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r-bumphunter: new package (#5824)

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* r-bumphunter: created new package

* r-bumphunter: added description
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Yifan Zhu 2017-10-24 04:09:38 -05:00 committed by Todd Gamblin
parent 161dca6d5d
commit 968144f1c5
1 changed files with 50 additions and 0 deletions
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RBumphunter(RPackage):
"""Tools for finding bumps in genomic data"""
homepage = "http://bioconductor.org/packages/bumphunter/"
url = "https://git.bioconductor.org/packages/bumphunter"
list_url = homepage
version('1.16.0', git='https://git.bioconductor.org/packages/bumphunter', commit='1c3ab4d1fd2d75b1586ccef12665960b3602080a')
depends_on('r-s4vectors', type=('build', 'run'))
depends_on('r-iranges', type=('build', 'run'))
depends_on('r-genomeinfodb', type=('build', 'run'))
depends_on('r-genomicranges', type=('build', 'run'))
depends_on('r-foreach', type=('build', 'run'))
depends_on('r-iterators', type=('build', 'run'))
depends_on('r-locfit', type=('build', 'run'))
depends_on('r-matrixstats', type=('build', 'run'))
depends_on('r-limma', type=('build', 'run'))
depends_on('r-dorng', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-genomicfeatures', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r@3.4.0:3.4.9', when='@1.16.0')