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biobambam2: new package at v2.0.177 (#20392)

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takanori-ihara 2020-12-18 01:47:01 +09:00 committed by GitHub
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var/spack/repos/builtin/packages/biobambam2/package.py Normal file
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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Biobambam2(AutotoolsPackage):
"""Tools for early stage alignment file processing"""
homepage = "https://gitlab.com/german.tischler/biobambam2"
url = "https://gitlab.com/german.tischler/biobambam2/-/archive/2.0.177-release-20201112105453/biobambam2-2.0.177-release-20201112105453.tar.gz"
version('2.0.177', sha256='ad0a418fb49a31996a105a1a275c0d1dfc8b84aa91d48fa1efb6ff4fe1e74181',
url='https://gitlab.com/german.tischler/biobambam2/-/archive/2.0.177-release-20201112105453/biobambam2-2.0.177-release-20201112105453.tar.gz')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('m4', type='build')
depends_on('libmaus2')
def configure_args(self):
args = ['--with-libmaus2={0}'.format(self.spec['libmaus2'].prefix)]
return args