Add py-sncosmo package
This commit is contained in:
Adam J. Stewart
parent
f351e011d1
commit
a660c60eb1
@ -24,29 +24,40 @@
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##############################################################################
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from spack import *
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class PyAstropy(Package):
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"""
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The Astropy Project is a community effort to develop a single core
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package for Astronomy in Python and foster interoperability between
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Python astronomy packages.
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"""
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homepage = 'http://www.astropy.org/'
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class PyAstropy(Package):
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"""The Astropy Project is a community effort to develop a single core
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package for Astronomy in Python and foster interoperability between
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Python astronomy packages."""
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homepage = 'http://www.astropy.org/'
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url = 'https://pypi.python.org/packages/source/a/astropy/astropy-1.1.2.tar.gz'
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version('1.1.2', 'cbe32023b5b1177d1e2498a0d00cda51')
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version('1.1.post1', 'b52919f657a37d45cc45f5cb0f58c44d')
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def url_for_version(self, version):
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return 'https://pypi.python.org/packages/source/a/astropy/astropy-{0}.tar.gz'.format(version)
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extends('python')
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# Required dependencies
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extends('python@2.6.5:2.7,3.3:')
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depends_on('py-numpy@1.6.0:')
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# Optional dependencies
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depends_on('cfitsio')
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depends_on('expat')
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depends_on('py-h5py')
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depends_on('py-numpy')
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depends_on('py-pyyaml')
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depends_on('py-scipy')
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depends_on('py-matplotlib')
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depends_on('py-pytz')
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depends_on('py-scikit-image')
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depends_on('py-pandas')
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# TODO: Add packages
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# depends_on('py-beautiful-soup')
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# depends_on('py-xmllint')
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# depends_on('py-wcsaxes')
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# depends_on('py-objgraph')
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def install(self, spec, prefix):
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python('setup.py', 'build', '--use-system-cfitsio',
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'--use-system-expat')
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python('setup.py', 'install', '--prefix=' + prefix)
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'--use-system-expat')
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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41
var/spack/repos/builtin/packages/py-emcee/package.py
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41
var/spack/repos/builtin/packages/py-emcee/package.py
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@ -0,0 +1,41 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyEmcee(Package):
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"""emcee is an MIT licensed pure-Python implementation of Goodman & Weare's
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Affine Invariant Markov chain Monte Carlo (MCMC) Ensemble sampler."""
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homepage = "http://dan.iel.fm/emcee/current/"
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url = "https://pypi.python.org/packages/source/e/emcee/emcee-2.1.0.tar.gz"
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version('2.1.0', 'c6b6fad05c824d40671d4a4fc58dfff7')
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extends('python')
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depends_on('py-numpy')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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@ -23,23 +23,34 @@
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import re
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class PyH5py(Package):
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"""The h5py package provides both a high- and low-level interface to the HDF5 library from Python."""
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"""The h5py package provides both a high- and low-level interface to the
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HDF5 library from Python."""
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homepage = "https://pypi.python.org/pypi/h5py"
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url = "https://pypi.python.org/packages/source/h/h5py/h5py-2.4.0.tar.gz"
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version('2.4.0', '80c9a94ae31f84885cc2ebe1323d6758')
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version('2.6.0', 'ec476211bd1de3f5ac150544189b0bf4')
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version('2.5.0', '6e4301b5ad5da0d51b0a1e5ac19e3b74')
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version('2.4.0', '80c9a94ae31f84885cc2ebe1323d6758')
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extends('python', ignore=lambda f: re.match(r'bin/cy*', f))
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depends_on('hdf5')
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depends_on('py-numpy')
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variant('mpi', default=False, description='Build with MPI support')
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extends('python', ignore=r'bin/cy.*')
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depends_on('hdf5@1.8.4:+mpi', when='+mpi')
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depends_on('hdf5@1.8.4:~mpi', when='~mpi')
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depends_on('py-numpy@1.6.1:')
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depends_on('py-cython')
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depends_on('py-six')
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depends_on('py-pkgconfig')
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depends_on('mpi', when='+mpi')
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def install(self, spec, prefix):
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python('setup.py', 'configure', '--hdf5=%s' % spec['hdf5'].prefix)
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python('setup.py', 'install', '--prefix=%s' % prefix)
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python('setup.py', 'configure',
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'--hdf5={0}'.format(spec['hdf5'].prefix))
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if '+mpi' in spec:
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env['CC'] = spec['mpi'].mpicc
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python('setup.py', 'configure', '--mpi')
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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54
var/spack/repos/builtin/packages/py-iminuit/package.py
Normal file
54
var/spack/repos/builtin/packages/py-iminuit/package.py
Normal file
@ -0,0 +1,54 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyIminuit(Package):
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"""Interactive IPython-Friendly Minimizer based on SEAL Minuit2."""
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homepage = "https://pypi.python.org/pypi/iminuit"
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url = "https://pypi.python.org/packages/source/i/iminuit/iminuit-1.2.tar.gz"
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version('1.2', '4701ec472cae42015e26251703e6e984')
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# Required dependencies
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extends('python@2.7:2.8,3.4:')
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depends_on('py-setuptools')
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# Optional dependencies
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depends_on('py-numpy')
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depends_on('py-matplotlib')
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def install(self, spec, prefix):
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site_packages = '{0}/lib/python{1}/site-packages'.format(
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prefix, spec['python'].version.up_to(2))
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# site-packages directory must already exist
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mkdirp(site_packages)
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# PYTHONPATH must include site-packages directory
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env['PYTHONPATH'] += ':{0}'.format(site_packages)
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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44
var/spack/repos/builtin/packages/py-nestle/package.py
Normal file
44
var/spack/repos/builtin/packages/py-nestle/package.py
Normal file
@ -0,0 +1,44 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PyNestle(Package):
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"""Nested sampling algorithms for evaluating Bayesian evidence."""
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homepage = "http://kbarbary.github.io/nestle/"
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url = "https://pypi.python.org/packages/source/n/nestle/nestle-0.1.1.tar.gz"
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version('0.1.1', '4875c0f9a0a8e263c1d7f5fa6ce604c5')
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# Required dependencies
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extends('python')
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depends_on('py-numpy@1.6:')
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# Optional dependencies
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depends_on('py-scipy')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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51
var/spack/repos/builtin/packages/py-sncosmo/package.py
Normal file
51
var/spack/repos/builtin/packages/py-sncosmo/package.py
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@ -0,0 +1,51 @@
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##############################################################################
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# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/llnl/spack
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# Please also see the LICENSE file for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class PySncosmo(Package):
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"""SNCosmo is a Python library for high-level supernova cosmology
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analysis."""
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homepage = "http://sncosmo.readthedocs.io/"
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url = "https://pypi.python.org/packages/source/s/sncosmo/sncosmo-1.2.0.tar.gz"
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version('1.2.0', '028e6d1dc84ab1c17d2f3b6378b2cb1e')
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# Required dependencies
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# py-sncosmo binaries are duplicates of those from py-astropy
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extends('python@2.6:2.7,3.3:', ignore=r'bin/*')
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depends_on('py-numpy')
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depends_on('py-scipy')
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depends_on('py-astropy')
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# Recommended dependencies
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depends_on('py-matplotlib')
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depends_on('py-iminuit')
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depends_on('py-emcee')
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depends_on('py-nestle')
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def install(self, spec, prefix):
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python('setup.py', 'install', '--prefix={0}'.format(prefix))
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