zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

New version of Arbor package (#31660)

Browse Source
This commit is contained in:
Brent Huisman 2022-07-28 13:11:51 +02:00 committed by GitHub
parent 09a945d924
commit 9ec05f045f
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 73 additions and 47 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

120
var/spack/repos/builtin/packages/arbor/package.py
View File

@ -10,76 +10,102 @@ class Arbor(CMakePackage, CudaPackage):
"""Arbor is a high-performance library for computational neuroscience """Arbor is a high-performance library for computational neuroscience
simulations.""" simulations."""
homepage = 'https://arbor-sim.org' homepage = "https://arbor-sim.org"
git = 'https://github.com/arbor-sim/arbor.git' git = "https://github.com/arbor-sim/arbor.git"
url = 'https://github.com/arbor-sim/arbor/releases/download/v0.6/arbor-v0.6-full.tar.gz' url = "https://github.com/arbor-sim/arbor/releases/download/v0.7/arbor-v0.7-full.tar.gz"
maintainers = ['bcumming', 'brenthuisman', 'haampie', 'schmitts'] maintainers = ["bcumming", "brenthuisman", "haampie", "schmitts"]
version('master', branch='master', submodules=True) version("master", branch="master", submodules=True)
version('0.6', sha256='4cd333b18effc8833428ddc0b99e7dc976804771bc85da90034c272c7019e1e8', url='https://github.com/arbor-sim/arbor/releases/download/v0.6/arbor-v0.6-full.tar.gz') version(
version('0.5.2', sha256='290e2ad8ca8050db1791cabb6b431e7c0409c305af31b559e397e26b300a115d', url='https://github.com/arbor-sim/arbor/releases/download/v0.5.2/arbor-v0.5.2-full.tar.gz') "0.7",
version('0.5', sha256='d0c8a4c7f97565d7c30493c66249be794d1dc424de266fc79cecbbf0e313df59', url='https://github.com/arbor-sim/arbor/releases/download/v0.5/arbor-v0.5-full.tar.gz') sha256="c3a6b7193946aee882bb85f9c38beac74209842ee94e80840968997ba3b84543",
url="https://github.com/arbor-sim/arbor/releases/download/v0.7/arbor-v0.7-full.tar.gz",
)
version(
"0.6",
sha256="4cd333b18effc8833428ddc0b99e7dc976804771bc85da90034c272c7019e1e8",
url="https://github.com/arbor-sim/arbor/releases/download/v0.6/arbor-v0.6-full.tar.gz",
)
version(
"0.5.2",
sha256="290e2ad8ca8050db1791cabb6b431e7c0409c305af31b559e397e26b300a115d",
url="https://github.com/arbor-sim/arbor/releases/download/v0.5.2/arbor-v0.5.2-full.tar.gz",
)
version(
"0.5",
sha256="d0c8a4c7f97565d7c30493c66249be794d1dc424de266fc79cecbbf0e313df59",
url="https://github.com/arbor-sim/arbor/releases/download/v0.5/arbor-v0.5-full.tar.gz",
)
variant('assertions', default=False, description='Enable arb_assert() assertions in code.') variant(
variant('doc', default=False, description='Build documentation.') "assertions",
variant('mpi', default=False, description='Enable MPI support') default=False,
variant('neuroml', default=True, description='Build NeuroML support library.') description="Enable arb_assert() assertions in code.",
variant('python', default=True, description='Enable Python frontend support') )
variant('vectorize', default=False, description='Enable vectorization of computational kernels') variant("doc", default=False, description="Build documentation.")
variant("mpi", default=False, description="Enable MPI support")
variant("neuroml", default=True, description="Build NeuroML support library.")
variant("python", default=True, description="Enable Python frontend support")
variant(
"vectorize",
default=False,
description="Enable vectorization of computational kernels",
)
