferred by OpenSpeedShop and cbtf-krell
     variant('krellpatch', default=False, description="build with openspeedshop based patch.")
+    variant('gold', default=True, description="build the gold linker")
     patch('binutilskrell-2.24.patch', when='@2.24+krellpatch')
 
+    patch('cr16.patch')
+
     variant('libiberty', default=False, description='Also install libiberty.')
 
     def install(self, spec, prefix):
@@ -26,6 +29,9 @@ def install(self, spec, prefix):
             '--enable-targets=all',
             '--with-sysroot=/']
 
+        if '+gold' in spec:
+            configure_args.append('--enable-gold')
+
         if '+libiberty' in spec:
             configure_args.append('--enable-install-libiberty')
 

var/spack/repos/builtin/packages/cairo/package.py

@@ -14,6 +14,7 @@ class Cairo(Package):
 
     def install(self, spec, prefix):
         configure("--prefix=%s" % prefix,
+                  "--disable-trace", # can cause problems with libiberty
                   "--enable-tee")
         make()
         make("install")

var/spack/repos/builtin/packages/cereal/Werror.patch

@@ -0,0 +1,33 @@
+--- old/sandbox/CMakeLists.txt
++++ new/sandbox/CMakeLists.txt
+@@ -4,9 +4,11 @@
+ add_executable(sandbox_json sandbox_json.cpp)
+ add_executable(sandbox_rtti sandbox_rtti.cpp)
+
++if(Boost_FOUND)
+ add_executable(sandbox_vs sandbox_vs.cpp)
+ target_link_libraries(sandbox_vs sandbox_vs_dll)
+ include_directories(sandbox_shared_lib)
++endif(Boost_FOUND)
+
+ if(Boost_FOUND)
+   add_executable(performance performance.cpp)
+--- old/include/cereal/types/common.hpp
++++ new/include/cereal/types/common.hpp
+@@ -106,14 +106,16 @@
+     t = reinterpret_cast<typename common_detail::is_enum<T>::type const &>( value );
+   }
+
++#ifndef CEREAL_ENABLE_RAW_POINTER_SERIALIZATION
+   //! Serialization for raw pointers
+   /*! This exists only to throw a static_assert to let users know we don't support raw pointers. */
+   template <class Archive, class T> inline
+   void CEREAL_SERIALIZE_FUNCTION_NAME( Archive &, T * & )
+   {
+     static_assert(cereal::traits::detail::delay_static_assert<T>::value,
+       "Cereal does not support serializing raw pointers - please use a smart pointer");
+   }
++#endif
+
+   //! Serialization for C style arrays
+   template <class Archive, class T> inline

var/spack/repos/builtin/packages/cereal/package.py

@@ -0,0 +1,34 @@
+from spack import *
+import shutil
+
+class Cereal(Package):
+    """cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone."""
+    homepage = "http://uscilab.github.io/cereal/"
+    url      = "https://github.com/USCiLab/cereal/archive/v1.1.2.tar.gz"
+
+    version('1.1.2', '34d4ad174acbff005c36d4d10e48cbb9')
+    version('1.1.1', '0ceff308c38f37d5b5f6df3927451c27')
+    version('1.1.0', '9f2d5f72e935c54f4c6d23e954ce699f')
+    version('1.0.0', 'd1bacca70a95cec0ddbff68b0871296b')
+    version('0.9.1', '8872d4444ff274ce6cd1ed364d0fc0ad')
+
+    patch("Werror.patch")
+
+    depends_on("cmake @2.6.2:")
+
+    def install(self, spec, prefix):
+        # Don't use -Werror
+        filter_file(r'-Werror', '', 'CMakeLists.txt')
+
+        # configure
+        # Boost is only used for self-tests, which we are not running (yet?)
+        cmake('.', '-DCMAKE_DISABLE_FIND_PACKAGE_Boost=TRUE', *std_cmake_args)
+
+        # Build
+        make()
+
+        # Install
+        shutil.rmtree(join_path(prefix, 'doc'), ignore_errors=True)
+        shutil.rmtree(join_path(prefix, 'include'), ignore_errors=True)
+        shutil.copytree('doc', join_path(prefix, 'doc'), symlinks=True)
+        shutil.copytree('include', join_path(prefix, 'include'), symlinks=True)

