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support OpenFOAM package(s) (#3528)

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* ENH: add package for building OpenFOAM (1612) from www.openfoam.com
- provide 'openfoam' as virtual package.
- package as openfoam-com to reflect the distribution point.

This initial spack packaging for OpenFOAM supports a number of possible
variants and should handle 64-bit labels properly now that the scotch
package has been updated accordingly.

* ENH: update package for foam-extend (extend-project.de)

- provide 'openfoam' as virtual package.

- much of the build is now aligned with how the openfoam-com package
  looks, with the aim of future refactoring.

- avoid installing intermediate targets.

- contains its own environment sourcing script for the build, for more
  flexibility and robustness (doesn't touch the python build environ)

* ENH: added package for building from openfoam.org

- provide 'openfoam' as a virtual package.

- this is largely a direct copy of the openfoam-com package.
  It has been supplied as a courtesy for users and to ensure maximum
  consistency in quality and naming between the foam-extend,
  openfoam-com and openfoam-org packages.

* CONFIG: add openfoam into bash completion providers list

* ENH: have openfoam-com use spack as USERMPI

- also simplify the generation of mplib/compiler rules

* ENH: have openfoam-org use spack as SYSTEMMPI

- this setup requires more environment settings than USERMPI
  (openfoam-com), but is currently the only means of integration
  for openfoam-org

- simplify generation of mplib/compiler rules

* ENH: simplify generation of mplib/compiler rules (foam-extend)

- rename mpi rules from SPACK,SPACKMPI to USER,USERMPI for consistency
  with openfoam-com and to generalize for any build system.

* STYLE: record spack tree as a log file (openfoam)

- can be useful for future diagnostics and general record keeping
This commit is contained in:
Mark Olesen 2017-03-31 01:35:57 +02:00 committed by Todd Gamblin
parent 2bd216a6a1
commit 9e1abb13dc
13 changed files with 2485 additions and 211 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
share/spack/spack-completion.bash
View File

@ -590,7 +590,7 @@ function _spack_providers {
compgen -W "-h --help" -- "$cur" compgen -W "-h --help" -- "$cur"
else else
compgen -W "blas daal elf golang ipp lapack mkl compgen -W "blas daal elf golang ipp lapack mkl
mpe mpi pil scalapack" -- "$cur" mpe mpi openfoam pil scalapack" -- "$cur"
fi fi
} }

