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Merged in current develop to cflags 042716

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This commit is contained in:
Gregory Becker
2016-04-27 19:38:51 -07:00
parent 8e54babf10 dd84a57580
commit ae5198e5e7
749 changed files with 37679 additions and 4792 deletions
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12
var/spack/repos/builtin.mock/packages/a/package.py Normal file
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from spack import *
class A(Package):
"""Simple package with no dependencies"""
homepage = "http://www.example.com"
url = "http://www.example.com/a-1.0.tar.gz"
version('1.0', '0123456789abcdef0123456789abcdef')
def install(self, spec, prefix):
pass

12
var/spack/repos/builtin.mock/packages/b/package.py Normal file
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from spack import *
class B(Package):
"""Simple package with no dependencies"""
homepage = "http://www.example.com"
url = "http://www.example.com/b-1.0.tar.gz"
version('1.0', '0123456789abcdef0123456789abcdef')
def install(self, spec, prefix):
pass

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var/spack/repos/builtin.mock/packages/c/package.py Normal file
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from spack import *
class C(Package):
"""Simple package with no dependencies"""
homepage = "http://www.example.com"
url = "http://www.example.com/c-1.0.tar.gz"
version('1.0', '0123456789abcdef0123456789abcdef')
def install(self, spec, prefix):
pass

41
var/spack/repos/builtin.mock/packages/callpath/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Callpath(Package):
homepage = "https://github.com/tgamblin/callpath"
url = "http://github.com/tgamblin/callpath-1.0.tar.gz"
version(0.8, 'foobarbaz')
version(0.9, 'foobarbaz')
version(1.0, 'foobarbaz')
depends_on("dyninst")
depends_on("mpi")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

89
var/spack/repos/builtin.mock/packages/cmake-client/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
def check(condition, msg):
"""Raise an install error if condition is False."""
if not condition:
raise InstallError(msg)
class CmakeClient(Package):
"""A dumy package that uses cmake."""
homepage = 'https://www.example.com'
url = 'https://www.example.com/cmake-client-1.0.tar.gz'
version('1.0', '4cb3ff35b2472aae70f542116d616e63')
depends_on('cmake')
def setup_environment(self, spack_env, run_env):
spack_cc # Ensure spack module-scope variable is avaiabl
check(from_cmake == "from_cmake",
"setup_environment couldn't read global set by cmake.")
check(self.spec['cmake'].link_arg == "test link arg",
"link arg on dependency spec not readable from setup_environment.")
def setup_dependent_environment(self, spack_env, run_env, dspec):
spack_cc # Ensure spack module-scope variable is avaiable
check(from_cmake == "from_cmake",
"setup_dependent_environment couldn't read global set by cmake.")
check(self.spec['cmake'].link_arg == "test link arg",
"link arg on dependency spec not readable from setup_dependent_environment.")
def setup_dependent_package(self, module, dspec):
spack_cc # Ensure spack module-scope variable is avaiable
check(from_cmake == "from_cmake",
"setup_dependent_package couldn't read global set by cmake.")
check(self.spec['cmake'].link_arg == "test link arg",
"link arg on dependency spec not readable from setup_dependent_package.")
def install(self, spec, prefix):
# check that cmake is in the global scope.
global cmake
check(cmake is not None, "No cmake was in environment!")
# check that which('cmake') returns the right one.
cmake = which('cmake')
check(cmake.exe[0].startswith(spec['cmake'].prefix.bin),
"Wrong cmake was in environment: %s" % cmake)
check(from_cmake == "from_cmake",
"Couldn't read global set by cmake.")
check(os.environ['from_cmake'] == 'from_cmake',
"Couldn't read env var set in envieonmnt by dependency")
mkdirp(prefix.bin)
touch(join_path(prefix.bin, 'dummy'))

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var/spack/repos/builtin.mock/packages/cmake/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
def check(condition, msg):
"""Raise an install error if condition is False."""
if not condition:
raise InstallError(msg)
class Cmake(Package):
"""A dumy package for the cmake build system."""
homepage = 'https://www.cmake.org'
url = 'https://cmake.org/files/v3.4/cmake-3.4.3.tar.gz'
version('3.4.3', '4cb3ff35b2472aae70f542116d616e63',
url='https://cmake.org/files/v3.4/cmake-3.4.3.tar.gz')
def setup_environment(self, spack_env, run_env):
spack_cc # Ensure spack module-scope variable is avaiable
spack_env.set('for_install', 'for_install')
def setup_dependent_environment(self, spack_env, run_env, dspec):
spack_cc # Ensure spack module-scope variable is avaiable
spack_env.set('from_cmake', 'from_cmake')
def setup_dependent_package(self, module, dspec):
spack_cc # Ensure spack module-scope variable is avaiable
self.spec.from_cmake = "from_cmake"
module.from_cmake = "from_cmake"
self.spec.link_arg = "test link arg"
def install(self, spec, prefix):
mkdirp(prefix.bin)
check(os.environ['for_install'] == 'for_install',
"Couldn't read env var set in compile envieonmnt")
cmake_exe = join_path(prefix.bin, 'cmake')
touch(cmake_exe)
set_executable(cmake_exe)