var/spack/repos/builtin/packages/cgal/package.py

@@ -0,0 +1,73 @@
+##############################################################################
+# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License (as published by
+# the Free Software Foundation) version 2.1 dated February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public License
+# along with this program; if not, write to the Free Software Foundation,
+# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class Cgal(Package):
+    """
+    CGAL is a software project that provides easy access to efficient and reliable geometric algorithms in the form of
+    a C++ library. CGAL is used in various areas needing geometric computation, such as geographic information systems,
+    computer aided design, molecular biology, medical imaging, computer graphics, and robotics.
+    """
+    homepage = 'http://www.cgal.org/'
+    url = 'https://github.com/CGAL/cgal/archive/releases/CGAL-4.7.tar.gz'
+
+    version('4.7', '4826714810f3b4c65cac96b90fb03b67')
+    version('4.6.3', 'e8ee2ecc8d2b09b94a121c09257b576d')
+
+    # Installation instructions : http://doc.cgal.org/latest/Manual/installation.html
+    variant('shared', default=True, description='Enables the build of shared libraries')
+    variant('debug', default=False, description='Builds a debug version of the libraries')
+
+    depends_on('boost')
+    depends_on('mpfr')
+    depends_on('gmp')
+    depends_on('zlib')
+
+    # FIXME : Qt5 dependency missing (needs Qt5 and OpenGL)
+    # FIXME : Optional third party libraries missing
+
+    def install(self, spec, prefix):
+
+        options = []
+        options.extend(std_cmake_args)
+        # CGAL supports only Release and Debug build type. Any other build type will raise an error at configure time
+        if '+debug' in spec:
+            options.append('-DCMAKE_BUILD_TYPE:STRING=Debug')
+        else:
+            options.append('-DCMAKE_BUILD_TYPE:STRING=Release')
+
+        if '+shared' in spec:
+            options.append('-DBUILD_SHARED_LIBS:BOOL=ON')
+        else:
+            options.append('-DBUILD_SHARED_LIBS:BOOL=OFF')
+
+        build_directory = join_path(self.stage.path, 'spack-build')
+        source_directory = self.stage.source_path
+        with working_dir(build_directory, create=True):
+            cmake(source_directory, *options)
+            make()
+            make("install")

var/spack/repos/builtin/packages/cmake/package.py

@@ -31,15 +31,16 @@ class Cmake(Package):
 
     version('2.8.10.2', '097278785da7182ec0aea8769d06860c',
             url = 'http://www.cmake.org/files/v2.8/cmake-2.8.10.2.tar.gz')
- 
+
     version('3.0.2', 'db4c687a31444a929d2fdc36c4dfb95f',
             url = 'http://www.cmake.org/files/v3.0/cmake-3.0.2.tar.gz')
- 
-    version('3.4.0', 'cd3034e0a44256a0917e254167217fc8',
-            url = 'https://cmake.org/files/v3.4/cmake-3.4.0.tar.gz')
 
-#    version('3.0.1', 'e2e05d84cb44a42f1371d9995631dcf5')
-#    version('3.0.0', '21a1c85e1a3b803c4b48e7ff915a863e')
+    version('3.4.0', 'cd3034e0a44256a0917e254167217fc8',
+            url = 'http://cmake.org/files/v3.4/cmake-3.4.0.tar.gz')
+
+    variant('ncurses', default=True, description='Enables the build of the ncurses gui')
+
+    depends_on('ncurses', when='+ncurses')
 
