add MoFEM packages (#8700)

* add mofem-cephas package * add mofem fracture module * add user modules build and fracture modyle * add minimal surface module * add slepc variant * bump mofem core lib version * bump mofem core lib version * bump version * fix bug * set upper bound to petsc version and other chanes * fix indentation * add minimal med file installation * chcekc with flake8 and installation with spack packages * add variants to med package * upper bound to adol-c and remove obsolete internal package install * fix basic module install * module install from external source in extended prefix * remove obsolte code and reverse to variant doxygen * fix git adress * improve packaging for mofem users modules * fix flake8 * move dependencies after variants * move root_cmakelists_dir right before cmake_args * remove unused variants * use append for single element * replace root_cmakelists_dir * use install_tree instead copy tree * simplify code * remove phase and mkdirp * add run tests * instal ext modules to ext_users_modules directory * move version below url * simplify directory name * use underscore in variant name * remove unused variable * fix link to blas libs * add missing boost dependence * fix problem with copying module source code * change variant name form doxygen to docs * add expanded description * make installation consistent with spack * fix flake8 * make extensions installed * code comments and minor corrections * make slepc variant false by default
2018-07-22 21:26:30 +01:00
parent a1d6909864
commit a18a642074
6 changed files with 456 additions and 0 deletions
--- a/var/spack/repos/builtin/packages/mofem-users-modules/package.py
+++ b/var/spack/repos/builtin/packages/mofem-users-modules/package.py
@@ -0,0 +1,82 @@
+##############################################################################
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+
+from spack import *
+
+
+class MofemUsersModules(CMakePackage):
+    """MofemUsersModules creates installation environment for user-provided
+    modules and extends of mofem-cephas package. The CMakeList.txt file for
+    user modules is located in mofem-cephas/user_modules prefix.
+    MofemUsersModules itself does not contain any code (is a dummy with a
+    single dummy version). It provide sources location of users modules, i.e.
+    mofem-fracture-module. Those are kept as a stand-alone package (instead
+    of resources) as they have different versions and developers. One can
+    install the extension, f.e. spack installs extension spack install
+    mofem-fracture-module. Next, create a symlink to run the code, f.e. spack
+    view symlink um_view mofem-cephas, and activate the extension, i.e. spack
+    activate um_view mofem-minimal-surface-equation. Basic mofem
+    functionality is available when with spack install mofem-users-modules,
+    it provides simple examples for calculating elasticity problems,
+    magnetostatics, saturated and unsaturated flow and a couple more. For
+    more information how to work with Spack and MoFEM see
+    http://mofem.eng.gla.ac.uk/mofem/html/install_spack.html"""
+
+    homepage = "http://mofem.eng.gla.ac.uk"
+    url = "https://bitbucket.org/likask/mofem-joseph/downloads/users_modules_dummy"
+    version('1.0', '5a8b22c9cdcad7bbad92b1590d55edb1', expand=False)
+
+    maintainers = ['likask']
+
+    variant('copy_user_modules', default=True,
+        description='Copy user modules directory instead linking')
+
+    extends('mofem-cephas')
+
+    @property
+    def root_cmakelists_dir(self):
+        """The relative path to the directory containing CMakeLists.txt
+
+        This path is relative to the root of the extracted tarball,
+        not to the ``build_directory``. Defaults to the current directory.
+
+        :return: directory containing CMakeLists.txt
+        """
+        spec = self.spec
+        return spec['mofem-cephas'].prefix.users_modules
+
+    def cmake_args(self):
+        spec = self.spec
+
+        options = []
+
+        # obligatory options
+        options.extend([
+            '-DWITH_SPACK=YES',
+            '-DSTAND_ALLONE_USERS_MODULES=%s' %
+            ('YES' if '+copy_user_modules' in spec else 'NO')])
+
+        # build tests
+        options.append('-DMOFEM_UM_BUILD_TETS={0}'.format(
+            'ON' if self.run_tests else 'OFF'))
+
+        return options