630
var/spack/repos/builtin/packages/foam-extend/package.py
View File

@ -9,6 +9,8 @@
# For details, see https://github.com/llnl/spack # For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL. # Please also see the LICENSE file for our notice and the LGPL.
# #
# License
# -------
# This program is free software; you can redistribute it and/or modify # This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as # it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999. # published by the Free Software Foundation) version 2.1, February 1999.
@ -21,17 +23,51 @@
# You should have received a copy of the GNU Lesser General Public # You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software # License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# Legal Notice
# ------------
# OPENFOAM is a trademark owned by OpenCFD Ltd
# (producer and distributor of the OpenFOAM software via www.openfoam.com).
# The trademark information must remain visible and unadulterated in this
# file and via the "spack info" and comply with the term set by
# http://openfoam.com/legal/trademark-policy.php
#
# This file is not part of OpenFOAM, nor does it constitute a component of an
# OpenFOAM distribution.
#
##############################################################################
#
# Notes
# - mpi handling: WM_MPLIB=USER and provide wmake rules for special purpose
# 'USER and 'USERMPI' mpi implementations.
# The choice of 'USER' vs 'USERMPI' may change in the future.
#
# Changes
# 2017-03-28 Mark Olesen <mark.olesen@esi-group.com>
# - avoid installing intermediate targets.
# - reworked to mirror the openfoam-com package.
# If changes are needed here, consider if they need applying there too.
#
############################################################################## ##############################################################################
from spack import * from spack import *
from spack.environment import * from spack.environment import *
import multiprocessing import multiprocessing
import glob
import re
import shutil
import os import os
from os.path import isdir, isfile
from spack.pkg.builtin.openfoam_com import *
class FoamExtend(Package): class FoamExtend(Package):
"""The foam-extend project is a fork of the OpenFOAM open source library """The Extend Project is a fork of the OpenFOAM opensource library
for Computational Fluid Dynamics (CFD).""" for Computational Fluid Dynamics (CFD).
This offering is not approved or endorsed by OpenCFD Ltd,
producer and distributor of the OpenFOAM software via www.openfoam.com,
and owner of the OPENFOAM trademark.
"""
homepage = "http://www.extend-project.de/" homepage = "http://www.extend-project.de/"
@ -40,32 +76,35 @@ class FoamExtend(Package):
version('3.1', git='http://git.code.sf.net/p/foam-extend/foam-extend-3.1') version('3.1', git='http://git.code.sf.net/p/foam-extend/foam-extend-3.1')
version('3.0', git='http://git.code.sf.net/p/foam-extend/foam-extend-3.0') version('3.0', git='http://git.code.sf.net/p/foam-extend/foam-extend-3.0')
variant('paraview', default=False, description='Enable ParaFOAM') # variant('int64', default=False,
variant( # description='Compile with 64-bit labels')
'scotch', default=True, variant('float32', default=False,
description='Activate Scotch as a possible decomposition library') description='Compile with 32-bit scalar (single-precision)')
variant(
'ptscotch', default=True,
description='Activate PT-Scotch as a possible decomposition library')
variant(
'metis', default=True,
description='Activate Metis as a possible decomposition library')
variant(
'parmetis', default=True,
description='Activate Parmetis as a possible decomposition library')
variant(
'parmgridgen', default=True,
description='Activate Parmgridgen support')
variant(
'source', default=True,
description='Installs also the source folder')
supported_compilers = {'clang': 'Clang', 'gcc': 'Gcc', 'intel': 'Icc'} variant('paraview', default=False,
description='Build paraview plugins (eg, paraFoam)')
variant('scotch', default=True,
description='With scotch for decomposition')
variant('ptscotch', default=True,
description='With ptscotch for decomposition')
variant('metis', default=True,
description='With metis for decomposition')
variant('parmetis', default=True,
description='With parmetis for decomposition')
variant('parmgridgen', default=True,
description='With parmgridgen support')
variant('source', default=True,
description='Install library/application sources and tutorials')
#: Map spack compiler names to OpenFOAM compiler names
# By default, simply capitalize the first letter
compiler_mapping = {'intel': 'icc'}
provides('openfoam')
depends_on('mpi') depends_on('mpi')
depends_on('python') depends_on('python')
depends_on('flex')
depends_on('zlib') depends_on('zlib')
depends_on('flex@:2.6.1') # <- restriction due to scotch
depends_on('cmake', type='build') depends_on('cmake', type='build')
depends_on('scotch~metis', when='~ptscotch+scotch') depends_on('scotch~metis', when='~ptscotch+scotch')
@ -73,174 +112,199 @@ class FoamExtend(Package):
depends_on('metis@5:', when='+metis') depends_on('metis@5:', when='+metis')
depends_on('parmetis', when='+parmetis') depends_on('parmetis', when='+parmetis')
depends_on('parmgridgen', when='+parmgridgen') depends_on('parmgridgen', when='+parmgridgen')
depends_on('paraview@:5.0.1', when='+paraview')
depends_on('paraview', when='+paraview') # Some user settings, to be adjusted manually or via variants
foam_cfg = {
'WM_COMPILER': 'Gcc', # <- %compiler
'WM_ARCH_OPTION': '64', # (32/64-bit on x86_64)
# FUTURE? 'WM_LABEL_SIZE': '32', # <- +int64
'WM_PRECISION_OPTION': 'DP', # <- +float32
'WM_COMPILE_OPTION': 'SPACKOpt', # Do not change
'WM_MPLIB': 'USER', # USER | USERMPI
}
def set_arch(self): # The system description is frequently needed
(sysname, nodename, release, version, machine) = os.uname() foam_sys = {
'WM_ARCH': None,
'WM_COMPILER': None,
'WM_OPTIONS': None,
}
if self.compiler.name not in self.supported_compilers: # Content for etc/prefs.{csh,sh}
raise RuntimeError('{0} is not a supported compiler \ etc_prefs = {}
to compile OpenFOAM'.format(self.compiler.name))
foam_compiler = self.supported_compilers[self.compiler.name] # Content for etc/config.{csh,sh}/ files
if sysname == 'Linux': etc_config = {}
arch = 'linux'
if foam_compiler == 'Clang':
raise RuntimeError('OS, compiler combination not\
supported ({0} {1})'.format(sysname, foam_compiler))
elif sysname == 'Darwin':
if machine == 'x86_64':
arch = 'darwinIntel'
if foam_compiler == 'Icc':
raise RuntimeError('OS, compiler combination not\
supported ({0} {1})'.format(sysname, foam_compiler))
else:
raise RuntimeError('{0} {1} is not a \
supported architecture'.format(sysname, machine))
return (arch, foam_compiler) build_script = './spack-Allwmake' # <- Generated by patch() method.
# phases = ['configure', 'build', 'install']
# build_system_class = 'OpenfoamCom'
def get_openfoam_environment(self): def setup_environment(self, spack_env, run_env):
return EnvironmentModifications.from_sourcing_files( run_env.set('FOAM_INST_DIR', self.prefix)
join_path(self.stage.source_path, run_env.set('WM_PROJECT_DIR', self.projectdir)
'etc/bashrc'))
@property
def _canonical(self):
"""Canonical name for this package and version"""
return 'foam-extend-{0}'.format(self.version.up_to(2))
@property
def projectdir(self):
"""Absolute location of project directory: WM_PROJECT_DIR/"""
return join_path(self.prefix, self._canonical) # <- prefix/canonical
@property
def etc(self):
"""Absolute location of the OpenFOAM etc/ directory"""
return join_path(self.projectdir, 'etc')
@property
def archbin(self):
"""Relative location of architecture-specific executables"""
wm_options = self.set_openfoam()
return join_path('applications', 'bin', wm_options)
@property
def archlib(self):
"""Relative location of architecture-specific libraries"""
wm_options = self.set_openfoam()
return join_path('lib', wm_options)
@property
def wm_options(self):
"""The architecture+compiler+options for OpenFOAM"""
opts = self.set_openfoam()
return opts
@property
def rpath_info(self):
"""Define 'SPACKOpt' compiler optimization file to have wmake
use spack information with minimum modifications to OpenFOAM
"""
build_libpath = join_path(self.stage.source_path, self.archlib)
install_libpath = join_path(self.projectdir, self.archlib)
# 'DBUG': rpaths
return '{0}{1} {2}{3}'.format(
self.compiler.cxx_rpath_arg, install_libpath,
self.compiler.cxx_rpath_arg, build_libpath)
def openfoam_arch(self):
"""Return an architecture value similar to what OpenFOAM does in
etc/config.sh/settings, but slightly more generous.
Uses and may adjust foam_cfg[WM_ARCH_OPTION] as a side-effect
"""
# spec.architecture.platform is like `uname -s`, but lower-case
platform = self.spec.architecture.platform
# spec.architecture.target is like `uname -m`
target = self.spec.architecture.target
if platform == 'linux':
if target == 'i686':
self.foam_cfg['WM_ARCH_OPTION'] = '32' # Force consistency
elif target == 'x86_64':
if self.foam_cfg['WM_ARCH_OPTION'] == '64':
platform += '64'
elif target == 'ia64':
platform += 'ia64'
elif target == 'armv7l':
platform += 'ARM7'
elif target == ppc64:
platform += 'PPC64'
elif target == ppc64le:
platform += 'PPC64le'
elif platform == 'darwin':
if target == 'x86_64':
platform += 'Intel'
if self.foam_cfg['WM_ARCH_OPTION'] == '64':
platform += '64'
# ... and others?
return platform
def openfoam_compiler(self):
"""Capitalized version of the compiler name, which usually corresponds
to how OpenFOAM will camel-case things.
Use compiler_mapping to handing special cases.
Also handle special compiler options (eg, KNL)
"""
comp = self.compiler.name
if comp in self.compiler_mapping:
comp = self.compiler_mapping[comp]
comp = comp.capitalize()
if '+knl' in self.spec:
comp += 'KNL'
return comp
# For foam-extend: does not yet support +int64
def set_openfoam(self):
"""Populate foam_cfg, foam_sys according to
variants, architecture, compiler.
Returns WM_OPTIONS.
"""
# Run once
opts = self.foam_sys['WM_OPTIONS']
if opts:
return opts
wm_arch = self.openfoam_arch()
wm_compiler = self.openfoam_compiler()
compileOpt = self.foam_cfg['WM_COMPILE_OPTION']
# Insist on a wmake rule for this architecture/compiler combination
archCompiler = wm_arch + wm_compiler
compiler_rule = join_path(
self.stage.source_path, 'wmake', 'rules', archCompiler)
if not isdir(compiler_rule):
raise RuntimeError(
'No wmake rule for {0}'.format(archCompiler))
if not re.match(r'.+Opt$', compileOpt):
raise RuntimeError(
"WM_COMPILE_OPTION={0} is not type '*Opt'".format(compileOpt))
# Adjust for variants
# FUTURE? self.foam_cfg['WM_LABEL_SIZE'] = (
# FUTURE? '64' if '+int64' in self.spec else '32'
# FUTURE? )
self.foam_cfg['WM_PRECISION_OPTION'] = (
'SP' if '+float32' in self.spec else 'DP'
)
# ----
# WM_OPTIONS=$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_COMPILE_OPTION
# ----
self.foam_sys['WM_ARCH'] = wm_arch
self.foam_sys['WM_COMPILER'] = wm_compiler
self.foam_cfg['WM_COMPILER'] = wm_compiler # For bashrc,cshrc too
self.foam_sys['WM_OPTIONS'] = ''.join([
wm_arch,
wm_compiler,
self.foam_cfg['WM_PRECISION_OPTION'],
# FUTURE? 'Int', self.foam_cfg['WM_LABEL_SIZE'], # Int32/Int64
compileOpt
])
return self.foam_sys['WM_OPTIONS']
def patch(self): def patch(self):
# change names to match the package and not the one patch in """Adjust OpenFOAM build for spack. Where needed, apply filter as an
# the Third-Party of foam-extend alternative to normal patching.
if '+parmgridgen' in self.spec: """
filter_file(r'-lMGridGen', self.set_openfoam() # May need foam_cfg/foam_sys information
r'-lmgrid',
'src/dbns/Make/options')
filter_file( # Adjust ParMGridGen - this is still a mess
r'-lMGridGen', files = [
r'-lmgrid', 'src/dbns/Make/options',
'src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options') # noqa: E501 'src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options' # noqa: E501
# Get the wmake arch and compiler
(arch, foam_compiler) = self.set_arch()
prefs_dict = {
'compilerInstall': 'System',
'WM_COMPILER': foam_compiler,
'WM_ARCH_OPTION': '64',
'WM_PRECISION_OPTION': 'DP',
'WM_COMPILE_OPTION': 'SPACKOpt',
'WM_MPLIB': 'SPACK',
'CMAKE_DIR': self.spec['cmake'].prefix,
'CMAKE_BIN_DIR': self.spec['cmake'].prefix.bin,
'PYTHON_DIR': self.spec['python'].prefix,
'PYTHON_BIN_DIR': self.spec['python'].prefix.bin,
'FLEX_SYSTEM': 1,
'FLEX_DIR': self.spec['flex'].prefix,
'BISON_SYSTEM': 1,
'BISON_DIR': self.spec['flex'].prefix,
'ZLIB_SYSTEM': 1,
'ZLIB_DIR': self.spec['zlib'].prefix,
}
if '+scotch' in self.spec or '+ptscotch' in self.spec:
prefs_dict['SCOTCH_SYSTEM'] = 1
prefs_dict['SCOTCH_DIR'] = self.spec['scotch'].prefix
prefs_dict['SCOTCH_BIN_DIR'] = self.spec['scotch'].prefix.bin
prefs_dict['SCOTCH_LIB_DIR'] = self.spec['scotch'].prefix.lib
prefs_dict['SCOTCH_INCLUDE_DIR'] = \
self.spec['scotch'].prefix.include
if '+metis' in self.spec:
prefs_dict['METIS_SYSTEM'] = 1
prefs_dict['METIS_DIR'] = self.spec['metis'].prefix
prefs_dict['METIS_BIN_DIR'] = self.spec['metis'].prefix.bin
prefs_dict['METIS_LIB_DIR'] = self.spec['metis'].prefix.lib
prefs_dict['METIS_INCLUDE_DIR'] = self.spec['metis'].prefix.include
if '+parmetis' in self.spec:
prefs_dict['PARMETIS_SYSTEM'] = 1
prefs_dict['PARMETIS_DIR'] = self.spec['parmetis'].prefix
prefs_dict['PARMETIS_BIN_DIR'] = self.spec['parmetis'].prefix.bin
prefs_dict['PARMETIS_LIB_DIR'] = self.spec['parmetis'].prefix.lib
prefs_dict['PARMETIS_INCLUDE_DIR'] = \
self.spec['parmetis'].prefix.include
if '+parmgridgen' in self.spec:
prefs_dict['PARMGRIDGEN_SYSTEM'] = 1
prefs_dict['PARMGRIDGEN_DIR'] = self.spec['parmgridgen'].prefix
prefs_dict['PARMGRIDGEN_BIN_DIR'] = \
self.spec['parmgridgen'].prefix.bin
prefs_dict['PARMGRIDGEN_LIB_DIR'] = \
self.spec['parmgridgen'].prefix.lib
prefs_dict['PARMGRIDGEN_INCLUDE_DIR'] = \
self.spec['parmgridgen'].prefix.include
if '+paraview' in self.spec:
prefs_dict['PARAVIEW_SYSTEM'] = 1
prefs_dict['PARAVIEW_DIR'] = self.spec['paraview'].prefix
prefs_dict['PARAVIEW_BIN_DIR'] = self.spec['paraview'].prefix.bin
prefs_dict['QT_SYSTEM'] = 1
prefs_dict['QT_DIR'] = self.spec['qt'].prefix
prefs_dict['QT_BIN_DIR'] = self.spec['qt'].prefix.bin
# write the prefs files to define the configuration needed,
# only the prefs.sh is used by this script but both are
# installed for end users
with working_dir('.'):
with open("etc/prefs.sh", "w") as fh:
for key in sorted(prefs_dict):
fh.write('export {0}={1}\n'.format(key, prefs_dict[key]))
with open("etc/prefs.csh", "w") as fh:
for key in sorted(prefs_dict):
fh.write('setenv {0}={1}\n'.format(key, prefs_dict[key]))
# Defining a different mpi and optimisation file to be able to
# make wmake get spack info with minimum modifications on
# configurations scripts
mpi_info = [
'PFLAGS = -DOMPI_SKIP_MPICXX -DMPICH_IGNORE_CXX_SEEK',
'PINC = -I{0}'.format(self.spec['mpi'].prefix.include),
'PLIBS = -L{0} -lmpi'.format(self.spec['mpi'].prefix.lib)
] ]
for f in files:
filter_file(r'-lMGridGen', r'-lmgrid', f, backup=False)
arch_path = ''.join([arch, prefs_dict['WM_ARCH_OPTION'], # Adjust for flex version check
foam_compiler]) files = [
option_path = ''.join([arch_path,
prefs_dict['WM_PRECISION_OPTION'],
prefs_dict['WM_COMPILE_OPTION']])
rule_path = join_path("wmake", "rules", arch_path)
build_path = join_path(self.stage.source_path, 'lib', option_path)
install_path = \
join_path(self.prefix,
'foam-extend-{0}'.format(self.version.up_to(2)),
option_path)
rpaths_foam = ' '.join([
'{0}{1}'.format(self.compiler.cxx_rpath_arg,
install_path),
'{0}{1}'.format(self.compiler.cxx_rpath_arg,
build_path)
])
compiler_flags = {
'DBUG': rpaths_foam,
'OPT': '-O3',
}
with working_dir(rule_path):
with open('mplibSPACK', "w") as fh:
fh.write('\n'.join(mpi_info))
for comp in ['c', 'c++']:
with open('{0}SPACKOpt'.format(comp), "w") as fh:
for key, val in compiler_flags.iteritems():
fh.write('{0}{1} = {2}\n'.format(comp, key, val))
_files_to_patch = [
'src/thermophysicalModels/reactionThermo/chemistryReaders/chemkinReader/chemkinLexer.L', # noqa: E501 'src/thermophysicalModels/reactionThermo/chemistryReaders/chemkinReader/chemkinLexer.L', # noqa: E501
'src/surfMesh/surfaceFormats/stl/STLsurfaceFormatASCII.L', # noqa: E501 'src/surfMesh/surfaceFormats/stl/STLsurfaceFormatASCII.L', # noqa: E501
'src/meshTools/triSurface/triSurface/interfaces/STL/readSTLASCII.L', # noqa: E501 'src/meshTools/triSurface/triSurface/interfaces/STL/readSTLASCII.L', # noqa: E501
@ -251,40 +315,198 @@ def patch(self):
'applications/utilities/mesh/conversion/fluentMeshToFoam/fluentMeshToFoam.L', # noqa: E501 'applications/utilities/mesh/conversion/fluentMeshToFoam/fluentMeshToFoam.L', # noqa: E501
'applications/utilities/mesh/conversion/fluent3DMeshToElmer/fluent3DMeshToElmer.L' # noqa: E501 'applications/utilities/mesh/conversion/fluent3DMeshToElmer/fluent3DMeshToElmer.L' # noqa: E501
] ]
for _file in _files_to_patch: for f in files:
filter_file(r'#if YY_FLEX_SUBMINOR_VERSION < 34', filter_file(
r'#if YY_FLEX_SUBMINOR_VERSION < 34',
r'#if YY_FLEX_MAJOR_VERSION <= 2 && YY_FLEX_MINOR_VERSION <= 5 && YY_FLEX_SUBMINOR_VERSION < 34', # noqa: E501 r'#if YY_FLEX_MAJOR_VERSION <= 2 && YY_FLEX_MINOR_VERSION <= 5 && YY_FLEX_SUBMINOR_VERSION < 34', # noqa: E501
_file) f, backup=False
)
def setup_environment(self, spack_env, run_env): # Build wrapper script
with working_dir(self.stage.path): with open(self.build_script, 'w') as out:
spack_env.set('FOAM_INST_DIR', os.path.abspath('.')) out.write(
"""#!/bin/bash
export FOAM_INST_DIR=$(cd .. && pwd -L)
. $PWD/etc/bashrc '' # No arguments
mkdir -p $FOAM_APPBIN $FOAM_LIBBIN 2>/dev/null # Allow interrupt
echo Build openfoam with SPACK
echo WM_PROJECT_DIR = $WM_PROJECT_DIR
./Allwmake # No arguments
#
""")
set_executable(self.build_script)
self.configure(self.spec, self.prefix) # Should be a separate phase
(arch, foam_compiler) = self.set_arch() def configure(self, spec, prefix):
"""Make adjustments to the OpenFOAM configuration files in their various
locations: etc/bashrc, etc/config.sh/FEATURE and customizations that
don't properly fit get placed in the etc/prefs.sh file (similiarly for
csh).
"""
self.set_openfoam() # Need foam_cfg/foam_sys information
run_env.set('FOAM_INST_DIR', self.prefix) # Content for etc/prefs.{csh,sh}
self.etc_prefs = {
'000': { # Sort first
'compilerInstall': 'System',
},
'001': {},
'cmake': {
'CMAKE_DIR': spec['cmake'].prefix,
'CMAKE_BIN_DIR': spec['cmake'].prefix.bin,
},
'python': {
'PYTHON_DIR': spec['python'].prefix,
'PYTHON_BIN_DIR': spec['python'].prefix.bin,
},
'flex': {
'FLEX_SYSTEM': 1,
'FLEX_DIR': spec['flex'].prefix,
},
'bison': {
'BISON_SYSTEM': 1,
'BISON_DIR': spec['flex'].prefix,
},
'zlib': {
'ZLIB_SYSTEM': 1,
'ZLIB_DIR': spec['zlib'].prefix,
},
}
# Adjust configuration via prefs - sort second
self.etc_prefs['001'].update(self.foam_cfg)
def install(self, spec, prefix): if '+scotch' in spec or '+ptscotch' in spec:
env_openfoam = self.get_openfoam_environment() pkg = spec['scotch'].prefix
env_openfoam.apply_modifications() self.etc_prefs['scotch'] = {
'SCOTCH_SYSTEM': 1,
'SCOTCH_DIR': pkg,
'SCOTCH_BIN_DIR': pkg.bin,
'SCOTCH_LIB_DIR': pkg.lib,
'SCOTCH_INCLUDE_DIR': pkg.include,
}
if self.parallel: if '+metis' in spec:
pkg = spec['metis'].prefix
self.etc_prefs['metis'] = {
'METIS_SYSTEM': 1,
'METIS_DIR': pkg,
'METIS_BIN_DIR': pkg.bin,
'METIS_LIB_DIR': pkg.lib,
'METIS_INCLUDE_DIR': pkg.include,
}
if '+parmetis' in spec:
pkg = spec['parmetis'].prefix
self.etc_prefs['parametis'] = {
'PARMETIS_SYSTEM': 1,
'PARMETIS_DIR': pkg,
'PARMETIS_BIN_DIR': pkg.bin,
'PARMETIS_LIB_DIR': pkg.lib,
'PARMETIS_INCLUDE_DIR': pkg.include,
}
if '+parmgridgen' in spec:
pkg = spec['parmgridgen'].prefix
self.etc_prefs['parmgridgen'] = {
'PARMGRIDGEN_SYSTEM': 1,
'PARMGRIDGEN_DIR': pkg,
'PARMGRIDGEN_BIN_DIR': pkg.bin,
'PARMGRIDGEN_LIB_DIR': pkg.lib,
'PARMGRIDGEN_INCLUDE_DIR': pkg.include,
}
if '+paraview' in self.spec:
self.etc_prefs['paraview'] = {
'PARAVIEW_SYSTEM': 1,
'PARAVIEW_DIR': spec['paraview'].prefix,
'PARAVIEW_BIN_DIR': spec['paraview'].prefix.bin,
}
self.etc_prefs['qt'] = {
'QT_SYSTEM': 1,
'QT_DIR': spec['qt'].prefix,
'QT_BIN_DIR': spec['qt'].prefix.bin,
}
# Write prefs files according to the configuration.
# Only need prefs.sh for building, but install both for end-users
write_environ(
self.etc_prefs,
posix=join_path('etc', 'prefs.sh'),
cshell=join_path('etc', 'prefs.csh'))
archCompiler = self.foam_sys['WM_ARCH'] + self.foam_sys['WM_COMPILER']
compileOpt = self.foam_cfg['WM_COMPILE_OPTION']
# general_rule = join_path('wmake', 'rules', 'General')
compiler_rule = join_path('wmake', 'rules', archCompiler)
generate_mplib_rules(compiler_rule, self.spec)
generate_compiler_rules(compiler_rule, compileOpt, self.rpath_info)
# Record the spack spec information
with open("log.spack-spec", 'w') as outfile:
outfile.write(spec.tree())
def build(self, spec, prefix):
"""Build using the OpenFOAM Allwmake script, with a wrapper to source
its environment first.
"""
self.set_openfoam() # Force proper population of foam_cfg/foam_sys
args = []
if self.parallel: # Build in parallel? - pass via the environment
os.environ['WM_NCOMPPROCS'] = str(self.make_jobs) \ os.environ['WM_NCOMPPROCS'] = str(self.make_jobs) \
if self.make_jobs else str(multiprocessing.cpu_count()) if self.make_jobs else str(multiprocessing.cpu_count())
builder = Executable(self.build_script)
builder(*args)
allwmake = Executable('./Allwmake') def install(self, spec, prefix):
allwmake() """Install under the projectdir (== prefix/name-version)"""
self.build(spec, prefix) # Should be a separate phase
opts = self.wm_options
install_path = \ # Fairly ugly since intermediate targets are scattered inside sources
join_path(self.prefix, appdir = 'applications'
'foam-extend-{0}'.format(self.version.up_to(2))) mkdirp(self.projectdir, join_path(self.projectdir, appdir))
# Retain build log file
out = "spack-build.out"
if isfile(out):
install(out, join_path(self.projectdir, "log." + opts))
# All top-level files, except spack build info and possibly Allwmake
if '+source' in spec:
ignored = re.compile(r'^spack-.*')
else:
ignored = re.compile(r'^(Allclean|Allwmake|spack-).*')
files = [
f for f in glob.glob("*") if isfile(f) and not ignored.search(f)
]
for f in files:
install(f, self.projectdir)
# Install directories. install applications/bin directly
for d in ['bin', 'etc', 'wmake', 'lib', join_path(appdir, 'bin')]:
install_tree(
d,
join_path(self.projectdir, d))
if '+source' in spec: if '+source' in spec:
install_tree('src', join_path(install_path, 'src')) subitem = join_path(appdir, 'Allwmake')
install_tree('tutorials', join_path(install_path, 'tutorials')) install(subitem, join_path(self.projectdir, subitem))
install_tree('lib', join_path(install_path, 'lib')) ignored = [opts] # Intermediate targets
install_tree('bin', join_path(install_path, 'bin')) for d in ['src', 'tutorials']:
install_tree('applications', join_path(install_path, 'applications')) install_tree(
install_tree('etc', join_path(install_path, 'etc')) d,
install_tree('wmake', join_path(install_path, 'wmake')) join_path(self.projectdir, d),
ignore=shutil.ignore_patterns(*ignored))
for d in ['solvers', 'utilities']:
install_tree(
join_path(appdir, d),
join_path(self.projectdir, appdir, d),
ignore=shutil.ignore_patterns(*ignored))
def install_links(self):
"""Add symlinks into bin/, lib/ (eg, for other applications)"""
return
# -----------------------------------------------------------------------------

