zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

py-crispresso: Create new package (#7990)

Browse Source 
* py-crispresso: Create new package

* py-crispresso: Create new package
This commit is contained in:
Eric
2018-05-03 13:09:59 -05:00
committed by Adam J. Stewart
parent 7846dfa817
commit a128fa88c5
1 changed files with 46 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

46
var/spack/repos/builtin/packages/py-crispresso/package.py Normal file
View File

@@ -0,0 +1,46 @@
##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PyCrispresso(PythonPackage):
"""Software pipeline for the analysis of CRISPR-Cas9 genome editing
outcomes from deep sequencing data."""
homepage = "https://github.com/lucapinello/CRISPResso"
url = "https://pypi.io/packages/source/C/CRISPResso/CRISPResso-1.0.8.tar.gz"
version('1.0.8', '2f9b52fe62cf49012a9525845f4aea45')
depends_on('py-setuptools', type='build')
depends_on('python@2.7.0:2.7.999', type=('build', 'run'))
depends_on('py-biopython@1.6.5:', type=('build', 'run'))
depends_on('py-matplotlib@1.3.1:', type=('build', 'run'))
depends_on('py-numpy@1.9:', type=('build', 'run'))
depends_on('py-pandas@0.15:', type=('build', 'run'))
depends_on('py-seaborn@0.7.1:', type=('build', 'run'))
depends_on('emboss@6:', type=('build', 'run'))
depends_on('flash', type=('build', 'run'))
depends_on('java', type=('build', 'run'))