Mfem 3.2 (#1202)
* mfem: add tarball extension Add tarball extension as a result of a feature added in PR#1926, which fixes earlier issues in this PR (PR#1202). Prior to adding this feature, Spack would not autodetect the extension of the tarball downloaded from the redirected, shorted Google URL, requiring a messy hack. This hack worked for mfem version 3.1, but led to errors when adding mfem version 3.2 because the files downloaded from Google did not contain the package name, version number, or extension. Adding the extension enables Spack to rename the tarball downloaded from Google to a sensible name that is compatible with its filename parsing algorithms so that Spack "does the right thing" (detects that the file is a GZipped tarball, decompresses it, runs GNU Make) in fetching and staging the package. * mfem: add linkage to KLU & BTF Add linkage to the KLU & BTF solvers, which are now enabled in MFEM for versions 3.2 and later. * mfem: Add superlu-dist variant Add linkage to SuperLU_DIST, which is a new linear solver interface for MFEM versions 3.2 and later. * mfem: add netcdf variant for cubit mesh support Add NetCDF variant for MFEM versions 3.2 and later; installing the NetCDF interfaces enables CUBIT mesh support.
This commit is contained in:
Geoffrey Oxberry
Todd Gamblin
parent
29fc9cd22c
commit
9a05ffea27
@ -23,8 +23,6 @@
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import glob
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import string
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class Mfem(Package):
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@ -35,11 +33,11 @@ class Mfem(Package):
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version('3.2',
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'2938c3deed4ec4f7fd5b5f5cfe656845282e86e2dcd477d292390058b7b94340',
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url='http://goo.gl/Y9T75B', expand=False, preferred=True)
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url='http://goo.gl/Y9T75B', preferred=True, extension='.tar.gz')
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version('3.1',
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'841ea5cf58de6fae4de0f553b0e01ebaab9cd9c67fa821e8a715666ecf18fc57',
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url='http://goo.gl/xrScXn', expand=False)
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url='http://goo.gl/xrScXn', extension='.tar.gz')
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# version('3.1', git='https://github.com/mfem/mfem.git',
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# commit='dbae60fe32e071989b52efaaf59d7d0eb2a3b574')
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@ -48,8 +46,11 @@ class Mfem(Package):
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variant('suite-sparse', default=False,
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description='Activate support for SuiteSparse')
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variant('mpi', default=False, description='Activate support for MPI')
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variant('superlu-dist', default=False,
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description='Activate support for SuperLU_Dist')
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variant('lapack', default=False, description='Activate support for LAPACK')
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variant('debug', default=False, description='Build debug version')
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variant('netcdf', default=False, description='Activate NetCDF support')
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depends_on('blas', when='+lapack')
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depends_on('lapack', when='+lapack')
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@ -68,6 +69,12 @@ class Mfem(Package):
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depends_on('metis@5:', when='+suite-sparse ^suite-sparse@4.5:')
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depends_on('cmake', when='^metis@5:', type='build')
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depends_on('superlu-dist', when='@3.2: +superlu-dist')
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depends_on('netcdf', when='@3.2: +netcdf')
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depends_on('zlib', when='@3.2: +netcdf')
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depends_on('hdf5', when='@3.2: +netcdf')
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def check_variants(self, spec):
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if '+mpi' in spec and ('+hypre' not in spec or '+metis' not in spec):
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raise InstallError('mfem+mpi must be built with +hypre ' +
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@ -81,6 +88,12 @@ def check_variants(self, spec):
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raise InstallError('To work around CMake bug with clang, must ' +
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'build mfem with mfem[+variants] %clang ' +
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'^cmake %gcc to force CMake to build with gcc')
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if '@:3.1' in spec and '+superlu-dist' in spec:
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raise InstallError('MFEM does not support SuperLU_DIST for ' +
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'versions 3.1 and earlier')
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if '@:3.1' in spec and '+netcdf' in spec:
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raise InstallError('MFEM does not support NetCDF for versions' +
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'3.1 and earlier')
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return