503
var/spack/repos/builtin/packages/openfoam-com/openfoam-bin-1612.patch Normal file
View File

@ -0,0 +1,503 @@
--- OpenFOAM-v1612+.orig/bin/foamEtcFile 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/bin/foamEtcFile 2017-03-23 10:08:37.296887070 +0100
@@ -4,7 +4,7 @@
# \\ / F ield | OpenFOAM: The Open Source CFD Toolbox
# \\ / O peration |
# \\ / A nd | Copyright (C) 2011-2016 OpenFOAM Foundation
-# \\/ M anipulation |
+# \\/ M anipulation | Copyright (C) 2017 OpenCFD Ltd.
#-------------------------------------------------------------------------------
# License
# This file is part of OpenFOAM.
@@ -26,7 +26,7 @@
# foamEtcFile
#
# Description
-# Locate user/group/shipped file with semantics similar to the
+# Locate user/group/other files with semantics similar to the
# ~OpenFOAM/fileName expansion.
#
# The -mode option can be used to allow chaining from
@@ -34,40 +34,53 @@
#
# For example, within the user ~/.OpenFOAM/<VER>/prefs.sh:
# \code
-# foamPrefs=`$WM_PROJECT_DIR/bin/foamEtcFile -m go prefs.sh` \
-# && _foamSource $foamPrefs
+# eval $(foamEtcFile -sh -mode=go prefs.sh)
# \endcode
#
+# Environment
+# - WM_PROJECT: (unset defaults to OpenFOAM)
+# - WM_PROJECT_SITE: (unset defaults to PREFIX/site)
+# - WM_PROJECT_VERSION: (unset defaults to detect from path)
+#
# Note
-# This script must exist in $FOAM_INST_DIR/OpenFOAM-<VERSION>/bin/
-# or $FOAM_INST_DIR/openfoam<VERSION>/bin/ (for the debian version)
+# This script must exist in one of these locations:
+# - $WM_PROJECT_INST_DIR/OpenFOAM-<VERSION>/bin
+# - $WM_PROJECT_INST_DIR/openfoam-<VERSION>/bin
+# - $WM_PROJECT_INST_DIR/OpenFOAM+<VERSION>/bin
+# - $WM_PROJECT_INST_DIR/openfoam+<VERSION>/bin
+# - $WM_PROJECT_INST_DIR/openfoam<VERSION>/bin (debian version)
#
#-------------------------------------------------------------------------------
+unset optQuiet optSilent
usage() {
[ "${optQuiet:-$optSilent}" = true ] && exit 1
-
exec 1>&2
while [ "$#" -ge 1 ]; do echo "$1"; shift; done
cat<<USAGE
-Usage: ${0##*/} [OPTION] fileName
- ${0##*/} [OPTION] -list
+Usage: foamEtcFile [OPTION] fileName
+ foamEtcFile [OPTION] [-list|-list-test] [fileName]
options:
- -all return all files (otherwise stop after the first match)
- -list list the directories to be searched
- -mode <mode> any combination of u(user), g(group), o(other)
- -prefix <dir> specify an alternative installation prefix
- -quiet suppress all normal output
- -silent suppress all stderr output
- -version <ver> specify an alternative OpenFOAM version
- in the form Maj.Min.Rev (eg, 1.7.0)
- -help print the usage
+ -a, -all Return all files (otherwise stop after the first match)
+ -l, -list List directories or files to be checked
+ -list-test List (existing) directories or files to be checked
+ -mode=MODE Any combination of u(user), g(group), o(other)
+ -prefix=DIR Specify an alternative installation prefix
+ -version=VER Specify alternative OpenFOAM version (eg, 3.0, 1612, ...)
+ -csh | -sh Produce output suitable for a csh or sh 'eval'
+ -csh-verbose | -sh-verbose
+ As per -csh | -sh, with additional verbosity
+ -q, -quiet Suppress all normal output
+ -s, -silent Suppress stderr, except -csh-verbose, -sh-verbose output
+ -help Print the usage
- Locate user/group/shipped file with semantics similar to the
+ Locate user/group/other file with semantics similar to the
~OpenFOAM/fileName expansion.
- The options can also be specified as a single character
- (eg, '-q' instead of '-quiet'), but must not be grouped.
+ Single character options must not be grouped. Equivalent options:
+ -mode=MODE, -mode MODE, -m MODE
+ -prefix=DIR, -prefix DIR, -p DIR
+ -version=VER, -version VER, -v VER
Exit status
0 when the file is found. Print resolved path to stdout.
@@ -78,61 +91,117 @@
exit 1
}
-#-------------------------------------------------------------------------------
+# Report error and exit
+die()
+{
+ [ "${optQuiet:-$optSilent}" = true ] && exit 1
+ exec 1>&2
+ echo
+ echo "Error encountered:"
+ while [ "$#" -ge 1 ]; do echo " $1"; shift; done
+ echo
+ echo "See 'foamEtcFile -help' for usage"
+ echo
+ exit 1
+}
-# the bin dir:
-binDir="${0%/*}"
+#-------------------------------------------------------------------------------
+binDir="${0%/*}" # The bin dir
+projectDir="${binDir%/bin}" # The project dir
+prefixDir="${projectDir%/*}" # The prefix dir (same as $WM_PROJECT_INST_DIR)
-# the project dir:
+# Could not resolve projectDir, prefixDir? (eg, called as ./bin/foamEtcFile)
+if [ "$prefixDir" = "$projectDir" ]
+then
+ binDir="$(cd $binDir && pwd -L)"
projectDir="${binDir%/bin}"
-
-# the prefix dir (same as $FOAM_INST_DIR):
prefixDir="${projectDir%/*}"
+fi
+projectDirName="${projectDir##*/}" # The project directory name
-# the name used for the project directory
-projectDirName="${projectDir##*/}"
+projectName="${WM_PROJECT:-OpenFOAM}" # The project name
+projectVersion="$WM_PROJECT_VERSION" # Empty? - will be treated later
-# version number used for debian packaging
-unset versionNum
+#-------------------------------------------------------------------------------
+
+# Guess project version or simply get the stem part of the projectDirName.
+# Handle standard and debian naming conventions.
#
-# handle standard and debian naming convention
+# - projectVersion: update unless already set
#
-case "$projectDirName" in
-OpenFOAM-*) # standard naming convention OpenFOAM-<VERSION>
- version="${projectDirName##OpenFOAM-}"
- ;;
+# Helper variables:
+# - dirBase (for reassembling name) == projectDirName without the version
+# - versionNum (debian packaging)
+unset dirBase versionNum
+guessVersion()
+{
+ local version
-openfoam[0-9]* | openfoam-dev) # debian naming convention 'openfoam<VERSION>'
- versionNum="${projectDirName##openfoam}"
- case "$versionNum" in
- ??) # convert 2 digit version number to decimal delineated
- version=$(echo "$versionNum" | sed -e 's@\(.\)\(.\)@\1.\2@')
- ;;
- ???) # convert 3 digit version number to decimal delineated
- version=$(echo "$versionNum" | sed -e 's@\(.\)\(.\)\(.\)@\1.\2.\3@')
- ;;
- ????) # convert 4 digit version number to decimal delineated
- version=$(echo "$versionNum" | sed -e 's@\(.\)\(.\)\(.\)\(.\)@\1.\2.\3.\4@')
- ;;
- *) # failback - use current environment setting
- version="$WM_PROJECT_VERSION"
+ case "$projectDirName" in
+ (OpenFOAM-* | openfoam-*)
+ # Standard naming: OpenFOAM-<VERSION> or openfoam-<VERSION>
+ dirBase="${projectDirName%%-*}-"
+ version="${projectDirName#*-}"
+ version="${version%%*-}" # Extra safety, eg openfoam-version-packager
+ ;;
+
+ (OpenFOAM+* | openfoam+*)
+ # Alternative naming: OpenFOAM+<VERSION> or openfoam+<VERSION>
+ dirBase="${projectDirName%%+*}+"
+ version="${projectDirName#*+}"
+ version="${version%%*-}" # Extra safety, eg openfoam-version-packager
+ ;;
+
+ (openfoam[0-9]*)
+ # Debian naming: openfoam<VERSION>
+ dirBase="openfoam"
+ version="${projectDirName#openfoam}"
+ versionNum="$version"
+
+ # Convert digits version number to decimal delineated
+ case "${#versionNum}" in (2|3|4)
+ version=$(echo "$versionNum" | sed -e 's@\([0-9]\)@\1.@g')
+ version="${version%.}"
;;
esac
+
+ # Ignore special treatment if no decimals were inserted.
+ [ "${#version}" -gt "${#versionNum}" ] || unset versionNum
;;
-*)
- echo "Error : unknown/unsupported naming convention"
- exit 1
+ (*)
+ die "unknown/unsupported naming convention for '$projectDirName'"
;;
esac
+ # Set projectVersion if required
+ : ${projectVersion:=$version}
+}
+
+
+# Set projectVersion and update versionNum, projectDirName accordingly
+setVersion()
+{
+ projectVersion="$1"
+
+ # Need dirBase when reassembling projectDirName
+ [ -n "$dirBase" ] || guessVersion
+
+ # Debian: update x.y.z -> xyz version
+ if [ -n "$versionNum" ]
+ then
+ versionNum=$(echo "$projectVersion" | sed -e 's@\.@@g')
+ fi
+
+ projectDirName="$dirBase${versionNum:-$projectVersion}"
+}
+
-# default mode is 'ugo'
-mode=ugo
-unset optAll optList optQuiet optSilent
+optMode=ugo # Default mode is always 'ugo'
+unset optAll optList optShell optVersion
-# parse options
+# Parse options
while [ "$#" -gt 0 ]
do
case "$1" in
@@ -141,27 +210,45 @@
;;
-a | -all)
optAll=true
+ unset optShell
;;
-l | -list)
optList=true
+ unset optShell
+ ;;
+ -list-test)
+ optList='test'
+ unset optShell
+ ;;
+ -csh | -sh | -csh-verbose | -sh-verbose)
+ optShell="${1#-}"
+ unset optAll
+ ;;
+ -mode=[ugo]*)
+ optMode="${1#*=}"
+ ;;
+ -prefix=/*)
+ prefixDir="${1#*=}"
+ prefixDir="${prefixDir%/}"
+ ;;
+ -version=*)
+ optVersion="${1#*=}"
;;
-m | -mode)
- [ "$#" -ge 2 ] || usage "'$1' option requires an argument"
- mode="$2"
-
- # sanity check:
- case "$mode" in
- *u* | *g* | *o* )
+ optMode="$2"
+ shift
+ # Sanity check. Handles missing argument too.
+ case "$optMode" in
+ ([ugo]*)
;;
- *)
- usage "'$1' option with invalid mode '$mode'"
+ (*)
+ die "invalid mode '$optMode'"
;;
esac
- shift
;;
-p | -prefix)
- [ "$#" -ge 2 ] || usage "'$1' option requires an argument"
- prefixDir="$2"
+ [ "$#" -ge 2 ] || die "'$1' option requires an argument"
+ prefixDir="${2%/}"
shift
;;
-q | -quiet)
@@ -171,13 +258,8 @@
optSilent=true
;;
-v | -version)
- [ "$#" -ge 2 ] || usage "'$1' option requires an argument"
- version="$2"
- # convert x.y.z -> xyz version (if installation looked like debian)
- if [ -n "$versionNum" ]
- then
- versionNum=$(echo "$version" | sed -e 's@\.@@g')
- fi
+ [ "$#" -ge 2 ] || die "'$1' option requires an argument"
+ optVersion="$2"
shift
;;
--)
@@ -185,7 +267,7 @@
break
;;
-*)
- usage "unknown option: '$*'"
+ die "unknown option: '$1'"
;;
*)
break
@@ -195,11 +277,28 @@
done
-# debugging:
-# echo "Installed locations:"
-# for i in projectDir prefixDir projectDirName version versionNum
+#-------------------------------------------------------------------------------
+
+if [ -n "$optVersion" ]
+then
+ setVersion $optVersion
+elif [ -z "$projectVersion" ]
+then
+ guessVersion
+fi
+
+# Updates:
+# - projectDir for changes via -prefix or -version
+# - projectSite for changes via -prefix
+projectDir="$prefixDir/$projectDirName"
+projectSite="${WM_PROJECT_SITE:-$prefixDir/site}"
+
+
+# Debugging:
+# echo "Installed locations:" 1>&2
+# for i in projectDir prefixDir projectDirName projectVersion
# do
-# eval echo "$i=\$$i"
+# eval echo "$i=\$$i" 1>&2
# done
@@ -210,30 +309,18 @@
# Define the various places to be searched:
unset dirList
-case "$mode" in
-*u*) # user
- userDir="$HOME/.${WM_PROJECT:-OpenFOAM}"
- dirList="$dirList $userDir/$version $userDir"
+case "$optMode" in (*u*) # (U)ser
+ dirList="$dirList $HOME/.$projectName/$projectVersion $HOME/.$projectName"
;;
esac
-case "$mode" in
-*g*) # group (site)
- siteDir="${WM_PROJECT_SITE:-$prefixDir/site}"
- dirList="$dirList $siteDir/$version $siteDir"
+case "$optMode" in (*g*) # (G)roup == site
+ dirList="$dirList $projectSite/$projectVersion $projectSite"
;;
esac
-case "$mode" in
-*o*) # other (shipped)
- if [ -n "$versionNum" ]
- then
- # debian packaging
- dirList="$dirList $prefixDir/openfoam$versionNum/etc"
- else
- # standard packaging
- dirList="$dirList $prefixDir/${WM_PROJECT:-OpenFOAM}-$version/etc"
- fi
+case "$optMode" in (*o*) # (O)ther == shipped
+ dirList="$dirList $projectDir/etc"
;;
esac
set -- $dirList
@@ -244,50 +331,87 @@
#
exitCode=0
-if [ "$optList" = true ]
+if [ -n "$optList" ]
then
- # list directories, or potential file locations
- [ "$nArgs" -le 1 ] || usage
+ # List directories, or potential file locations
+ [ "$nArgs" -le 1 ] || \
+ die "-list expects 0 or 1 filename, but $nArgs provided"
+
+ # A silly combination, but -quiet does have precedence
+ [ -n "$optQuiet" ] && exit 0
- # a silly combination, but -quiet does have precedence
- [ "$optQuiet" = true ] && exit 0
+ # Test for directory or file too?
+ if [ "$optList" = "test" ]
+ then
+ exitCode=2 # Fallback to a general error (file not found)
+ if [ "$nArgs" -eq 1 ]
+ then
for dir
do
- if [ "$nArgs" -eq 1 ]
+ resolved="$dir/$fileName"
+ if [ -f "$resolved" ]
then
- echo "$dir/$fileName"
+ echo "$resolved"
+ exitCode=0 # OK
+ fi
+ done
else
+ for dir
+ do
+ if [ -d "$dir" ]
+ then
echo "$dir"
+ exitCode=0 # OK
fi
done
+ fi
+ else
+ for dir
+ do
+ echo "$dir${fileName:+/}$fileName"
+ done
+ fi
else
- [ "$nArgs" -eq 1 ] || usage
+ [ "$nArgs" -eq 1 ] || die "One filename expected - $nArgs provided"
- # general error, eg file not found
- exitCode=2
+ exitCode=2 # Fallback to a general error (file not found)
for dir
do
if [ -f "$dir/$fileName" ]
then
exitCode=0
- if [ "$optQuiet" = true ]
- then
+ [ -n "$optQuiet" ] && break
+
+ case "$optShell" in
+ (*verbose)
+ echo "Using: $dir/$fileName" 1>&2
+ ;;
+ esac
+
+ case "$optShell" in
+ csh*)
+ echo "source $dir/$fileName"
break
- else
+ ;;
+ sh*)
+ echo ". $dir/$fileName"
+ break
+ ;;
+ *)
echo "$dir/$fileName"
- [ "$optAll" = true ] || break
- fi
+ [ -n "$optAll" ] || break
+ ;;
+ esac
fi
done
fi
-
exit $exitCode
#------------------------------------------------------------------------------

