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sparta: new package (#4867)

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* sparta: new package

* fixing homepage
This commit is contained in:
Audrey Thoma 2017-07-21 21:40:31 -05:00 committed by Adam J. Stewart
parent e191ead9ac
commit aa96e1671b
1 changed files with 46 additions and 0 deletions
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var/spack/repos/builtin/packages/sparta/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Sparta(Package):
"""small RNA-PARE Target Analyzer (sPARTA) is a tool which utilizes
high-throughput sequencing to profile genome-wide cleavage
products."""
homepage = "https://github.com/atulkakrana/sPARTA.github"
url = "https://github.com/atulkakrana/sPARTA/archive/1.25.tar.gz"
version('1.25', '50fda66bf860f63ae8aef5e8fb997a75')
depends_on('bowtie2')
depends_on('python@3:', type=('build', 'run'))
depends_on('py-scipy', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install('sPARTA.py', prefix.bin)
install('revFernoMap.py', prefix.bin)