add MoFEM packages (#8700)

* add mofem-cephas package * add mofem fracture module * add user modules build and fracture modyle * add minimal surface module * add slepc variant * bump mofem core lib version * bump mofem core lib version * bump version * fix bug * set upper bound to petsc version and other chanes * fix indentation * add minimal med file installation * chcekc with flake8 and installation with spack packages * add variants to med package * upper bound to adol-c and remove obsolete internal package install * fix basic module install * module install from external source in extended prefix * remove obsolte code and reverse to variant doxygen * fix git adress * improve packaging for mofem users modules * fix flake8 * move dependencies after variants * move root_cmakelists_dir right before cmake_args * remove unused variants * use append for single element * replace root_cmakelists_dir * use install_tree instead copy tree * simplify code * remove phase and mkdirp * add run tests * instal ext modules to ext_users_modules directory * move version below url * simplify directory name * use underscore in variant name * remove unused variable * fix link to blas libs * add missing boost dependence * fix problem with copying module source code * change variant name form doxygen to docs * add expanded description * make installation consistent with spack * fix flake8 * make extensions installed * code comments and minor corrections * make slepc variant false by default
2018-07-22 21:26:30 +01:00
parent a1d6909864
commit a18a642074
6 changed files with 456 additions and 0 deletions
--- a/var/spack/repos/builtin/packages/mofem-cephas/package.py
+++ b/var/spack/repos/builtin/packages/mofem-cephas/package.py
@@ -0,0 +1,100 @@
+##############################################################################
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class MofemCephas(CMakePackage):
+    """mofem-cephas core library"""
+
+    homepage = "http://mofem.eng.gla.ac.uk"
+    url = "https://bitbucket.org/likask/mofem-cephas.git"
+
+    maintainers = ['likask']
+
+    version('0.8.7', git='https://bitbucket.org/likask/mofem-cephas.git',
+        tag='v0.8.7', submodules=True)
+    version('develop',
+        git='https://bitbucket.org/likask/mofem-cephas.git',
+        branch='develop', submodules=True)
+
+    # This option can be only used for development of core lib
+    variant('copy_user_modules', default=True,
+        description='Copy user modules directory instead linking to source')
+    variant('adol-c', default=True, description='Compile with Adol-C')
+    variant('tetgen', default=True, description='Compile with Tetgen')
+    variant('med', default=True, description='Compile with Med')
+    variant('slepc', default=False, description='Compile with Slepc')
+
+    depends_on("mpi")
+    depends_on("boost")
+    depends_on("parmetis")
+    # Fixed version of hdf5, to remove some problems with dependent
+    # packages, f.e. MED format
+    depends_on("hdf5@:1.8.19+hl+mpi")
+    depends_on("petsc@:3.9.2+mumps+mpi")
+    depends_on('slepc', when='+slepc')
+    depends_on("moab")
+    # Upper bound set to ADOL-C until issues with memory leaks
+    # for versions 2.6: fully resolved
+    depends_on("adol-c@2.5.2~examples", when="+adol-c")
+    depends_on("tetgen", when="+tetgen")
+    depends_on("med", when='+med')
+
+    extendable = True
+
+    root_cmakelists_dir = 'mofem'
+
+    def cmake_args(self):
+        spec = self.spec
+        options = []
+
+        # obligatory options
+        options.extend([
+            '-DWITH_SPACK=YES',
+            '-DPETSC_DIR=%s' % spec['petsc'].prefix,
+            '-DPETSC_ARCH=',
+            '-DMOAB_DIR=%s' % spec['moab'].prefix,
+            '-DBOOST_DIR=%s' % spec['boost'].prefix])
+
+        # build tests
+        options.append('-DMOFEM_BUILD_TETS={0}'.format(
+            'ON' if self.run_tests else 'OFF'))
+
+        # variant packages
+        if '+adol-c' in spec:
+            options.append('-DADOL-C_DIR=%s' % spec['adol-c'].prefix)
+
+        if '+tetgen' in spec:
+            options.append('-DTETGEN_DIR=%s' % spec['tetgen'].prefix)
+
+        if '+med' in spec:
+            options.append('-DMED_DIR=%s' % spec['med'].prefix)
+
+        if '+slepc' in spec:
+            options.append('-DSLEPC_DIR=%s' % spec['slepc'].prefix)
+
+        # copy users modules, i.e. stand alone vs linked users modules
+        options.append(
+            '-DSTAND_ALLONE_USERS_MODULES=%s' %
+            ('YES' if '+copy_user_modules' in spec else 'NO'))
+        return options