17
var/spack/repos/builtin/packages/openfoam-com/openfoam-build-1612.patch Normal file
View File

@ -0,0 +1,17 @@
--- OpenFOAM-v1612+.orig/Allwmake 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/Allwmake 2017-03-29 09:08:15.503865203 +0200
@@ -17,6 +17,14 @@
exit 1
}
+#------------------------------------------------------------------------------
+echo "========================================"
+date "+%Y-%m-%d %H:%M:%S %z" 2>/dev/null || echo "date is unknown"
+echo "Starting ${WM_PROJECT_DIR##*/} ${0##*}"
+echo " $WM_COMPILER $WM_COMPILER_TYPE compiler"
+echo " ${WM_OPTIONS}, with ${WM_MPLIB} ${FOAM_MPI}"
+echo
+
# Compile wmake support applications
(cd wmake/src && make)

41
var/spack/repos/builtin/packages/openfoam-com/openfoam-etc-1612.patch Normal file
View File

@ -0,0 +1,41 @@
--- OpenFOAM-v1612+.orig/etc/bashrc 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/etc/bashrc 2017-03-22 16:05:05.751237072 +0100
@@ -42,7 +42,8 @@
#
# Please set to the appropriate path if the default is not correct.
#
-[ $BASH_SOURCE ] && FOAM_INST_DIR=$(\cd ${BASH_SOURCE%/*/*/*} && \pwd -P) || \
+rc="${BASH_SOURCE:-${ZSH_NAME:+$0}}"
+[ -n "$rc" ] && FOAM_INST_DIR=$(\cd $(dirname $rc)/../.. && \pwd -L) || \
FOAM_INST_DIR=$HOME/$WM_PROJECT
# FOAM_INST_DIR=~$WM_PROJECT
# FOAM_INST_DIR=/opt/$WM_PROJECT
@@ -135,8 +136,10 @@
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
. $WM_PROJECT_DIR/etc/config.sh/functions
-# Add in preset user or site preferences:
-_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile prefs.sh`
+# Override definitions via prefs, with 'other' first so the sys-admin
+# can provide base values independent of WM_PROJECT_SITE
+_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile -mode o prefs.sh`
+_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile -mode ug prefs.sh`
# Evaluate command-line parameters and record settings for later
# these can be used to set/unset values, or specify alternative pref files
diff -uw OpenFOAM-v1612+.orig/etc/cshrc OpenFOAM-v1612+/etc/cshrc
--- OpenFOAM-v1612+.orig/etc/cshrc 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/etc/cshrc 2017-03-22 16:04:51.839291067 +0100
@@ -148,8 +148,10 @@
# Source files, possibly with some verbosity
alias _foamSource 'if ($?FOAM_VERBOSE && $?prompt) echo "Sourcing: \!*"; if (\!* != "") source \!*'
-# Add in preset user or site preferences:
-_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile prefs.csh`
+# Override definitions via prefs, with 'other' first so the sys-admin
+# can provide base values independent of WM_PROJECT_SITE
+_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile -mode o prefs.csh`
+_foamSource `$WM_PROJECT_DIR/bin/foamEtcFile -mode ug prefs.csh`
# Evaluate command-line parameters and record settings for later
# these can be used to set/unset values, or specify alternative pref files

36
var/spack/repos/builtin/packages/openfoam-com/openfoam-mpi-1612.patch Normal file
View File

@ -0,0 +1,36 @@
--- OpenFOAM-v1612+.orig/etc/config.sh/mpi 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/etc/config.sh/mpi 2017-03-29 13:55:57.507980699 +0200
@@ -75,8 +75,15 @@
_foamAddMan $MPI_ARCH_PATH/share/man
;;
+USERMPI)
+ # Use an arbitrary, user-specified mpi implementation
+ export FOAM_MPI=mpi-user
+ _foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config.sh/mpi-user`
+ ;;
+
SYSTEMMPI)
export FOAM_MPI=mpi-system
+ _foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config.sh/mpi-system`
if [ -z "$MPI_ROOT" ]
then
--- OpenFOAM-v1612+.orig/etc/config.csh/mpi 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/etc/config.csh/mpi 2017-03-29 13:56:36.347835938 +0200
@@ -71,8 +71,15 @@
_foamAddMan $MPI_ARCH_PATH/share/man
breaksw
+case USERMPI:
+ # Use an arbitrary, user-specified mpi implementation
+ setenv FOAM_MPI mpi-user
+ _foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config.csh/mpi-user`
+ breaksw
+
case SYSTEMMPI:
setenv FOAM_MPI mpi-system
+ _foamSource `$WM_PROJECT_DIR/bin/foamEtcFile config.csh/mpi-system`
if ( ! ($?MPI_ROOT) ) then
echo

42
var/spack/repos/builtin/packages/openfoam-com/openfoam-site.patch Normal file
View File

