Alinux isc buildcache (#30462)
Add two new stacks targeted at x86_64 and arm, representing an initial list of packages used by current and planned AWS Workshops, and built in conjunction with the ISC22 announcement of the spack public binary cache. Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
This commit is contained in:
Evan Bollig
@@ -52,12 +52,22 @@ default:
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- runner_system_failure
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- stuck_or_timeout_failure
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.generate-aarch64:
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extends: [ ".generate" ]
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tags: ["spack", "aws", "public", "medium", "aarch64"]
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.pr-generate:
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extends: [ ".pr", ".generate" ]
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.pr-generate-aarch64:
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extends: [ ".pr", ".generate-aarch64" ]
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.protected-generate:
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extends: [ ".protected", ".generate" ]
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.protected-generate-aarch64:
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extends: [ ".protected", ".generate-aarch64" ]
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.build:
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stage: build
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@@ -423,6 +433,86 @@ data-vis-sdk-protected-build:
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- artifacts: True
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job: data-vis-sdk-protected-generate
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########################################
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# AWS ISC Applications (x86_64)
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########################################
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# Call this AFTER .*-generate
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.aws-isc-overrides:
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# This controls image for generate step; build step is controlled by spack.yaml
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# Note that generator emits OS info for build so these should be the same.
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image: { "name": "ghcr.io/spack/e4s-amazonlinux-2:v2022-03-21", "entrypoint": [""] }
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.aws-isc:
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variables:
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SPACK_CI_STACK_NAME: aws-isc
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aws-isc-pr-generate:
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extends: [ ".aws-isc", ".pr-generate", ".aws-isc-overrides" ]
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tags: ["spack", "public", "medium", "x86_64_v4"]
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aws-isc-protected-generate:
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extends: [ ".aws-isc", ".protected-generate", ".aws-isc-overrides" ]
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tags: ["spack", "public", "medium", "x86_64_v4"]
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aws-isc-pr-build:
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extends: [ ".aws-isc", ".pr-build" ]
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trigger:
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include:
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- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
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job: aws-isc-pr-generate
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strategy: depend
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needs:
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- artifacts: True
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job: aws-isc-pr-generate
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aws-isc-protected-build:
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extends: [ ".aws-isc", ".protected-build" ]
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trigger:
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include:
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- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
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job: aws-isc-protected-generate
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strategy: depend
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needs:
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- artifacts: True
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job: aws-isc-protected-generate
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# Parallel Pipeline for aarch64 (reuses override image, but generates and builds on aarch64)
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.aws-isc-aarch64:
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variables:
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SPACK_CI_STACK_NAME: aws-isc-aarch64
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aws-isc-aarch64-pr-generate:
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extends: [ ".aws-isc-aarch64", ".pr-generate-aarch64", ".aws-isc-overrides" ]
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aws-isc-aarch64-protected-generate:
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extends: [ ".aws-isc-aarch64", ".protected-generate-aarch64", ".aws-isc-overrides" ]
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aws-isc-aarch64-pr-build:
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extends: [ ".aws-isc-aarch64", ".pr-build" ]
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trigger:
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include:
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- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
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job: aws-isc-aarch64-pr-generate
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strategy: depend
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needs:
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- artifacts: True
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job: aws-isc-aarch64-pr-generate
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aws-isc-aarch64-protected-build:
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extends: [ ".aws-isc-aarch64", ".protected-build" ]
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trigger:
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include:
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- artifact: jobs_scratch_dir/cloud-ci-pipeline.yml
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job: aws-isc-aarch64-protected-generate
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strategy: depend
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needs:
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- artifacts: True
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job: aws-isc-aarch64-protected-generate
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########################################
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# Spack Tutorial
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########################################
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@@ -0,0 +1,256 @@
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spack:
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view: false
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concretizer:
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reuse: false
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unify: false
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config:
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concretizer: clingo
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install_tree:
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root: /home/software/spack
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padded_length: 384
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projections:
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all: '{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'
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packages:
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all:
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providers:
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blas:
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- openblas
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mkl:
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- intel-oneapi-mkl
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mpi:
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- openmpi
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- mpich
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variants: +mpi
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binutils:
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variants: +ld +gold +headers +libiberty ~nls
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version:
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- 2.36.1
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doxygen:
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version:
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- 1.8.20
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elfutils:
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variants: +bzip2 ~nls +xz
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hdf5:
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variants: +fortran +hl +shared
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libfabric:
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variants: fabrics=efa,tcp,udp,sockets,verbs,shm,mrail,rxd,rxm
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libunwind:
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variants: +pic +xz
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mesa:
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variants: ~llvm
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mesa18:
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variants: ~llvm
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mpich:
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variants: ~wrapperrpath netmod=ofi device=ch4
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ncurses:
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variants: +termlib
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openblas:
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variants: threads=openmp
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openmpi:
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variants: fabrics=ofi +legacylaunchers
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openturns:
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version: [1.18]
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relion:
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variants: ~mklfft
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# texlive:
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# version: [20210325]
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trilinos:
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variants: +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext +ifpack +ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu +nox +piro +phalanx +rol +rythmos +sacado +stk +shards +shylu +stokhos +stratimikos +teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
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xz:
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variants: +pic
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definitions:
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- compiler_specs:
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- gcc@11.2
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# Licensing OK?
