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swap-assembler: Create new package. (#8144)

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* swap-assembler: Create new package.

* swap-assembler: fix flake8 error.
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lingnanyuan 2018-05-17 15:43:30 -05:00 committed by Adam J. Stewart
parent 110511da92
commit a46f2b8e42
1 changed files with 43 additions and 0 deletions
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var/spack/repos/builtin/packages/swap-assembler/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class SwapAssembler(MakefilePackage):
"""A scalable and fully parallelized genome assembler."""
homepage = "https://sourceforge.net/projects/swapassembler/"
url = "https://sourceforge.net/projects/swapassembler/files/SWAP_Assembler-0.4.tar.bz2/download"
version('0.4', '944f2aeae4f451be81160bb625304fc3')
depends_on('mpich')
def edit(self, spec, prefix):
makefile = FileFilter('Makefile')
makefile.filter('$(CC) -O2', '$(CC) -pthread -O2', string=True)
def install(self, spec, prefix):
install_tree('.', prefix.bin)