@ -0,0 +1,42 @@
diff -uw OpenFOAM-v1612+.orig/etc/config.sh/settings OpenFOAM-v1612+/etc/config.sh/settings
--- OpenFOAM-v1612+.orig/etc/config.sh/settings 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/etc/config.sh/settings 2017-03-23 12:22:52.002101020 +0100
@@ -141,7 +141,7 @@
#------------------------------------------------------------------------------
# Location of the jobControl directory
-export FOAM_JOB_DIR=$WM_PROJECT_INST_DIR/jobControl
+export FOAM_JOB_DIR=$HOME/$WM_PROJECT/jobControl #SPACK: non-central location
# wmake configuration
export WM_DIR=$WM_PROJECT_DIR/wmake
@@ -157,7 +157,7 @@
export FOAM_EXT_LIBBIN=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/lib
# Site-specific directory
-siteDir="${WM_PROJECT_SITE:-$WM_PROJECT_INST_DIR/site}"
+siteDir="${WM_PROJECT_SITE:-$WM_PROJECT/site}" #SPACK: not in parent directory
# Shared site executables/libraries
# Similar naming convention as ~OpenFOAM expansion
diff -uw OpenFOAM-v1612+.orig/etc/config.csh/settings OpenFOAM-v1612+/etc/config.csh/settings
--- OpenFOAM-v1612+.orig/etc/config.csh/settings 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/etc/config.csh/settings 2017-03-23 12:23:52.737891912 +0100
@@ -137,7 +137,7 @@
#------------------------------------------------------------------------------
# Location of the jobControl directory
-setenv FOAM_JOB_DIR $WM_PROJECT_INST_DIR/jobControl
+setenv FOAM_JOB_DIR=$HOME/$WM_PROJECT/jobControl #SPACK: non-central location
# wmake configuration
setenv WM_DIR $WM_PROJECT_DIR/wmake
@@ -156,7 +156,7 @@
if ( $?WM_PROJECT_SITE ) then
set siteDir=$WM_PROJECT_SITE
else
- set siteDir=$WM_PROJECT_INST_DIR/site
+ set siteDir=$WM_PROJECT_DIR/site #SPACK: not in parent directory
endif
# Shared site executables/libraries