     def install(self, spec, prefix):
         configure('--prefix='   + prefix,

var/spack/repos/builtin/packages/eigen/package.py

@@ -0,0 +1,68 @@
+##############################################################################
+# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Written by David Beckingsale, david@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License (as published by
+# the Free Software Foundation) version 2.1 dated February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public License
+# along with this program; if not, write to the Free Software Foundation,
+# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class Eigen(Package):
+    """
+    Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms
+    """
+
+    homepage = 'http://eigen.tuxfamily.org/'
+    url = 'http://bitbucket.org/eigen/eigen/get/3.2.7.tar.bz2'
+
+    version('3.2.7', 'cc1bacbad97558b97da6b77c9644f184', url='http://bitbucket.org/eigen/eigen/get/3.2.7.tar.bz2')
+
+    variant('debug', default=False, description='Builds the library in debug mode')
+
+    variant('metis', default=True, description='Enables metis backend')
+    variant('scotch', default=True, description='Enables scotch backend')
+    variant('fftw', default=True, description='Enables FFTW backend')
+
+    # TODO : dependency on SuiteSparse, googlehash, superlu, adolc missing
+
+    depends_on('metis', when='+metis')
+    depends_on('scotch', when='+scotch')
+    depends_on('fftw', when='+fftw')
+
+    depends_on('mpfr@2.3.0:')  # Eigen 3.2.7 requires at least 2.3.0
+    depends_on('gmp')
+
+    def install(self, spec, prefix):
+
+        options = []
+        options.extend(std_cmake_args)
+
+        build_directory = join_path(self.stage.path, 'spack-build')
+        source_directory = self.stage.source_path
+
+        if '+debug' in spec:
+            options.append('-DCMAKE_BUILD_TYPE:STRING=Debug')
+
+        with working_dir(build_directory, create=True):
+            cmake(source_directory, *options)
+            make()
+            make("install")

var/spack/repos/builtin/packages/fltk/font.patch

@@ -0,0 +1,44 @@
+Index: FL/x.H
+===================================================================
+--- a/FL/x.H	(revision 10476)
++++ b/FL/x.H	(working copy)
+@@ -132,6 +132,7 @@
+   XFontStruct *ptr;
+ };
+ extern FL_EXPORT Fl_XFont_On_Demand fl_xfont;
++extern FL_EXPORT XFontStruct* fl_core_font();
+
+ // this object contains all X-specific stuff about a window:
+ // Warning: this object is highly subject to change!
+Index: src/fl_font.cxx
+===================================================================
+--- a/src/fl_font.cxx	(revision 10476)
++++ b/src/fl_font.cxx	(working copy)
+@@ -55,6 +55,14 @@
+ #  include "fl_font_x.cxx"
+ #endif // WIN32
+
++#ifdef WIN32
++#elif defined(__APPLE__)
++#else
++XFontStruct *fl_core_font()
++{
++  return fl_xfont.value();
++}
++#endif
+
+ double fl_width(const char* c) {
+   if (c) return fl_width(c, (int) strlen(c));
+Index: src/gl_draw.cxx
+===================================================================
+--- a/src/gl_draw.cxx	(revision 10476)
++++ b/src/gl_draw.cxx	(working copy)
+@@ -84,7 +84,7 @@
+  * then sorting through them at draw time (for normal X rendering) to find which one can
+  * render the current glyph... But for now, just use the first font in the list for GL...
+  */
+-    XFontStruct *font = fl_xfont;
++    XFontStruct *font = fl_core_font();
+     int base = font->min_char_or_byte2;
+     int count = font->max_char_or_byte2-base+1;
+     fl_fontsize->listbase = glGenLists(256);

var/spack/repos/builtin/packages/fltk/package.py

@@ -0,0 +1,58 @@
+##############################################################################
+# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License (as published by
+# the Free Software Foundation) version 2.1 dated February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public License
+# along with this program; if not, write to the Free Software Foundation,
+# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Fltk(Package):
+    """
+    FLTK (pronounced "fulltick") is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and
+    MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its
+    built-in GLUT emulation.
+
+    FLTK is designed to be small and modular enough to be statically linked, but works fine as a shared library. FLTK
+    also includes an excellent UI builder called FLUID that can be used to create applications in minutes.
+    """
+    homepage = 'http://www.fltk.org/'
+    url = 'http://fltk.org/pub/fltk/1.3.3/fltk-1.3.3-source.tar.gz'
+
+    version('1.3.3', '9ccdb0d19dc104b87179bd9fd10822e3')
+
+    patch('font.patch', when='@1.3.3')
+
+    variant('shared', default=True, description='Enables the build of shared libraries')
+
+    def install(self, spec, prefix):
+        options = ['--prefix=%s' % prefix,
+                   '--enable-localjpeg',
+                   '--enable-localpng',
+                   '--enable-localzlib']
+
+        if '+shared' in spec:
+            options.append('--enable-shared')
+
+        # FLTK needs to be built in-source
+        configure(*options)
+        make()
+        make('install')