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# - intel-oneapi-compilers@2022.1
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# - nvhpc
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- cuda_specs:
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# Depends on ctffind which embeds fsincos (x86-specific asm) within code. Will not build on ARM
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#- relion +cuda cuda_arch=70
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- raja +cuda cuda_arch=70
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- mfem +cuda cuda_arch=70
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- app_specs:
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- bwa
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# Depends on simde which requires newer compiler?
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#- bowtie2
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# Requires x86_64 specific ASM
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#- cistem
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- cromwell
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- fastqc
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- flux-sched
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- flux-core
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- flux-pmix
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- gatk
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||||
- gromacs
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- lammps
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- wrf build_type=dm+sm
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- mfem
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- mpas-model ^parallelio+pnetcdf
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- nextflow
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- octave
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- openfoam
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- osu-micro-benchmarks
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- parallel
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- paraview
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- picard
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- quantum-espresso
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- raja
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# Depends on bowtie2 -> simde which requires newer compiler?
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#- rsem
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# Errors on texlive
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#- rstudio
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- salmon
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- samtools
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- seqtk
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- snakemake
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- star
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||||
# Requires gcc@9:
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#- ufs-weather-model
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# requires LLVM which fails without constraint
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#- visit
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- lib_specs:
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- openmpi fabrics=ofi
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- openmpi fabrics=ofi +legacylaunchers
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- openmpi fabrics=auto
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- mpich
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- libfabric
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- compiler:
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- '%gcc@7.3.1'
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- target:
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- 'target=aarch64'
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- 'target=graviton2'
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specs:
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- matrix:
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- - $cuda_specs
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- - $compiler
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- - $target
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- matrix:
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- - $app_specs
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- - $compiler
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- - $target
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- matrix:
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- - $lib_specs
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- - $compiler
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- - $target
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- matrix:
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- - $compiler_specs
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- - $compiler
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- - $target
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mirrors: { "mirror": "s3://spack-binaries/develop/aws-isc-aarch64" }
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gitlab-ci:
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script:
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- . "./share/spack/setup-env.sh"
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- spack --version
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- cd ${SPACK_CONCRETE_ENV_DIR}
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- spack env activate --without-view .