722
var/spack/repos/builtin/packages/openfoam-com/package.py Normal file
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@ -0,0 +1,722 @@
##############################################################################
# Copyright (c) 2017 Mark Olesen, OpenCFD Ltd.
#
# This file was authored by Mark Olesen <mark.olesen@esi-group.com>
# and is released as part of spack under the LGPL license.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for the LLNL notice and the LGPL.
#
# License
# -------
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# Legal Notice
# ------------
# OPENFOAM is a trademark owned by OpenCFD Ltd
# (producer and distributor of the OpenFOAM software via www.openfoam.com).
# The trademark information must remain visible and unadulterated in this
# file and via the "spack info" and comply with the term set by
# http://openfoam.com/legal/trademark-policy.php
#
# This file is not part of OpenFOAM, nor does it constitute a component of an
# OpenFOAM distribution.
#
##############################################################################
#
# Notes
# - mpi handling: WM_MPLIB=USERMPI and use spack to populate an appropriate
# configuration and generate wmake rules for 'USER' and 'USERMPI'
# mpi implementations.
#
# - Resolution of flex, zlib needs more attention (within OpenFOAM)
# - +paraview:
# depends_on should just be 'paraview+plugins' but that resolves poorly.
# Workaround: use preferred variants "+plugins +qt"
# packages:
# paraview:
# variants: +plugins +qt
# in ~/.spack/packages.yaml
#
# - Combining +zoltan with +int64 has not been tested, but probably won't work.
#
##############################################################################
from spack import *
from spack.environment import *
import glob
import re
import shutil
import os
from os.path import isdir, isfile
# Not the nice way of doing things, but is a start for refactoring
__all__ = [
'format_export',
'format_setenv',
'write_environ',
'rewrite_environ_files',
'mplib_content',
'generate_mplib_rules',
'generate_compiler_rules',
]
def format_export(key, value):
"""Format key,value pair as 'export' with newline for POSIX shell."""
return 'export {0}={1}\n'.format(key, value)
def format_setenv(key, value):
"""Format key,value pair as 'setenv' with newline for C-shell."""
return 'setenv {0} {1}\n'.format(key, value)
def _write_environ_entries(outfile, environ, formatter):
"""Write environment settings as 'export' or 'setenv'.
If environ is a dict, write in sorted order.
If environ is a list, write pair-wise.
Also descends into sub-dict and sub-list, but drops the key.
"""
if isinstance(environ, dict):
for key in sorted(environ):
entry = environ[key]
if isinstance(entry, dict):
_write_environ_entries(outfile, entry, formatter)
elif isinstance(entry, list):
_write_environ_entries(outfile, entry, formatter)
else:
outfile.write(formatter(key, entry))
elif isinstance(environ, list):
for item in environ:
outfile.write(formatter(item[0], item[1]))
def _write_environ_file(output, environ, formatter):
"""Write environment settings as 'export' or 'setenv'.
If environ is a dict, write in sorted order.
If environ is a list, write pair-wise.
Also descends into sub-dict and sub-list, but drops the key.
"""
with open(output, 'w') as outfile:
outfile.write('# SPACK settings\n\n')
_write_environ_entries(outfile, environ, formatter)
def write_environ(environ, **kwargs):
"""Write environment settings as 'export' or 'setenv'.
If environ is a dict, write in sorted order.
If environ is a list, write pair-wise.
Keyword Options:
posix[=None] If set, the name of the POSIX file to rewrite.
cshell[=None] If set, the name of the C-shell file to rewrite.
"""
posix = kwargs.get('posix', None)
if posix:
_write_environ_file(posix, environ, format_export)
cshell = kwargs.get('cshell', None)
if cshell:
_write_environ_file(cshell, environ, format_setenv)
def rewrite_environ_files(environ, **kwargs):
"""Use filter_file to rewrite (existing) POSIX shell or C-shell files.
Keyword Options:
posix[=None] If set, the name of the POSIX file to rewrite.
cshell[=None] If set, the name of the C-shell file to rewrite.
"""
posix = kwargs.get('posix', None)
if posix and isfile(posix):
for k, v in environ.iteritems():
filter_file(
r'^(\s*export\s+%s)=.*$' % k,
r'\1=%s' % v,
posix,
backup=False)
cshell = kwargs.get('cshell', None)
if cshell and isfile(cshell):
for k, v in environ.iteritems():
filter_file(
r'^(\s*setenv\s+%s)\s+.*$' % k,
r'\1 %s' % v,
cshell,
backup=False)
def pkglib(package):
"""Get lib64 or lib from package prefix"""
libdir = package.prefix.lib64
if isdir(libdir):
return libdir
return package.prefix.lib
def mplib_content(spec, pre=None):
"""The mpi settings to have wmake
use spack information with minimum modifications to OpenFOAM.
Optional parameter 'pre' to provid alternative prefix
"""
mpi_spec = spec['mpi']
bin = mpi_spec.prefix.bin
inc = mpi_spec.prefix.include
lib = pkglib(mpi_spec)
if pre:
bin = join_path(pre, os.path.basename(bin))
inc = join_path(pre, os.path.basename(inc))
lib = join_path(pre, os.path.basename(lib))
else:
pre = mpi_spec.prefix
info = {
'name': '{0}-{1}'.format(mpi_spec.name, mpi_spec.version),
'prefix': pre,
'include': inc,
'bindir': bin,
'libdir': lib,
'FLAGS': '-DOMPI_SKIP_MPICXX -DMPICH_IGNORE_CXX_SEEK',
'PINC': '-I{0}'.format(inc),
'PLIBS': '-L{0} -lmpi'.format(lib),
}
return info
def generate_mplib_rules(directory, spec):
""" Create mplibUSER,mplibUSERMPI rules in the specified directory"""
content = mplib_content(spec)
with working_dir(directory):
for mplib in ['mplibUSER', 'mplibUSERMPI']:
with open(mplib, 'w') as out:
out.write("""# Use mpi from spack ({name})\n
PFLAGS = {FLAGS}
PINC = {PINC}
PLIBS = {PLIBS}
""".format(**content))
def generate_compiler_rules(directory, compOpt, value):
""" Create cSPACKOpt,c++SPACKOpt rules in the specified directory.
The file content is copied and filtered from the corresponding
cOpt,c++Opt rules"""
# Compiler options for SPACK - eg, wmake/rules/linux64Gcc/
# Copy from existing cOpt, c++Opt and modify DBUG value
with working_dir(directory):
for lang in ['c', 'c++']:
src = '{0}Opt'.format(lang)
dst = '{0}{1}'.format(lang, compOpt)
shutil.copyfile(src, dst) # src -> dst
filter_file(
r'^(\S+DBUG\s*)=.*$',
r'\1= %s' % value,
dst,
backup=False)
class OpenfoamCom(Package):
"""OpenFOAM is a GPL-opensource C++ CFD-toolbox.
This offering is supported by OpenCFD Ltd,
producer and distributor of the OpenFOAM software via www.openfoam.com,
and owner of the OPENFOAM trademark.
OpenCFD Ltd has been developing and releasing OpenFOAM since its debut
in 2004.
"""
homepage = "http://www.openfoam.com/"
baseurl = "https://sourceforge.net/projects/openfoamplus/files"
version('1612', 'ca02c491369150ab127cbb88ec60fbdf',
url=baseurl + '/v1612+/OpenFOAM-v1612+.tgz')
variant('int64', default=False,
description='Compile with 64-bit labels')
variant('float32', default=False,
description='Compile with 32-bit scalar (single-precision)')
variant('knl', default=False,
description='Use KNL compiler settings')
variant('scotch', default=True,
description='With scotch/ptscotch for decomposition')
variant('metis', default=False,
description='With metis for decomposition')
variant('zoltan', default=False,
description='With zoltan renumbering')
# TODO?# variant('parmgridgen', default=True,
# TODO?# description='With parmgridgen support')
variant('source', default=True,
description='Install library/application sources and tutorials')
variant('paraview', default=True,
description='Build paraview plugins and runtime post-processing')
#: Map spack compiler names to OpenFOAM compiler names
# By default, simply capitalize the first letter
compiler_mapping = {'intel': 'icc'}
provides('openfoam')
depends_on('mpi')
depends_on('zlib')
depends_on('fftw')
depends_on('boost')
depends_on('cgal')
depends_on('flex@:2.6.1') # <- restriction due to scotch
depends_on('cmake', type='build')
# Require scotch with ptscotch - corresponds to standard OpenFOAM setup
depends_on('scotch~int64+mpi', when='+scotch~int64')
depends_on('scotch+int64+mpi', when='+scotch+int64')
depends_on('metis@5:', when='+metis')
depends_on('metis+int64', when='+metis+int64')
depends_on('parmgridgen', when='+parmgridgen')
depends_on('zoltan', when='+zoltan')
# For OpenFOAM plugins and run-time post-processing this should just be
# 'paraview+plugins' but that resolves poorly.
# Workaround: use preferred variants "+plugins +qt" in
# ~/.spack/packages.yaml
# 1612 plugins need older paraview
# The native reader in paraview 5.2 is broken, so start after that
depends_on('paraview@:5.0.1', when='@:1612+paraview')
depends_on('paraview@5.3:', when='@1706:+paraview')
# General patches
patch('openfoam-site.patch')
# Version-specific patches
patch('openfoam-bin-1612.patch', when='@1612')
patch('openfoam-etc-1612.patch', when='@1612')
patch('openfoam-mpi-1612.patch', when='@1612')
patch('openfoam-build-1612.patch', when='@1612')
patch('scotch-metis-lib-1612.patch', when='@1612')
patch('zoltan-lib-1612.patch', when='@1612')
# Some user settings, to be adjusted manually or via variants
foam_cfg = {
'WM_COMPILER': 'Gcc', # <- %compiler
'WM_ARCH_OPTION': '64', # (32/64-bit on x86_64)
'WM_LABEL_SIZE': '32', # <- +int64
'WM_PRECISION_OPTION': 'DP', # <- +float32
'WM_COMPILE_OPTION': 'SPACKOpt', # Do not change
'WM_MPLIB': 'USERMPI', # Use user mpi for spack
}
# The system description is frequently needed
foam_sys = {
'WM_ARCH': None,
'WM_COMPILER': None,
'WM_OPTIONS': None,
}
# Content for etc/prefs.{csh,sh}
etc_prefs = {}
# Content for etc/config.{csh,sh}/ files
etc_config = {}
build_script = './spack-Allwmake' # <- Generated by patch() method.
# phases = ['configure', 'build', 'install']
# build_system_class = 'OpenfoamCom'
# Add symlinks into bin/, lib/ (eg, for other applications)
extra_symlinks = False
# Quickly enable/disable testing with the current develop branch
if False:
version(
'plus',
branch='develop',
git='file://{0}/{1}'
.format(os.path.expanduser("~"), 'openfoam/OpenFOAM-plus/.git'))
def setup_environment(self, spack_env, run_env):
run_env.set('WM_PROJECT_DIR', self.projectdir)
@property
def projectdir(self):
"""Absolute location of project directory: WM_PROJECT_DIR/"""
return self.prefix # <- install directly under prefix
@property
def etc(self):
"""Absolute location of the OpenFOAM etc/ directory"""
return join_path(self.projectdir, 'etc')
@property
def archbin(self):
"""Relative location of architecture-specific executables"""
return join_path('platforms', self.wm_options, 'bin')
@property
def archlib(self):
"""Relative location of architecture-specific libraries"""
return join_path('platforms', self.wm_options, 'lib')
@property
def wm_options(self):
"""The architecture+compiler+options for OpenFOAM"""
opts = self.set_openfoam()
return opts
@property
def rpath_info(self):
"""Define 'SPACKOpt' compiler optimization file to have wmake
use spack information with minimum modifications to OpenFOAM
"""
build_libpath = join_path(self.stage.source_path, self.archlib)
install_libpath = join_path(self.projectdir, self.archlib)
# 'DBUG': rpaths
return '{0}{1} {2}{3}'.format(
self.compiler.cxx_rpath_arg, install_libpath,
self.compiler.cxx_rpath_arg, build_libpath)
def openfoam_arch(self):
"""Return an architecture value similar to what OpenFOAM does in
etc/config.sh/settings, but slightly more generous.
Uses and may adjust foam_cfg[WM_ARCH_OPTION] as a side-effect
"""
# spec.architecture.platform is like `uname -s`, but lower-case
platform = self.spec.architecture.platform
# spec.architecture.target is like `uname -m`
target = self.spec.architecture.target
if platform == 'linux':
if target == 'i686':
self.foam_cfg['WM_ARCH_OPTION'] = '32' # Force consistency
elif target == 'x86_64':
if self.foam_cfg['WM_ARCH_OPTION'] == '64':
platform += '64'
elif target == 'ia64':
platform += 'ia64'
elif target == 'armv7l':
platform += 'ARM7'
elif target == ppc64:
platform += 'PPC64'
elif target == ppc64le:
platform += 'PPC64le'
elif platform == 'darwin':
if target == 'x86_64':
platform += 'Intel'
if self.foam_cfg['WM_ARCH_OPTION'] == '64':
platform += '64'
# ... and others?
return platform
def openfoam_compiler(self):
"""Capitalized version of the compiler name, which usually corresponds
to how OpenFOAM will camel-case things.
Use compiler_mapping to handing special cases.
Also handle special compiler options (eg, KNL)
"""
comp = self.compiler.name
if comp in self.compiler_mapping:
comp = self.compiler_mapping[comp]
comp = comp.capitalize()
if '+knl' in self.spec:
comp += 'KNL'
return comp
def set_openfoam(self):
"""Populate foam_cfg, foam_sys according to
variants, architecture, compiler.
Returns WM_OPTIONS.
"""
# Run once
opts = self.foam_sys['WM_OPTIONS']
if opts:
return opts
wm_arch = self.openfoam_arch()
wm_compiler = self.openfoam_compiler()
compileOpt = self.foam_cfg['WM_COMPILE_OPTION']
# Insist on a wmake rule for this architecture/compiler combination
archCompiler = wm_arch + wm_compiler
compiler_rule = join_path(
self.stage.source_path, 'wmake', 'rules', archCompiler)
if not isdir(compiler_rule):
raise RuntimeError(
'No wmake rule for {0}'.format(archCompiler))
if not re.match(r'.+Opt$', compileOpt):
raise RuntimeError(
"WM_COMPILE_OPTION={0} is not type '*Opt'".format(compileOpt))
# Adjust for variants
self.foam_cfg['WM_LABEL_SIZE'] = (
'64' if '+int64' in self.spec else '32'
)
self.foam_cfg['WM_PRECISION_OPTION'] = (
'SP' if '+float32' in self.spec else 'DP'
)
# ----
# WM_LABEL_OPTION=Int$WM_LABEL_SIZE
# WM_OPTIONS=$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION$WM_COMPILE_OPTION
# ----
self.foam_sys['WM_ARCH'] = wm_arch
self.foam_sys['WM_COMPILER'] = wm_compiler
self.foam_cfg['WM_COMPILER'] = wm_compiler # For bashrc,cshrc too
self.foam_sys['WM_OPTIONS'] = ''.join([
wm_arch,
wm_compiler,
self.foam_cfg['WM_PRECISION_OPTION'],
'Int', self.foam_cfg['WM_LABEL_SIZE'], # Int32/Int64
compileOpt
])
return self.foam_sys['WM_OPTIONS']
def patch(self):
"""Adjust OpenFOAM build for spack. Where needed, apply filter as an
alternative to normal patching.
"""
self.set_openfoam() # May need foam_cfg/foam_sys information
# Avoid WM_PROJECT_INST_DIR for ThirdParty, site or jobControl.
# Use openfoam-site.patch to handle jobControl, site.
#
# Filter (not patch) bashrc,cshrc for additional flexibility
wm_setting = {
'WM_THIRD_PARTY_DIR':
r'$WM_PROJECT_DIR/ThirdParty #SPACK: No separate third-party',
}
rewrite_environ_files( # Adjust etc/bashrc and etc/cshrc
wm_setting,
posix=join_path('etc', 'bashrc'),
cshell=join_path('etc', 'cshrc'))
# Adjust ParMGridGen - this is still a mess.
# We also have no assurances about sizes (int/long, float/double) etc.
#
# Need to adjust src/fvAgglomerationMethods/Allwmake
# "export ParMGridGen=%s" % spec['parmgridgen'].prefix
#
# and src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options
# "-I=%s" % spec['parmgridgen'].include
# "-L=%s -lmgrid" % spec['parmgridgen'].lib
# Build wrapper script
with open(self.build_script, 'w') as out:
out.write(
"""#!/bin/bash
. $PWD/etc/bashrc '' # No arguments
mkdir -p $FOAM_APPBIN $FOAM_LIBBIN 2>/dev/null # Allow interrupt
echo Build openfoam with SPACK
echo WM_PROJECT_DIR = $WM_PROJECT_DIR
./Allwmake $@
#
""")
set_executable(self.build_script)
self.configure(self.spec, self.prefix) # Should be a separate phase
def configure(self, spec, prefix):
"""Make adjustments to the OpenFOAM configuration files in their various
locations: etc/bashrc, etc/config.sh/FEATURE and customizations that
don't properly fit get placed in the etc/prefs.sh file (similiarly for
csh).
"""
self.set_openfoam() # Need foam_cfg/foam_sys information
# Some settings for filtering bashrc, cshrc
wm_setting = {}
wm_setting.update(self.foam_cfg)
rewrite_environ_files( # Adjust etc/bashrc and etc/cshrc
wm_setting,
posix=join_path('etc', 'bashrc'),
cshell=join_path('etc', 'cshrc'))
# Content for etc/prefs.{csh,sh}
self.etc_prefs = {
# TODO
# 'CMAKE_ARCH_PATH': spec['cmake'].prefix,
# 'FLEX_ARCH_PATH': spec['flex'].prefix,
# 'ZLIB_ARCH_PATH': spec['zlib'].prefix,
}
# MPI content, using MPI_ARCH_PATH
content = mplib_content(spec, '${MPI_ARCH_PATH}')
# Content for etc/config.{csh,sh}/ files
self.etc_config = {
'CGAL': {
'BOOST_ARCH_PATH': spec['boost'].prefix,
'CGAL_ARCH_PATH': spec['cgal'].prefix,
},
'FFTW': {
'FFTW_ARCH_PATH': spec['fftw'].prefix,
},
# User-defined MPI
'mpi-user': [
('MPI_ARCH_PATH', spec['mpi'].prefix), # Absolute
('LD_LIBRARY_PATH',
'"%s:${LD_LIBRARY_PATH}"' % content['libdir']),
('PATH', '"%s:${PATH}"' % content['bindir']),
],
'scotch': {},
'metis': {},
'paraview': [],
}
if '+scotch' in spec:
self.etc_config['scotch'] = {
'SCOTCH_ARCH_PATH': spec['scotch'].prefix,
# For src/parallel/decompose/Allwmake
'SCOTCH_VERSION': 'scotch-{0}'.format(spec['scotch'].version),
}
if '+metis' in spec:
self.etc_config['metis'] = {
'METIS_ARCH_PATH': spec['metis'].prefix,
}
if '+paraview' in spec:
pvMajor = 'paraview-{0}'.format(spec['paraview'].version.up_to(2))
self.etc_config['paraview'] = [
('ParaView_DIR', spec['paraview'].prefix),
('ParaView_INCLUDE_DIR', '$ParaView_DIR/include/' + pvMajor),
('PV_PLUGIN_PATH', '$FOAM_LIBBIN/' + pvMajor),
('PATH', '"${ParaView_DIR}/bin:${PATH}"'),
]
# Not normally included as etc/config file
if '+parmgridgen' in spec:
self.etc_config['parmgridgen'] = {
'PARMGRIDGEN_ARCH_PATH': spec['parmgridgen'].prefix
}
# Optional
if '+zoltan' in spec:
self.etc_config['zoltan'] = {
'ZOLTAN_ARCH_PATH': spec['zoltan'].prefix
}
# Write prefs files according to the configuration.
# Only need prefs.sh for building, but install both for end-users
if self.etc_prefs:
write_environ(
self.etc_prefs,
posix=join_path('etc', 'prefs.sh'),
cshell=join_path('etc', 'prefs.csh'))
# Adjust components to use SPACK variants
for component, subdict in self.etc_config.iteritems():
write_environ(
subdict,
posix=join_path('etc', 'config.sh', component),
cshell=join_path('etc', 'config.csh', component))
archCompiler = self.foam_sys['WM_ARCH'] + self.foam_sys['WM_COMPILER']
compileOpt = self.foam_cfg['WM_COMPILE_OPTION']
general_rule = join_path('wmake', 'rules', 'General')
compiler_rule = join_path('wmake', 'rules', archCompiler)
generate_mplib_rules(general_rule, self.spec)
generate_compiler_rules(compiler_rule, compileOpt, self.rpath_info)
# Record the spack spec information
with open("log.spack-spec", 'w') as outfile:
outfile.write(spec.tree())
def build(self, spec, prefix):
"""Build using the OpenFOAM Allwmake script, with a wrapper to source
its environment first.
"""
self.set_openfoam() # Force proper population of foam_cfg/foam_sys
args = ['-silent']
if self.parallel: # Build in parallel? - pass as an argument
args.append(
'-j{0}'.format(str(self.make_jobs) if self.make_jobs else ''))
builder = Executable(self.build_script)
builder(*args)
def install(self, spec, prefix):
"""Install under the projectdir (== prefix)"""
self.build(spec, prefix) # Should be a separate phase
opts = self.wm_options
mkdirp(self.projectdir)
projdir = os.path.basename(self.projectdir)
wm_setting = {
'WM_PROJECT_INST_DIR': os.path.dirname(self.projectdir),
'WM_PROJECT_DIR': join_path('$WM_PROJECT_INST_DIR', projdir),
}
# Retain build log file
out = "spack-build.out"
if isfile(out):
install(out, join_path(self.projectdir, "log." + opts))
# All top-level files, except spack build info and possibly Allwmake
if '+source' in spec:
ignored = re.compile(r'^spack-.*')
else:
ignored = re.compile(r'^(Allwmake|spack-).*')
files = [
f for f in glob.glob("*") if isfile(f) and not ignored.search(f)
]
for f in files:
install(f, self.projectdir)
# Having wmake without sources is actually somewhat pointless...
dirs = ['bin', 'etc', 'wmake']
if '+source' in spec:
dirs.extend(['applications', 'src', 'tutorials'])
for d in dirs:
install_tree(
d,
join_path(self.projectdir, d))
dirs = ['platforms']
if '+source' in spec:
dirs.extend(['doc'])
# Install platforms (and doc) skipping intermediate targets
ignored = ['src', 'applications', 'html', 'Guides']
for d in dirs:
install_tree(
d,
join_path(self.projectdir, d),
ignore=shutil.ignore_patterns(*ignored))
rewrite_environ_files( # Adjust etc/bashrc and etc/cshrc
wm_setting,
posix=join_path(self.etc, 'bashrc'),
cshell=join_path(self.etc, 'cshrc'))
self.install_links()
def install_links(self):
"""Add symlinks into bin/, lib/ (eg, for other applications)"""
if not self.extra_symlinks:
return
# ln -s platforms/linux64GccXXX/lib lib
with working_dir(self.projectdir):
if isdir(self.archlib):
os.symlink(self.archlib, 'lib')
# (cd bin && ln -s ../platforms/linux64GccXXX/bin/* .)
with working_dir(join_path(self.projectdir, 'bin')):
for f in [
f for f in glob.glob(join_path('..', self.archbin, "*"))
if isfile(f)
]:
os.symlink(f, os.path.basename(f))
# -----------------------------------------------------------------------------

