Add package for daligner (#4734)

var/spack/repos/builtin/packages/daligner/package.py

@@ -0,0 +1,51 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Daligner(MakefilePackage):
+    """Daligner: The Dazzler "Overlap" Module."""
+
+    homepage = "https://github.com/thegenemyers/DALIGNER"
+    url      = "https://github.com/thegenemyers/DALIGNER/archive/V1.0.tar.gz"
+
+    version('1.0', 'f1b4c396ae062caa4c0e6423ba0725ef')
+
+    def edit(self, spec, prefix):
+        makefile = FileFilter('Makefile')
+        kwargs = {'ignore_absent': False, 'backup': False, 'string': True}
+        makefile.filter('cp $(ALL) ~/bin',
+                        'cp $(ALL) {0}'.format(prefix.bin),
+                        **kwargs)
+        # He changed the Makefile in commit dae119.
+        # You'll need this instead if/when he cuts a new release
+        # or if you try to build from the tip of master.
+        # makefile.filter('DEST_DIR = .*',
+        #                'DEST_DIR = {0}'.format(prefix.bin))
+        # or pass DEST_DIR in to the make
+
+    @run_before('install')
+    def make_prefix_dot_bin(self):
+        mkdir(prefix.bin)