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Update py-gtdbtk to 2.3.2 (#39296)

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* fastani: adding version 1.34 and changing build_system

* py-gtdbtk: adding version 2.3.2

* fastani: adding requested changes

* py-gtdbtk: adding requested changes

* fastani: remove conditional
This commit is contained in:
snehring
2023-08-08 18:33:56 -05:00
committed by GitHub
parent 75c70c395d
commit 99112ad2ad
2 changed files with 12 additions and 7 deletions
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15
var/spack/repos/builtin/packages/fastani/package.py
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@@ -6,18 +6,23 @@
from spack.package import * from spack.package import *
class Fastani(AutotoolsPackage): class Fastani(CMakePackage, AutotoolsPackage):
"""Fast, alignment-free computation of whole-genome Average Nucleotide """Fast, alignment-free computation of whole-genome Average Nucleotide
Identity (ANI)""" Identity (ANI)"""
homepage = "https://github.com/ParBLiSS/FastANI" homepage = "https://github.com/ParBLiSS/FastANI"
url = "https://github.com/ParBLiSS/FastANI/archive/v1.33.tar.gz" url = "https://github.com/ParBLiSS/FastANI/archive/v1.33.tar.gz"
maintainers("snehring")
version("1.34", sha256="dc185cf29b9fa40cdcc2c83bb48150db46835e49b9b64a3dbff8bc4d0f631cb1")
version("1.33", sha256="0b18b3074094722fb1b2247c1a1c4eb96295fff369b837f422e05072740e0013") version("1.33", sha256="0b18b3074094722fb1b2247c1a1c4eb96295fff369b837f422e05072740e0013")
depends_on("autoconf", type="build") build_system(conditional("cmake", when="@1.34:"), "autotools", default="cmake")
depends_on("autoconf", type="build", when="build_system=autotools")
depends_on("automake", type="build", when="build_system=autotools")
depends_on("cmake@3.20:", type="build", when="build_system=cmake")
depends_on("libtool", type="build", when="build_system=autotools")
depends_on("m4", type="build", when="build_system=autotools")
depends_on("gsl", type=("build", "link")) depends_on("gsl", type=("build", "link"))
depends_on("zlib", type=("build", "link")) depends_on("zlib", type=("build", "link"))
depends_on("automake", type="build")
depends_on("libtool", type="build")
depends_on("m4", type="build")

4
var/spack/repos/builtin/packages/py-gtdbtk/package.py
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@@ -15,15 +15,15 @@ class PyGtdbtk(PythonPackage):
homepage = "https://github.com/Ecogenomics/GTDBTk" homepage = "https://github.com/Ecogenomics/GTDBTk"
pypi = "gtdbtk/gtdbtk-2.1.0.tar.gz" pypi = "gtdbtk/gtdbtk-2.1.0.tar.gz"
version("2.3.2", sha256="80efd31e10007d835f56a3d6fdf039a59db3b6ba4be26b234692da5e688aa99f")
version("2.3.0", sha256="4f237a03657be4540ac653c276fe31c002b6923af0411316719a9541d6e97d4b") version("2.3.0", sha256="4f237a03657be4540ac653c276fe31c002b6923af0411316719a9541d6e97d4b")
version("2.1.0", sha256="980885141f13502afdf05e720871427e3de4fe27f4f3f97e74af6fed87eb50a7") version("2.1.0", sha256="980885141f13502afdf05e720871427e3de4fe27f4f3f97e74af6fed87eb50a7")
depends_on("python@3.6:", type=("build", "run"))
depends_on("py-setuptools", type=("build")) depends_on("py-setuptools", type=("build"))
depends_on("py-dendropy@4.1.0:", type=("build", "run")) depends_on("py-dendropy@4.1.0:", type=("build", "run"))
depends_on("py-numpy@1.9.0:", type=("build", "run")) depends_on("py-numpy@1.9.0:", type=("build", "run"))
depends_on("py-tqdm@4.35.0:", type=("build", "run")) depends_on("py-tqdm@4.35.0:", type=("build", "run"))
depends_on("py-pydantic", type=("build", "run"), when="@2.3.0:") depends_on("py-pydantic@1.9.2:1", type=("build", "run"), when="@2.3.0:")
depends_on("prodigal@2.6.2:", type=("build", "run")) depends_on("prodigal@2.6.2:", type=("build", "run"))
depends_on("hmmer@3.1b2:", type=("build", "run")) depends_on("hmmer@3.1b2:", type=("build", "run"))
depends_on("pplacer@1.1:", type=("build", "run")) depends_on("pplacer@1.1:", type=("build", "run"))