48
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@ -0,0 +1,48 @@
--- OpenFOAM-v1612+.orig/src/parallel/decompose/Allwmake 2017-03-21 16:34:44.599021283 +0100
+++ OpenFOAM-v1612+/src/parallel/decompose/Allwmake 2017-03-21 16:28:57.243969660 +0100
@@ -36,6 +36,7 @@
# Library
[ -r $FOAM_EXT_LIBBIN/libmetis.so ] || \
+ [ -r $METIS_ARCH_PATH/lib/libmetis.so ] || \
[ -r $METIS_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libmetis.so ] || \
[ "${METIS_ARCH_PATH##*-}" = system ] || {
echo "$warning (missing library)"
@@ -90,6 +91,7 @@
# Library
[ -r $FOAM_EXT_LIBBIN/libscotch.so ] || \
+ [ -r $SCOTCH_ARCH_PATH/lib/libscotch.so ] || \
[ -r $SCOTCH_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libscotch.so ] || \
[ "${SCOTCH_ARCH_PATH##*-}" = system ] || {
echo "$warning (missing library)"
--- OpenFOAM-v1612+.orig/src/parallel/decompose/metisDecomp/Make/options 2017-03-21 16:34:25.383075328 +0100
+++ OpenFOAM-v1612+/src/parallel/decompose/metisDecomp/Make/options 2017-03-21 16:30:15.727758338 +0100
@@ -8,6 +8,7 @@
* to support central, non-thirdparty installations
*/
LIB_LIBS = \
+ -L$(METIS_ARCH_PATH)/lib \
-L$(METIS_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
-L$(FOAM_EXT_LIBBIN) \
-lmetis
--- OpenFOAM-v1612+.orig/src/parallel/decompose/ptscotchDecomp/Make/options 2017-03-21 16:34:34.607049385 +0100
+++ OpenFOAM-v1612+/src/parallel/decompose/ptscotchDecomp/Make/options 2017-03-21 16:30:00.479799399 +0100
@@ -16,6 +16,7 @@
* to support central, non-thirdparty installations
*/
LIB_LIBS = \
+ -L$(SCOTCH_ARCH_PATH)/lib \
-L$(SCOTCH_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
-L$(FOAM_EXT_LIBBIN) \
-L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) \
--- OpenFOAM-v1612+.orig/src/parallel/decompose/scotchDecomp/Make/options 2017-03-21 16:34:39.159036582 +0100
+++ OpenFOAM-v1612+/src/parallel/decompose/scotchDecomp/Make/options 2017-03-21 16:29:46.719836452 +0100
@@ -16,6 +16,7 @@
* to support central, non-thirdparty installations
*/
LIB_LIBS = \
+ -L$(SCOTCH_ARCH_PATH)/lib \
-L$(SCOTCH_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
-L$(FOAM_EXT_LIBBIN) \
-lscotch \

84
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@ -0,0 +1,84 @@
--- OpenFOAM-v1612+.orig/applications/utilities/mesh/manipulation/renumberMesh/Allwmake 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/applications/utilities/mesh/manipulation/renumberMesh/Allwmake 2017-03-28 11:13:35.222727218 +0200
@@ -4,20 +4,35 @@
# Parse arguments for compilation (at least for error catching)
. $WM_PROJECT_DIR/wmake/scripts/AllwmakeParseArguments
-export COMPILE_FLAGS=''
-export LINK_FLAGS=''
+unset COMP_FLAGS LINK_FLAGS
if [ -f "${FOAM_LIBBIN}/libSloanRenumber.so" ]
then
- echo "Found libSloanRenumber.so -- enabling Sloan renumbering support."
+ echo " found libSloanRenumber -- enabling sloan renumbering support."
export LINK_FLAGS="${LINK_FLAGS} -lSloanRenumber"
fi
-if [ -f "${ZOLTAN_ARCH_PATH}/lib/libzoltan.a" -a -f "${FOAM_LIBBIN}/libzoltanRenumber.so" ]
+if [ -f "${FOAM_LIBBIN}/libzoltanRenumber.so" ]
then
- echo "Found libzoltanRenumber.so -- enabling zoltan renumbering support."
- export COMPILE_FLAGS="-DFOAM_USE_ZOLTAN"
- export LINK_FLAGS="${LINK_FLAGS} -lzoltanRenumber -L${ZOLTAN_ARCH_PATH}/lib -lzoltan"
+ if [ -z "$ZOLTAN_ARCH_PATH" ]
+ then
+ # Optional: get ZOLTAN_ARCH_PATH
+ if settings=$($WM_PROJECT_DIR/bin/foamEtcFile config.sh/zoltan)
+ then
+ . $settings
+ fi
+ fi
+
+ for libdir in lib "lib${WM_COMPILER_LIB_ARCH}"
+ do
+ if [ -f "$ZOLTAN_ARCH_PATH/$libdir/libzoltan.a" ]
+ then
+ echo " found libzoltanRenumber -- enabling zoltan renumbering support."
+ export COMP_FLAGS="-DFOAM_USE_ZOLTAN"
+ export LINK_FLAGS="${LINK_FLAGS} -lzoltanRenumber -L$ZOLTAN_ARCH_PATH/$libdir -lzoltan"
+ break
+ fi
+ done
fi
wmake $targetType
--- OpenFOAM-v1612+.orig/src/renumber/Allwmake 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/src/renumber/Allwmake 2017-03-28 11:10:22.195543610 +0200
@@ -5,14 +5,11 @@
targetType=libso
. $WM_PROJECT_DIR/wmake/scripts/AllwmakeParseArguments
-## Get ZOLTAN_ARCH_PATH
-#if settings=$($WM_PROJECT_DIR/bin/foamEtcFile config.sh/zoltan)
-#then
-# . $settings
-# echo "using ZOLTAN_ARCH_PATH=$ZOLTAN_ARCH_PATH"
-#else
-# echo "Error: no config.sh/zoltan settings"
-#fi
+# Optional: get ZOLTAN_ARCH_PATH
+if settings=$($WM_PROJECT_DIR/bin/foamEtcFile config.sh/zoltan)
+then
+ . $settings
+fi
wmake $targetType renumberMethods
--- OpenFOAM-v1612+.orig/src/renumber/zoltanRenumber/Make/options 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/src/renumber/zoltanRenumber/Make/options 2017-03-28 11:50:46.484343848 +0200
@@ -4,10 +4,13 @@
EXE_INC = \
/* -DFULLDEBUG -g -O0 */ \
$(PFLAGS) $(PINC) \
+ ${c++LESSWARN} \
-I$(FOAM_SRC)/renumber/renumberMethods/lnInclude \
-I$(ZOLTAN_ARCH_PATH)/include/ \
-I$(LIB_SRC)/meshTools/lnInclude
LIB_LIBS = \
- /* -L$(ZOLTAN_ARCH_PATH)/lib -lzoltan */ \
+ -L$(ZOLTAN_ARCH_PATH)/lib \
+ -L$(ZOLTAN_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
+ -lzoltan \
-lmeshTools

25
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@ -0,0 +1,25 @@
--- OpenFOAM-4.x.orig/etc/bashrc 2016-10-16 16:11:45.000000000 +0200
+++ OpenFOAM-4.x/etc/bashrc 2017-03-24 12:41:25.233267894 +0100
@@ -43,17 +43,17 @@
# Please set to the appropriate path if the default is not correct.
#
[ $BASH_SOURCE ] && \
-export FOAM_INST_DIR=$(cd ${BASH_SOURCE%/*/*/*} && pwd -P) || \
-export FOAM_INST_DIR=$HOME/$WM_PROJECT
-# export FOAM_INST_DIR=~$WM_PROJECT
-# export FOAM_INST_DIR=/opt/$WM_PROJECT
-# export FOAM_INST_DIR=/usr/local/$WM_PROJECT
+FOAM_INST_DIR=$(\cd $(dirname $BASH_SOURCE)/../.. && \pwd -P) || \
+FOAM_INST_DIR=$HOME/$WM_PROJECT
+# FOAM_INST_DIR=/opt/$WM_PROJECT
+# FOAM_INST_DIR=/usr/local/$WM_PROJECT
#
# Build foamyHexMesh
export FOAMY_HEX_MESH=yes
#
# END OF (NORMAL) USER EDITABLE PART
################################################################################
+export FOAM_INST_DIR
# The default environment variables below can be overridden in a prefs.sh file
# located in ~/.OpenFOAM/$WM_PROJECT_VERSION, ~/.OpenFOAM,

42
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@ -0,0 +1,42 @@
diff -uw OpenFOAM-v1612+.orig/etc/config.sh/settings OpenFOAM-v1612+/etc/config.sh/settings
--- OpenFOAM-v1612+.orig/etc/config.sh/settings 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/etc/config.sh/settings 2017-03-23 12:22:52.002101020 +0100
@@ -141,7 +141,7 @@
#------------------------------------------------------------------------------
# Location of the jobControl directory
-export FOAM_JOB_DIR=$WM_PROJECT_INST_DIR/jobControl
+export FOAM_JOB_DIR=$HOME/$WM_PROJECT/jobControl #SPACK: non-central location
# wmake configuration
export WM_DIR=$WM_PROJECT_DIR/wmake
@@ -157,7 +157,7 @@
export FOAM_EXT_LIBBIN=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/lib
# Site-specific directory
-siteDir="${WM_PROJECT_SITE:-$WM_PROJECT_INST_DIR/site}"
+siteDir="${WM_PROJECT_SITE:-$WM_PROJECT/site}" #SPACK: not in parent directory
# Shared site executables/libraries
# Similar naming convention as ~OpenFOAM expansion
diff -uw OpenFOAM-v1612+.orig/etc/config.csh/settings OpenFOAM-v1612+/etc/config.csh/settings
--- OpenFOAM-v1612+.orig/etc/config.csh/settings 2016-12-23 15:22:59.000000000 +0100
+++ OpenFOAM-v1612+/etc/config.csh/settings 2017-03-23 12:23:52.737891912 +0100
@@ -137,7 +137,7 @@
#------------------------------------------------------------------------------
# Location of the jobControl directory
-setenv FOAM_JOB_DIR $WM_PROJECT_INST_DIR/jobControl
+setenv FOAM_JOB_DIR=$HOME/$WM_PROJECT/jobControl #SPACK: non-central location
# wmake configuration
setenv WM_DIR $WM_PROJECT_DIR/wmake
@@ -156,7 +156,7 @@
if ( $?WM_PROJECT_SITE ) then
set siteDir=$WM_PROJECT_SITE
else
- set siteDir=$WM_PROJECT_INST_DIR/site
+ set siteDir=$WM_PROJECT_DIR/site #SPACK: not in parent directory
endif
# Shared site executables/libraries

