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trimgalore: add 0.6.10, adding variants (#38206)

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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
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George Young 2023-06-08 20:55:03 +01:00 committed by GitHub
parent d7719b26f9
commit a97bd31afe
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var/spack/repos/builtin/packages/trimgalore/package.py
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@ -14,6 +14,7 @@ class Trimgalore(Package):
homepage = "https://github.com/FelixKrueger/TrimGalore"
url = "https://github.com/FelixKrueger/TrimGalore/archive/0.4.4.tar.gz"
version("0.6.10", sha256="3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017")
version("0.6.9", sha256="d50ce6106f979c316c89c7e7bcb44e5f841935d88bc4f756ccf0bc4cbab4e6f5")
version("0.6.6", sha256="b8db8ffd131d9d9e7c8532a5a1f1caee656c0c58d3eafd460fee3c39b9fcab5e")
version("0.6.4", sha256="eb57e18203d8a1dce1397b930a348a9969eebaa758b8a7304d04c22f216cea2d")
@ -24,9 +25,16 @@ class Trimgalore(Package):
version("0.4.5", sha256="a6b97e554944ddc6ecd50e78df486521f17225d415aad84e9911163faafe1f3c")
version("0.4.4", sha256="485a1357e08eadeb5862bbb796022a25a6ace642c4bc13bbaf453b7dc7cff8e2")
variant("pigz", default=False, description="Use pigz for compression", when="@0.6.0:")
variant("igzip", default=False, description="Use igzip for compression", when="@0.6.8:")
# general dependencies
depends_on("perl", type=("build", "run"))
depends_on("py-cutadapt", type=("build", "run"))
depends_on("fastqc")
# variant dependencies
depends_on("pigz", type="run", when="+pigz")
depends_on("libisal", type="run", when="+igzip")
def install(self, spec, prefix):
filter_file(r"#!/usr/bin/perl", "#!/usr/bin/env perl", "trim_galore")