# https://docs.arbor-sim.org/en/latest/install/build_install.html?highlight=requirements#compilers # https://docs.arbor-sim.org/en/latest/install/build_install.html#compilers
conflicts('%gcc@:8.3') conflicts("%gcc@:8.3")
conflicts('%clang@:7') conflicts("%clang@:7")
# Cray compiler v9.2 and later is Clang-based. # Cray compiler v9.2 and later is Clang-based.
conflicts('%cce@:9.1') conflicts("%cce@:9.1")
conflicts('%intel') conflicts("%intel")
depends_on('cmake@3.12:', type='build') depends_on("cmake@3.12:", type="build")
# misc dependencies # misc dependencies
depends_on('fmt@7.1:', when='@0.5.3:') # required by the modcc compiler depends_on("fmt@7.1:", when="@0.5.3:") # required by the modcc compiler
depends_on('nlohmann-json') depends_on("nlohmann-json")
depends_on('cuda@10:', when='+cuda') depends_on("random123")
depends_on('libxml2', when='+neuroml') depends_on("cuda@10:", when="+cuda")
depends_on("libxml2", when="+neuroml")
# mpi # mpi
depends_on('mpi', when='+mpi') depends_on("mpi", when="+mpi")
depends_on('py-mpi4py', when='+mpi+python', type=('build', 'run')) depends_on("py-mpi4py", when="+mpi+python", type=("build", "run"))
# python (bindings) # python (bindings)
extends('python', when='+python') extends("python", when="+python")
depends_on('python@3.6:', when="+python", type=('build', 'run')) depends_on("python@3.7:", when="+python", type=("build", "run"))
depends_on('py-numpy', when='+python', type=('build', 'run')) depends_on("py-numpy", when="+python", type=("build", "run"))
with when('+python'): with when("+python"):
depends_on('py-pybind11@2.6:', type=('build', 'run')) depends_on("py-pybind11@2.6:", type=("build"))
depends_on('py-pybind11@2.8.1:', when='@0.5.3:', type=('build', 'run')) depends_on("py-pybind11@2.8.1:", when="@0.5.3:", type=("build"))
# sphinx based documentation # sphinx based documentation
depends_on('python@3.6:', when="+doc", type='build') depends_on("python@3.7:", when="+doc", type="build")
depends_on('py-sphinx', when="+doc", type='build') depends_on("py-sphinx", when="+doc", type="build")
depends_on('py-svgwrite', when='+doc', type='build') depends_on("py-svgwrite", when="+doc", type="build")
@property @property
def build_targets(self): def build_targets(self):
return ['all', 'html'] if '+doc' in self.spec else ['all'] return ["all", "html"] if "+doc" in self.spec else ["all"]
def cmake_args(self): def cmake_args(self):
args = [ args = [
self.define_from_variant('ARB_WITH_ASSERTIONS', 'assertions'), self.define_from_variant("ARB_WITH_ASSERTIONS", "assertions"),
self.define_from_variant('ARB_WITH_MPI', 'mpi'), self.define_from_variant("ARB_WITH_MPI", "mpi"),
self.define_from_variant('ARB_WITH_NEUROML', 'neuroml'), self.define_from_variant("ARB_WITH_NEUROML", "neuroml"),
self.define_from_variant('ARB_WITH_PYTHON', 'python'), self.define_from_variant("ARB_WITH_PYTHON", "python"),
self.define_from_variant('ARB_VECTORIZE', 'vectorize'), self.define_from_variant("ARB_VECTORIZE", "vectorize"),
] ]
if '+cuda' in self.spec: if "+cuda" in self.spec:
args.append('-DARB_GPU=cuda') args.append("-DARB_GPU=cuda")
# query spack for the architecture-specific compiler flags set by its wrapper # query spack for the architecture-specific compiler flags set by its wrapper
args.append('-DARB_ARCH=none') args.append("-DARB_ARCH=none")
opt_flags = self.spec.target.optimization_flags( opt_flags = self.spec.target.optimization_flags(
self.spec.compiler.name, self.spec.compiler.name, self.spec.compiler.version
self.spec.compiler.version) )
args.append('-DARB_CXX_FLAGS_TARGET=' + opt_flags) args.append("-DARB_CXX_FLAGS_TARGET=" + opt_flags)
return args return args