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- spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'"
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- mkdir -p ${SPACK_ARTIFACTS_ROOT}/user_data
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- if [[ -r /mnt/key/intermediate_ci_signing_key.gpg ]]; then spack gpg trust /mnt/key/intermediate_ci_signing_key.gpg; fi
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- if [[ -r /mnt/key/spack_public_key.gpg ]]; then spack gpg trust /mnt/key/spack_public_key.gpg; fi
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- spack -d ci rebuild > >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_out.txt) 2> >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_err.txt >&2)
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image: { "name": "ghcr.io/spack/e4s-amazonlinux-2:v2022-03-21", "entrypoint": [""] }
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mappings:
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- match:
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- llvm
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- llvm-amdgpu
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- paraview
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runner-attributes:
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tags: [ "spack", "huge", "aarch64" ]
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variables:
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CI_JOB_SIZE: huge
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KUBERNETES_CPU_REQUEST: 15000m
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KUBERNETES_MEMORY_REQUEST: 62G
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- match:
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- ascent
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- atk
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- axom
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- cistem
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- ctffind
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- cuda
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- dyninst
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- gcc
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- ginkgo
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||||
- hdf5
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||||
- hpx
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||||
- kokkos-kernels
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- kokkos-nvcc-wrapper
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- magma
|
||||
- mfem
|
||||
- mpich
|
||||
- openturns
|
||||
- parallelio
|
||||
- precice
|
||||
- raja
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||||
- relion
|
||||
- rocblas
|
||||
- rocsolver
|
||||
- rust
|
||||
- slate
|
||||
- strumpack
|
||||
- sundials
|
||||
- trilinos
|
||||
- umpire
|
||||
- vtk
|
||||
- vtk-h
|
||||
- vtk-m
|
||||
- warpx
|
||||
- wrf
|
||||
- wxwidgets
|
||||
runner-attributes:
|
||||
tags: [ "spack", "large", "aarch64" ]
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||||
variables:
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||||
CI_JOB_SIZE: large
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||||
KUBERNETES_CPU_REQUEST: 8000m
|
||||
KUBERNETES_MEMORY_REQUEST: 12G
|
||||
|
||||
- match: ['os=amzn2']
|
||||
runner-attributes:
|
||||
tags: ["spack", "aarch64"]
|
||||
variables:
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||||
CI_JOB_SIZE: "default"
|
||||
|
||||
broken-specs-url: "s3://spack-binaries/broken-specs"
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||||
|
||||
service-job-attributes:
|
||||
before_script:
|
||||
- . "./share/spack/setup-env.sh"
|
||||
- spack --version
|
||||
image: { "name": "ghcr.io/spack/e4s-amazonlinux-2:v2022-03-21", "entrypoint": [""] }
|
||||
tags: ["spack", "public", "aarch64"]
|
||||
|
||||
signing-job-attributes:
|
||||
image: { "name": "ghcr.io/spack/notary:latest", "entrypoint": [""] }
|
||||
tags: ["spack", "aws"]
|
||||
script:
|
||||
- aws s3 sync --exclude "*" --include "*spec.json*" ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache /tmp
|
||||
- /sign.sh
|
||||
- aws s3 sync --exclude "*" --include "*spec.json.sig*" /tmp ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache
|
||||
|
||||
cdash:
|
||||
build-group: AWS Packages
|
||||
url: https://cdash.spack.io
|
||||
project: Spack Testing
|
||||
site: Cloud Gitlab Infrastructure
|
||||
258
share/spack/gitlab/cloud_pipelines/stacks/aws-isc/spack.yaml
Normal file
258
share/spack/gitlab/cloud_pipelines/stacks/aws-isc/spack.yaml
Normal file
@@ -0,0 +1,258 @@
|
||||
spack:
|
||||
view: false
|
||||
|
||||
concretizer:
|
||||
reuse: false
|
||||
unify: false
|
||||
|
||||
config:
|
||||
concretizer: clingo
|
||||
install_tree:
|
||||
root: /home/software/spack
|
||||
padded_length: 384
|
||||
projections:
|
||||
all: '{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'
|
||||
|
||||
packages:
|
||||
all:
|
||||
providers:
|
||||
blas:
|
||||
- openblas
|
||||
mkl:
|
||||
- intel-oneapi-mkl
|
||||
mpi:
|
||||
- openmpi
|
||||
- mpich
|
||||
variants: +mpi
|
||||
binutils:
|
||||
variants: +ld +gold +headers +libiberty ~nls
|
||||
version:
|
||||
- 2.36.1
|
||||
doxygen:
|
||||
version:
|
||||
- 1.8.20
|
||||
elfutils:
|
||||
variants: +bzip2 ~nls +xz
|
||||
hdf5:
|
||||
variants: +fortran +hl +shared
|
||||
libfabric:
|
||||
variants: fabrics=efa,tcp,udp,sockets,verbs,shm,mrail,rxd,rxm
|
||||
libunwind:
|
||||
variants: +pic +xz
|
||||
mesa:
|
||||
variants: ~llvm
|
||||
mesa18:
|
||||
variants: ~llvm
|
||||
mpich:
|
||||
variants: ~wrapperrpath netmod=ofi device=ch4
|
||||
ncurses:
|
||||
variants: +termlib
|
||||
openblas:
|
||||
variants: threads=openmp
|
||||
openmpi:
|
||||
variants: fabrics=ofi +legacylaunchers
|
||||
openturns:
|
||||
version: [1.18]
|
||||
relion:
|
||||
variants: ~mklfft
|
||||
# texlive:
|
||||
# version: [20210325]
|
||||
trilinos:
|
||||
variants: +amesos +amesos2 +anasazi +aztec +belos +boost +epetra +epetraext +ifpack +ifpack2 +intrepid +intrepid2 +isorropia +kokkos +ml +minitensor +muelu +nox +piro +phalanx +rol +rythmos +sacado +stk +shards +shylu +stokhos +stratimikos +teko +tempus +tpetra +trilinoscouplings +zoltan +zoltan2 +superlu-dist gotype=long_long
|
||||
xz:
|
||||
variants: +pic
|
||||
|
||||
definitions:
|
||||
|
||||
- compiler_specs:
|
||||
- gcc@11.2
|
||||
# Licensing OK?
|
||||
# - intel-oneapi-compilers@2022.1
|
||||
# - nvhpc
|
||||
|
||||
- cuda_specs:
|
||||
# Disabled for consistency with aarch64
|
||||
#- relion +cuda cuda_arch=70
|
||||
- raja +cuda cuda_arch=70
|
||||
- mfem +cuda cuda_arch=70
|
||||
|
||||
- app_specs:
|
||||
- bwa
|
||||
# Disabled for consistency with aarch64
|
||||
#- bowtie2
|
||||
# Disabled for consistency with aarch64
|
||||
#- cistem
|
||||
- cromwell
|
||||
- fastqc
|
||||
- flux-sched
|
||||
- flux-core
|
||||
- flux-pmix
|
||||
- gatk
|
||||
- gromacs
|
||||
- lammps
|
||||
- wrf build_type=dm+sm
|
||||
- mfem
|
||||
- mpas-model ^parallelio+pnetcdf
|
||||
- nextflow
|
||||
- octave
|
||||
- openfoam
|
||||
- osu-micro-benchmarks
|
||||
- parallel
|
||||
- paraview
|
||||
- picard
|
||||
- quantum-espresso
|
||||
# Build broken for gcc@7.3.1 x86_64_v4 (error: '_mm512_loadu_epi32' was not declared in this scope)
|
||||
#- raja
|
||||
# Disabled for consistency with aarch64
|
||||
#- rsem
|
||||
# Errors on texlive
|
||||
#- rstudio
|
||||
- salmon
|
||||
- samtools
|
||||
- seqtk
|
||||
- snakemake
|
||||
- star
|
||||
# Requires gcc@9:
|
||||
#- ufs-weather-model
|
||||
# Disabled for consistency with aarch64
|
||||
#- visit
|
||||
|
||||
- lib_specs:
|
||||
- openmpi fabrics=ofi
|
||||
- openmpi fabrics=ofi +legacylaunchers
|
||||
- openmpi fabrics=auto
|
||||
- mpich
|
||||
- libfabric
|
||||
|
||||
- compiler:
|
||||
- '%gcc@7.3.1'
|
||||
|
||||
- target:
|
||||
- 'target=x86_64_v3'
|
||||
- 'target=x86_64_v4'
|
||||
|
||||
|
||||
specs:
|
||||
|
||||
- matrix:
|
||||
- - $cuda_specs
|
||||
- - $compiler
|
||||
- - $target
|
||||
|
||||
- matrix:
|
||||
- - $app_specs
|
||||
- - $compiler
|
||||
- - $target
|
||||
|
||||
- matrix:
|
||||
- - $lib_specs
|
||||
- - $compiler
|
||||
- - $target
|
||||
|
||||
- matrix:
|
||||
- - $compiler_specs
|
||||
- - $compiler
|
||||
- - $target
|
||||
|
||||
|
||||
mirrors: { "mirror": "s3://spack-binaries/develop/aws-isc" }
|
||||
|
||||
gitlab-ci:
|
||||
|
||||
script:
|
||||
- . "./share/spack/setup-env.sh"
|
||||
- spack --version
|
||||
- cd ${SPACK_CONCRETE_ENV_DIR}
|
||||
- spack env activate --without-view .
