New version of Arbor package (#31660)
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Brent Huisman
GitHub
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09a945d924
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9ec05f045f
@ -10,76 +10,102 @@ class Arbor(CMakePackage, CudaPackage):
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"""Arbor is a high-performance library for computational neuroscience
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simulations."""
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homepage = 'https://arbor-sim.org'
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git = 'https://github.com/arbor-sim/arbor.git'
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url = 'https://github.com/arbor-sim/arbor/releases/download/v0.6/arbor-v0.6-full.tar.gz'
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maintainers = ['bcumming', 'brenthuisman', 'haampie', 'schmitts']
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homepage = "https://arbor-sim.org"
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git = "https://github.com/arbor-sim/arbor.git"
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url = "https://github.com/arbor-sim/arbor/releases/download/v0.7/arbor-v0.7-full.tar.gz"
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maintainers = ["bcumming", "brenthuisman", "haampie", "schmitts"]
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version('master', branch='master', submodules=True)
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version('0.6', sha256='4cd333b18effc8833428ddc0b99e7dc976804771bc85da90034c272c7019e1e8', url='https://github.com/arbor-sim/arbor/releases/download/v0.6/arbor-v0.6-full.tar.gz')
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version('0.5.2', sha256='290e2ad8ca8050db1791cabb6b431e7c0409c305af31b559e397e26b300a115d', url='https://github.com/arbor-sim/arbor/releases/download/v0.5.2/arbor-v0.5.2-full.tar.gz')
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version('0.5', sha256='d0c8a4c7f97565d7c30493c66249be794d1dc424de266fc79cecbbf0e313df59', url='https://github.com/arbor-sim/arbor/releases/download/v0.5/arbor-v0.5-full.tar.gz')
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version("master", branch="master", submodules=True)
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version(
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"0.7",
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sha256="c3a6b7193946aee882bb85f9c38beac74209842ee94e80840968997ba3b84543",
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url="https://github.com/arbor-sim/arbor/releases/download/v0.7/arbor-v0.7-full.tar.gz",
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)
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version(
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"0.6",
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sha256="4cd333b18effc8833428ddc0b99e7dc976804771bc85da90034c272c7019e1e8",
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url="https://github.com/arbor-sim/arbor/releases/download/v0.6/arbor-v0.6-full.tar.gz",
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)
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version(
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"0.5.2",
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sha256="290e2ad8ca8050db1791cabb6b431e7c0409c305af31b559e397e26b300a115d",
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url="https://github.com/arbor-sim/arbor/releases/download/v0.5.2/arbor-v0.5.2-full.tar.gz",
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)
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version(
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"0.5",
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sha256="d0c8a4c7f97565d7c30493c66249be794d1dc424de266fc79cecbbf0e313df59",
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url="https://github.com/arbor-sim/arbor/releases/download/v0.5/arbor-v0.5-full.tar.gz",
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)
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variant('assertions', default=False, description='Enable arb_assert() assertions in code.')
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variant('doc', default=False, description='Build documentation.')
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variant('mpi', default=False, description='Enable MPI support')
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variant('neuroml', default=True, description='Build NeuroML support library.')
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variant('python', default=True, description='Enable Python frontend support')
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variant('vectorize', default=False, description='Enable vectorization of computational kernels')
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variant(
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"assertions",
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default=False,
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description="Enable arb_assert() assertions in code.",
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)
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variant("doc", default=False, description="Build documentation.")
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variant("mpi", default=False, description="Enable MPI support")
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variant("neuroml", default=True, description="Build NeuroML support library.")
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variant("python", default=True, description="Enable Python frontend support")
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variant(
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"vectorize",
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default=False,
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description="Enable vectorization of computational kernels",
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)
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# https://docs.arbor-sim.org/en/latest/install/build_install.html?highlight=requirements#compilers
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conflicts('%gcc@:8.3')
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conflicts('%clang@:7')
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# https://docs.arbor-sim.org/en/latest/install/build_install.html#compilers
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conflicts("%gcc@:8.3")
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conflicts("%clang@:7")
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# Cray compiler v9.2 and later is Clang-based.