492
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@ -0,0 +1,492 @@
##############################################################################
# Copyright (c) 2017 Mark Olesen, OpenCFD Ltd.
#
# This file was authored by Mark Olesen <mark.olesen@esi-group.com>
# and is released as part of spack under the LGPL license.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for the LLNL notice and the LGPL.
#
# License
# -------
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# Legal Notice
# ------------
# OPENFOAM is a trademark owned by OpenCFD Ltd
# (producer and distributor of the OpenFOAM software via www.openfoam.com).
# The trademark information must remain visible and unadulterated in this
# file and via the "spack info" and comply with the term set by
# http://openfoam.com/legal/trademark-policy.php
#
# This file is not part of OpenFOAM, nor does it constitute a component of an
# OpenFOAM distribution.
#
##############################################################################
#
# Notes
# - The openfoam-org package is a modified version of the openfoam-com package.
# If changes are needed here, consider if they should also be applied there.
#
# - Building with boost/cgal is not included, since some of the logic is not
# entirely clear and thus untested.
# - Resolution of flex, zlib needs more attention (within OpenFOAM)
#
# - mpi handling: WM_MPLIB=SYSTEMMPI and use spack to populate the prefs.sh
# for it.
# Also provide wmake rules for special purpose 'USER' and 'USERMPI'
# mpi implementations, in case these are required.
#
##############################################################################
from spack import *
from spack.environment import *
import llnl.util.tty as tty
import multiprocessing
import glob
import re
import shutil
import os
from os.path import isdir, isfile
from spack.pkg.builtin.openfoam_com import *
class OpenfoamOrg(Package):
"""OpenFOAM is a GPL-opensource C++ CFD-toolbox.
The openfoam.org release is managed by the OpenFOAM Foundation Ltd as
a licensee of the OPENFOAM trademark.
This offering is not approved or endorsed by OpenCFD Ltd,
producer and distributor of the OpenFOAM software via www.openfoam.com,
and owner of the OPENFOAM trademark.
"""
homepage = "http://www.openfoam.org/"
baseurl = "https://github.com/OpenFOAM"
url = "https://github.com/OpenFOAM/OpenFOAM-4.x/archive/version-4.1.tar.gz"
version('4.1', '318a446c4ae6366c7296b61184acd37c',
url=baseurl + '/OpenFOAM-4.x/archive/version-4.1.tar.gz')
variant('int64', default=False,
description='Compile with 64-bit labels')
variant('float32', default=False,
description='Compile with 32-bit scalar (single-precision)')
variant('source', default=True,
description='Install library/application sources and tutorials')
#: Map spack compiler names to OpenFOAM compiler names
# By default, simply capitalize the first letter
compiler_mapping = {'intel': 'icc'}
provides('openfoam')
depends_on('mpi')
depends_on('zlib')
depends_on('flex@:2.6.1') # <- restriction due to scotch
depends_on('cmake', type='build')
# Require scotch with ptscotch - corresponds to standard OpenFOAM setup
depends_on('scotch~int64+mpi', when='~int64')
depends_on('scotch+int64+mpi', when='+int64')
# General patches
patch('openfoam-site.patch')
# Version-specific patches
patch('openfoam-etc-41.patch')
# Some user settings, to be adjusted manually or via variants
foam_cfg = {
'WM_COMPILER': 'Gcc', # <- %compiler
'WM_ARCH_OPTION': '64', # (32/64-bit on x86_64)
'WM_LABEL_SIZE': '32', # <- +int64
'WM_PRECISION_OPTION': 'DP', # <- +float32
'WM_COMPILE_OPTION': 'SPACKOpt', # Do not change
'WM_MPLIB': 'SYSTEMMPI', # Use system mpi for spack
}
# The system description is frequently needed
foam_sys = {
'WM_ARCH': None,
'WM_COMPILER': None,
'WM_OPTIONS': None,
}
# Content for etc/prefs.{csh,sh}
etc_prefs = {}
# Content for etc/config.{csh,sh}/ files
etc_config = {}
build_script = './spack-Allwmake' # <- Generated by patch() method.
# phases = ['configure', 'build', 'install']
# build_system_class = 'OpenfoamCom'
# Add symlinks into bin/, lib/ (eg, for other applications)
extra_symlinks = False
def setup_environment(self, spack_env, run_env):
run_env.set('WM_PROJECT_DIR', self.projectdir)
@property
def _canonical(self):
"""Canonical name for this package and version"""
return 'OpenFOAM-{0}'.format(self.version)
@property
def projectdir(self):
"""Absolute location of project directory: WM_PROJECT_DIR/"""
return join_path(self.prefix, self._canonical) # <- prefix/canonical
@property
def etc(self):
"""Absolute location of the OpenFOAM etc/ directory"""
return join_path(self.projectdir, 'etc')
@property
def archbin(self):
"""Relative location of architecture-specific executables"""
return join_path('platforms', self.wm_options, 'bin')
@property
def archlib(self):
"""Relative location of architecture-specific libraries"""
return join_path('platforms', self.wm_options, 'lib')
@property
def wm_options(self):
"""The architecture+compiler+options for OpenFOAM"""
opts = self.set_openfoam()
return opts
@property
def rpath_info(self):
"""Define 'SPACKOpt' compiler optimization file to have wmake
use spack information with minimum modifications to OpenFOAM
"""
build_libpath = join_path(self.stage.source_path, self.archlib)
install_libpath = join_path(self.projectdir, self.archlib)
# 'DBUG': rpaths
return '{0}{1} {2}{3}'.format(
self.compiler.cxx_rpath_arg, install_libpath,
self.compiler.cxx_rpath_arg, build_libpath)
def openfoam_arch(self):
"""Return an architecture value similar to what OpenFOAM does in
etc/config.sh/settings, but slightly more generous.
Uses and may adjust foam_cfg[WM_ARCH_OPTION] as a side-effect
"""
# spec.architecture.platform is like `uname -s`, but lower-case
platform = self.spec.architecture.platform
# spec.architecture.target is like `uname -m`
target = self.spec.architecture.target
if platform == 'linux':
if target == 'i686':
self.foam_cfg['WM_ARCH_OPTION'] = '32' # Force consistency
elif target == 'x86_64':
if self.foam_cfg['WM_ARCH_OPTION'] == '64':
platform += '64'
elif target == 'ia64':
platform += 'ia64'
elif target == 'armv7l':
platform += 'ARM7'
elif target == ppc64:
platform += 'PPC64'
elif target == ppc64le:
platform += 'PPC64le'
elif platform == 'darwin':
if target == 'x86_64':
platform += 'Intel'
if self.foam_cfg['WM_ARCH_OPTION'] == '64':
platform += '64'
# ... and others?
return platform
def openfoam_compiler(self):
"""Capitalized version of the compiler name, which usually corresponds
to how OpenFOAM will camel-case things.
Use compiler_mapping to handing special cases.
Also handle special compiler options (eg, KNL)
"""
comp = self.compiler.name
if comp in self.compiler_mapping:
comp = self.compiler_mapping[comp]
comp = comp.capitalize()
if '+knl' in self.spec:
comp += 'KNL'
return comp
def set_openfoam(self):
"""Populate foam_cfg, foam_sys according to
variants, architecture, compiler.
Returns WM_OPTIONS.
"""
# Run once
opts = self.foam_sys['WM_OPTIONS']
if opts:
return opts
wm_arch = self.openfoam_arch()
wm_compiler = self.openfoam_compiler()
compileOpt = self.foam_cfg['WM_COMPILE_OPTION']
# Insist on a wmake rule for this architecture/compiler combination
archCompiler = wm_arch + wm_compiler
compiler_rule = join_path(
self.stage.source_path, 'wmake', 'rules', archCompiler)
if not isdir(compiler_rule):
raise RuntimeError(
'No wmake rule for {0}'.format(archCompiler))
if not re.match(r'.+Opt$', compileOpt):
raise RuntimeError(
"WM_COMPILE_OPTION={0} is not type '*Opt'".format(compileOpt))
# Adjust for variants
self.foam_cfg['WM_LABEL_SIZE'] = (
'64' if '+int64' in self.spec else '32'
)
self.foam_cfg['WM_PRECISION_OPTION'] = (
'SP' if '+float32' in self.spec else 'DP'
)
# ----
# WM_LABEL_OPTION=Int$WM_LABEL_SIZE
# WM_OPTIONS=$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION$WM_COMPILE_OPTION
# ----
self.foam_sys['WM_ARCH'] = wm_arch
self.foam_sys['WM_COMPILER'] = wm_compiler
self.foam_cfg['WM_COMPILER'] = wm_compiler # For bashrc,cshrc too
self.foam_sys['WM_OPTIONS'] = ''.join([
wm_arch,
wm_compiler,
self.foam_cfg['WM_PRECISION_OPTION'],
'Int', self.foam_cfg['WM_LABEL_SIZE'], # Int32/Int64
compileOpt
])
return self.foam_sys['WM_OPTIONS']
def patch(self):
"""Adjust OpenFOAM build for spack. Where needed, apply filter as an
alternative to normal patching.
"""
self.set_openfoam() # May need foam_cfg/foam_sys information
# This is fairly horrible.
# The github tarfiles have weird names that do not correspond to the
# canonical name. We need to rename these, but leave a symlink for
# spack to work with.
#
# Note that this particular OpenFOAM release requires absolute
# directories to build correctly!
parent = os.path.dirname(self.stage.source_path)
original = os.path.basename(self.stage.source_path)
target = self._canonical
with working_dir(parent):
if original != target and not os.path.lexists(target):
os.rename(original, target)
os.symlink(target, original)
tty.info('renamed {0} -> {1}'.format(original, target))
# Avoid WM_PROJECT_INST_DIR for ThirdParty, site or jobControl.
# Use openfoam-site.patch to handle jobControl, site.
#
# Filter (not patch) bashrc,cshrc for additional flexibility
wm_setting = {
'WM_THIRD_PARTY_DIR':
r'$WM_PROJECT_DIR/ThirdParty #SPACK: No separate third-party',
'WM_VERSION': self.version, # consistency
'FOAMY_HEX_MESH': '', # This is horrible (unset variable?)
}
rewrite_environ_files( # Adjust etc/bashrc and etc/cshrc
wm_setting,
posix=join_path('etc', 'bashrc'),
cshell=join_path('etc', 'cshrc'))
# Build wrapper script
with open(self.build_script, 'w') as out:
out.write(
"""#!/bin/bash
. $PWD/etc/bashrc '' # No arguments
mkdir -p $FOAM_APPBIN $FOAM_LIBBIN 2>/dev/null # Allow interrupt
echo Build openfoam with SPACK
echo WM_PROJECT_DIR = $WM_PROJECT_DIR
./Allwmake $@
#
""")
set_executable(self.build_script)
self.configure(self.spec, self.prefix) # Should be a separate phase
def configure(self, spec, prefix):
"""Make adjustments to the OpenFOAM configuration files in their various
locations: etc/bashrc, etc/config.sh/FEATURE and customizations that
don't properly fit get placed in the etc/prefs.sh file (similiarly for
csh).
"""
self.set_openfoam() # Need foam_cfg/foam_sys information
# Some settings for filtering bashrc, cshrc
wm_setting = {}
wm_setting.update(self.foam_cfg)
rewrite_environ_files( # Adjust etc/bashrc and etc/cshrc
wm_setting,
posix=join_path('etc', 'bashrc'),
cshell=join_path('etc', 'cshrc'))
# MPI content, with absolute paths
content = mplib_content(spec)
# Content for etc/prefs.{csh,sh}
self.etc_prefs = {
r'MPI_ROOT': spec['mpi'].prefix, # Absolute
r'MPI_ARCH_FLAGS': '"%s"' % content['FLAGS'],
r'MPI_ARCH_INC': '"%s"' % content['PINC'],
r'MPI_ARCH_LIBS': '"%s"' % content['PLIBS'],
}
# Content for etc/config.{csh,sh}/ files
self.etc_config = {
'CGAL': {},
'scotch': {},
'metis': {},
'paraview': [],
}
if True:
self.etc_config['scotch'] = {
'SCOTCH_ARCH_PATH': spec['scotch'].prefix,
# For src/parallel/decompose/Allwmake
'SCOTCH_VERSION': 'scotch-{0}'.format(spec['scotch'].version),
}
# Write prefs files according to the configuration.
# Only need prefs.sh for building, but install both for end-users
if self.etc_prefs:
write_environ(
self.etc_prefs,
posix=join_path('etc', 'prefs.sh'),
cshell=join_path('etc', 'prefs.csh'))
# Adjust components to use SPACK variants
for component, subdict in self.etc_config.iteritems():
write_environ(
subdict,
posix=join_path('etc', 'config.sh', component),
cshell=join_path('etc', 'config.csh', component))
archCompiler = self.foam_sys['WM_ARCH'] + self.foam_sys['WM_COMPILER']
compileOpt = self.foam_cfg['WM_COMPILE_OPTION']
general_rule = join_path('wmake', 'rules', 'General')
compiler_rule = join_path('wmake', 'rules', archCompiler)
generate_mplib_rules(general_rule, self.spec)
generate_compiler_rules(compiler_rule, compileOpt, self.rpath_info)
# Record the spack spec information
with open("log.spack-spec", 'w') as outfile:
outfile.write(spec.tree())
def build(self, spec, prefix):
"""Build using the OpenFOAM Allwmake script, with a wrapper to source
its environment first.
"""
self.set_openfoam() # Force proper population of foam_cfg/foam_sys
args = []
if self.parallel: # Build in parallel? - pass via the environment
os.environ['WM_NCOMPPROCS'] = str(self.make_jobs) \
if self.make_jobs else str(multiprocessing.cpu_count())
builder = Executable(self.build_script)
builder(*args)
def install(self, spec, prefix):
"""Install under the projectdir (== prefix/name-version)"""
self.build(spec, prefix) # Should be a separate phase
opts = self.wm_options
mkdirp(self.projectdir)
projdir = os.path.basename(self.projectdir)
wm_setting = {
'WM_PROJECT_INST_DIR': os.path.dirname(self.projectdir),
'WM_PROJECT_DIR': join_path('$WM_PROJECT_INST_DIR', projdir),
}
# Retain build log file
out = "spack-build.out"
if isfile(out):
install(out, join_path(self.projectdir, "log." + opts))
# All top-level files, except spack build info and possibly Allwmake
if '+source' in spec:
ignored = re.compile(r'^spack-.*')
else:
ignored = re.compile(r'^(Allwmake|spack-).*')
files = [
f for f in glob.glob("*") if isfile(f) and not ignored.search(f)
]
for f in files:
install(f, self.projectdir)
# Having wmake without sources is actually somewhat pointless...
dirs = ['bin', 'etc', 'wmake']
if '+source' in spec:
dirs.extend(['applications', 'src', 'tutorials'])
for d in dirs:
install_tree(
d,
join_path(self.projectdir, d))
dirs = ['platforms']
if '+source' in spec:
dirs.extend(['doc'])
# Install platforms (and doc) skipping intermediate targets
ignored = ['src', 'applications', 'html', 'Guides']
for d in dirs:
install_tree(
d,
join_path(self.projectdir, d),
ignore=shutil.ignore_patterns(*ignored))
rewrite_environ_files( # Adjust etc/bashrc and etc/cshrc
wm_setting,
posix=join_path(self.etc, 'bashrc'),
cshell=join_path(self.etc, 'cshrc'))
self.install_links()
def install_links(self):
"""Add symlinks into bin/, lib/ (eg, for other applications)"""
if not self.extra_symlinks:
return
# ln -s platforms/linux64GccXXX/lib lib
with working_dir(self.projectdir):
if isdir(self.archlib):
os.symlink(self.archlib, 'lib')
# (cd bin && ln -s ../platforms/linux64GccXXX/bin/* .)
with working_dir(join_path(self.projectdir, 'bin')):
for f in [
f for f in glob.glob(join_path('..', self.archbin, "*"))
if isfile(f)
]:
os.symlink(f, os.path.basename(f))
# -----------------------------------------------------------------------------