|
||||
- spack config add "config:install_tree:projections:${SPACK_JOB_SPEC_PKG_NAME}:'morepadding/{architecture}/{compiler.name}-{compiler.version}/{name}-{version}-{hash}'"
|
||||
- mkdir -p ${SPACK_ARTIFACTS_ROOT}/user_data
|
||||
- if [[ -r /mnt/key/intermediate_ci_signing_key.gpg ]]; then spack gpg trust /mnt/key/intermediate_ci_signing_key.gpg; fi
|
||||
- if [[ -r /mnt/key/spack_public_key.gpg ]]; then spack gpg trust /mnt/key/spack_public_key.gpg; fi
|
||||
- spack -d ci rebuild > >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_out.txt) 2> >(tee ${SPACK_ARTIFACTS_ROOT}/user_data/pipeline_err.txt >&2)
|
||||
|
||||
image: { "name": "ghcr.io/spack/e4s-amazonlinux-2:v2022-03-21", "entrypoint": [""] }
|
||||
mappings:
|
||||
- match:
|
||||
- llvm
|
||||
- llvm-amdgpu
|
||||
- pango
|
||||
- paraview
|
||||
runner-attributes:
|
||||
tags: [ "spack", "huge", "x86_64_v4" ]
|
||||
variables:
|
||||
CI_JOB_SIZE: huge
|
||||
KUBERNETES_CPU_REQUEST: 11000m
|
||||
KUBERNETES_MEMORY_REQUEST: 42G
|
||||
|
||||
|
||||
- match:
|
||||
- ascent
|
||||
- atk
|
||||
- axom
|
||||
- cistem
|
||||
- ctffind
|
||||
- cuda
|
||||
- dyninst
|
||||
- gcc
|
||||
- ginkgo
|
||||
- hdf5
|
||||
- hpx
|
||||
- kokkos-kernels
|
||||
- kokkos-nvcc-wrapper
|
||||
- magma
|
||||
- mfem
|
||||
- mpich
|
||||
- openturns
|
||||
- parallelio
|
||||
- precice
|
||||
- raja
|
||||
- relion
|
||||
- rocblas
|
||||
- rocsolver
|
||||
- rust
|
||||
- slate
|
||||
- strumpack
|
||||
- sundials
|
||||
- trilinos
|
||||
- umpire
|
||||
- vtk
|
||||
- vtk-h
|
||||
- vtk-m
|
||||
- warpx
|
||||
- wrf
|
||||
- wxwidgets
|
||||
runner-attributes:
|
||||
tags: [ "spack", "large", "x86_64_v4" ]
|
||||
variables:
|
||||
CI_JOB_SIZE: large
|
||||
KUBERNETES_CPU_REQUEST: 8000m
|
||||
KUBERNETES_MEMORY_REQUEST: 12G
|
||||
|
||||
- match: ['os=amzn2']
|
||||
runner-attributes:
|
||||
tags: ["spack", "x86_64_v4"]
|
||||
variables:
|
||||
CI_JOB_SIZE: "default"
|
||||
|
||||
broken-specs-url: "s3://spack-binaries/broken-specs"
|
||||
|
||||
service-job-attributes:
|
||||
before_script:
|
||||
- . "./share/spack/setup-env.sh"
|
||||
- spack --version
|
||||
image: { "name": "ghcr.io/spack/e4s-amazonlinux-2:v2022-03-21", "entrypoint": [""] }
|
||||
tags: ["spack", "public", "x86_64_v4"]
|
||||
|
||||
signing-job-attributes:
|
||||
image: { "name": "ghcr.io/spack/notary:latest", "entrypoint": [""] }
|
||||
tags: ["spack", "aws"]
|
||||
script:
|
||||
- aws s3 sync --exclude "*" --include "*spec.json*" ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache /tmp
|
||||
- /sign.sh
|
||||
- aws s3 sync --exclude "*" --include "*spec.json.sig*" /tmp ${SPACK_REMOTE_MIRROR_OVERRIDE}/build_cache
|
||||
|
||||
cdash:
|
||||
build-group: AWS Packages
|
||||
url: https://cdash.spack.io
|
||||
project: Spack Testing
|
||||
site: Cloud Gitlab Infrastructure
|
||||
@@ -18,6 +18,7 @@ class Simde(MesonPackage):
|
||||
url = "https://github.com/simd-everywhere/simde/archive/v0.6.0.tar.gz"
|
||||
git = "https://github.com/simd-everywhere/simde.git"
|
||||
|
||||
version('0.7.2', sha256='366d5e9a342c30f1e40d1234656fb49af5ee35590aaf53b3c79b2afb906ed4c8')
|
||||
version('0.6.0', sha256='25a8b8c69c17ddc2f6209e86caa6b12d4ed91c0f841617efc56e5675eea84915')
|
||||
|
||||
patch('sve-gcc.patch', when='@0.6.0 %gcc')
|
||||
|
||||
Reference in New Issue
Block a user