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conflicts('%cce@:9.1')
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conflicts('%intel')
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conflicts("%cce@:9.1")
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conflicts("%intel")
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depends_on('cmake@3.12:', type='build')
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depends_on("cmake@3.12:", type="build")
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# misc dependencies
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depends_on('fmt@7.1:', when='@0.5.3:') # required by the modcc compiler
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depends_on('nlohmann-json')
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depends_on('cuda@10:', when='+cuda')
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depends_on('libxml2', when='+neuroml')
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depends_on("fmt@7.1:", when="@0.5.3:") # required by the modcc compiler
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depends_on("nlohmann-json")
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depends_on("random123")
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depends_on("cuda@10:", when="+cuda")
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depends_on("libxml2", when="+neuroml")
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# mpi
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depends_on('mpi', when='+mpi')
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depends_on('py-mpi4py', when='+mpi+python', type=('build', 'run'))
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depends_on("mpi", when="+mpi")
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depends_on("py-mpi4py", when="+mpi+python", type=("build", "run"))
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# python (bindings)
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extends('python', when='+python')
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depends_on('python@3.6:', when="+python", type=('build', 'run'))
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depends_on('py-numpy', when='+python', type=('build', 'run'))
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with when('+python'):
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depends_on('py-pybind11@2.6:', type=('build', 'run'))
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depends_on('py-pybind11@2.8.1:', when='@0.5.3:', type=('build', 'run'))
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extends("python", when="+python")
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depends_on("python@3.7:", when="+python", type=("build", "run"))
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depends_on("py-numpy", when="+python", type=("build", "run"))
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with when("+python"):
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depends_on("py-pybind11@2.6:", type=("build"))
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depends_on("py-pybind11@2.8.1:", when="@0.5.3:", type=("build"))
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# sphinx based documentation
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depends_on('python@3.6:', when="+doc", type='build')
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depends_on('py-sphinx', when="+doc", type='build')
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depends_on('py-svgwrite', when='+doc', type='build')
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depends_on("python@3.7:", when="+doc", type="build")
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depends_on("py-sphinx", when="+doc", type="build")
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depends_on("py-svgwrite", when="+doc", type="build")
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@property
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def build_targets(self):
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return ['all', 'html'] if '+doc' in self.spec else ['all']
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return ["all", "html"] if "+doc" in self.spec else ["all"]
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def cmake_args(self):
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args = [
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self.define_from_variant('ARB_WITH_ASSERTIONS', 'assertions'),
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self.define_from_variant('ARB_WITH_MPI', 'mpi'),
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self.define_from_variant('ARB_WITH_NEUROML', 'neuroml'),
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self.define_from_variant('ARB_WITH_PYTHON', 'python'),
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self.define_from_variant('ARB_VECTORIZE', 'vectorize'),
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self.define_from_variant("ARB_WITH_ASSERTIONS", "assertions"),
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self.define_from_variant("ARB_WITH_MPI", "mpi"),
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self.define_from_variant("ARB_WITH_NEUROML", "neuroml"),
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self.define_from_variant("ARB_WITH_PYTHON", "python"),
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self.define_from_variant("ARB_VECTORIZE", "vectorize"),
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]
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if '+cuda' in self.spec:
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args.append('-DARB_GPU=cuda')
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if "+cuda" in self.spec:
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args.append("-DARB_GPU=cuda")
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# query spack for the architecture-specific compiler flags set by its wrapper
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args.append('-DARB_ARCH=none')
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args.append("-DARB_ARCH=none")
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opt_flags = self.spec.target.optimization_flags(
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self.spec.compiler.name,
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self.spec.compiler.version)
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args.append('-DARB_CXX_FLAGS_TARGET=' + opt_flags)
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self.spec.compiler.name, self.spec.compiler.version
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)
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args.append("-DARB_CXX_FLAGS_TARGET=" + opt_flags)
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return args
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