r-rsamtools: add -lz to Makevars (#38649)

2024-11-27 15:44:48 -05:00 · 2024-11-27 15:44:48 -05:00 · 9d33c89030
commit 9d33c89030
parent 51ab7bad3b
1 changed files with 5 additions and 0 deletions
--- a/var/spack/repos/builtin/packages/r-rsamtools/package.py
+++ b/var/spack/repos/builtin/packages/r-rsamtools/package.py
@ -58,3 +58,8 @@ class RRsamtools(RPackage):

    # this is not a listed dependency but is needed
    depends_on("curl")
+    depends_on("zlib-api")
+
+    def patch(self):
+        with working_dir("src"):
+            filter_file(r"(^PKG_LIBS=)(\$\(RHTSLIB_LIBS\))", "\\1\\2 -lz", "Makevars")