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def install(self, spec, prefix):
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@ -102,7 +115,14 @@ def install(self, spec, prefix):
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'HYPRE_LIB=-L%s' % spec['hypre'].prefix.lib +
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' -lHYPRE'])
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if '+metis' in spec:
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if 'parmetis' in spec:
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metis_lib = '-L%s -lparmetis -lmetis' % spec['parmetis'].prefix.lib
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metis_str = 'MFEM_USE_METIS_5=YES'
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options.extend([metis_str,
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'METIS_DIR=%s' % spec['parmetis'].prefix,
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'METIS_OPT=-I%s' % spec['parmetis'].prefix.include,
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'METIS_LIB=%s' % metis_lib])
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elif 'metis' in spec:
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metis_lib = '-L%s -lmetis' % spec['metis'].prefix.lib
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if spec['metis'].satisfies('@5:'):
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metis_str = 'MFEM_USE_METIS_5=YES'
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@ -114,14 +134,27 @@ def install(self, spec, prefix):
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'METIS_OPT=-I%s' % spec['metis'].prefix.include,
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'METIS_LIB=%s' % metis_lib])
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if '+mpi' in spec:
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if 'mpi' in spec:
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options.extend(['MFEM_USE_MPI=YES'])
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if '+superlu-dist' in spec:
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superlu_lib = '-L%s' % spec['superlu-dist'].prefix.lib
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superlu_lib += ' -lsuperlu_dist'
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sl_inc = 'SUPERLU_OPT=-I%s' % spec['superlu-dist'].prefix.include
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options.extend(['MFEM_USE_SUPERLU=YES',
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'SUPERLU_DIR=%s' % spec['superlu-dist'].prefix,
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sl_inc,
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'SUPERLU_LIB=%s' % superlu_lib])
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if '+suite-sparse' in spec:
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ssp = spec['suite-sparse'].prefix
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ss_lib = '-L%s' % ssp.lib
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ss_lib += (' -lumfpack -lcholmod -lcolamd -lamd -lcamd' +
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' -lccolamd -lsuitesparseconfig')
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if '@3.2:' in spec:
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ss_lib += ' -lklu -lbtf'
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ss_lib += (' -lumfpack -lcholmod -lcolamd' +
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' -lamd -lcamd -lccolamd -lsuitesparseconfig')
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no_librt_archs = ['darwin-i686', 'darwin-x86_64']
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no_rt = any(map(lambda a: spec.satisfies('=' + a),
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@ -135,16 +168,23 @@ def install(self, spec, prefix):
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'SUITESPARSE_OPT=-I%s' % ssp.include,
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'SUITESPARSE_LIB=%s' % ss_lib])
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if '+netcdf' in spec:
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np = spec['netcdf'].prefix
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zp = spec['zlib'].prefix
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h5p = spec['hdf5'].prefix
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nlib = '-L%s -lnetcdf ' % np.lib
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nlib += '-L%s -lhdf5_hl -lhdf5 ' % h5p.lib
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nlib += '-L%s -lz' % zp.lib
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options.extend(['MFEM_USE_NETCDF=YES',
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'NETCDF_DIR=%s' % np,
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'HDF5_DIR=%s' % h5p,
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'ZLIB_DIR=%s' % zp,
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'NETCDF_OPT=-I%s' % np.include,
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'NETCDF_LIB=%s' % nlib])
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if '+debug' in spec:
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options.extend(['MFEM_DEBUG=YES'])
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# Dirty hack to cope with URL redirect
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tgz_file = string.split(self.url, '/')[-1]
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tar = which('tar')
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tar('xzvf', tgz_file)
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cd(glob.glob('mfem*')[0])
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# End dirty hack to cope with URL redirect
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make('config', *options)
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make('all')
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