36
var/spack/repos/builtin.mock/packages/direct_mpich/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class DirectMpich(Package):
homepage = "http://www.example.com"
url = "http://www.example.com/direct_mpich-1.0.tar.gz"
version('1.0', 'foobarbaz')
depends_on('mpich')
def install(self, spec, prefix):
pass

44
var/spack/repos/builtin.mock/packages/dyninst/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Dyninst(Package):
homepage = "https://paradyn.org"
url = "http://www.paradyn.org/release8.1/DyninstAPI-8.1.1.tgz"
version('8.2', 'cxyzab',
url='http://www.paradyn.org/release8.2/DyninstAPI-8.2.tgz')
version('8.1.2', 'bcxyza',
url='http://www.paradyn.org/release8.1.2/DyninstAPI-8.1.2.tgz')
version('8.1.1', 'abcxyz',
url='http://www.paradyn.org/release8.1/DyninstAPI-8.1.1.tgz')
depends_on("libelf")
depends_on("libdwarf")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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var/spack/repos/builtin.mock/packages/e/package.py Normal file
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from spack import *
class E(Package):
"""Simple package with no dependencies"""
homepage = "http://www.example.com"
url = "http://www.example.com/e-1.0.tar.gz"
version('1.0', '0123456789abcdef0123456789abcdef')
def install(self, spec, prefix):
pass

34
var/spack/repos/builtin.mock/packages/externalprereq/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://scalability-llnl.github.io/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Externalprereq(Package):
homepage = "http://somewhere.com"
url = "http://somewhere.com/prereq-1.0.tar.gz"
version('1.4', 'f1234567890abcdef1234567890abcde')
def install(self, spec, prefix):
pass

37
var/spack/repos/builtin.mock/packages/externaltest/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://scalability-llnl.github.io/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Externaltest(Package):
homepage = "http://somewhere.com"
url = "http://somewhere.com/test-1.0.tar.gz"
version('1.0', '1234567890abcdef1234567890abcdef')
depends_on('stuff')
depends_on('externaltool')
def install(self, spec, prefix):
pass

36
var/spack/repos/builtin.mock/packages/externaltool/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://scalability-llnl.github.io/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Externaltool(Package):
homepage = "http://somewhere.com"
url = "http://somewhere.com/tool-1.0.tar.gz"
version('1.0', '1234567890abcdef1234567890abcdef')
depends_on('externalprereq')
def install(self, spec, prefix):
pass

37
var/spack/repos/builtin.mock/packages/externalvirtual/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://scalability-llnl.github.io/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Externalvirtual(Package):
homepage = "http://somewhere.com"
url = "http://somewhere.com/stuff-1.0.tar.gz"
version('1.0', '1234567890abcdef1234567890abcdef')
version('2.0', '234567890abcdef1234567890abcdef1')
provides('stuff')
def install(self, spec, prefix):
pass

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var/spack/repos/builtin.mock/packages/fake/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Fake(Package):
homepage = "http://www.fake-spack-example.org"
url = "http://www.fake-spack-example.org/downloads/fake-1.0.tar.gz"
version('1.0', 'foobarbaz')
def install(self, spec, prefix):
pass

10
var/spack/repos/builtin.mock/packages/git-test/package.py Normal file
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from spack import *
class GitTest(Package):
"""Mock package that uses git for fetching."""
homepage = "http://www.git-fetch-example.com"
version('git', git='to-be-filled-in-by-test')
def install(self, spec, prefix):
pass

10
var/spack/repos/builtin.mock/packages/hg-test/package.py Normal file
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from spack import *
class HgTest(Package):
"""Test package that does fetching with mercurial."""
homepage = "http://www.hg-fetch-example.com"
version('hg', hg='to-be-filled-in-by-test')
def install(self, spec, prefix):
pass

39
var/spack/repos/builtin.mock/packages/hypre/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Hypre(Package):
"""Hypre is included here as an example of a package that depends on
both LAPACK and BLAS."""
homepage = "http://www.openblas.net"
url = "http://github.com/xianyi/OpenBLAS/archive/v0.2.15.tar.gz"
version('0.2.15', 'b1190f3d3471685f17cfd1ec1d252ac9')
depends_on('lapack')
depends_on('blas')
def install(self, spec, prefix):
pass

41
var/spack/repos/builtin.mock/packages/indirect_mpich/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class IndirectMpich(Package):
"""Test case for a package that depends on MPI and one of its
dependencies requires a *particular version* of MPI.
"""
homepage = "http://www.example.com"
url = "http://www.example.com/indirect_mpich-1.0.tar.gz"
version(1.0, 'foobarbaz')
depends_on('mpi')
depends_on('direct_mpich')
def install(self, spec, prefix):
pass

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var/spack/repos/builtin.mock/packages/libdwarf/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
import os
# Only build certain parts of dwarf because the other ones break.
dwarf_dirs = ['libdwarf', 'dwarfdump2']
class Libdwarf(Package):
homepage = "http://www.prevanders.net/dwarf.html"
url = "http://www.prevanders.net/libdwarf-20130729.tar.gz"
list_url = homepage
version(20130729, "64b42692e947d5180e162e46c689dfbf")
version(20130207, 'foobarbaz')
version(20111030, 'foobarbaz')
version(20070703, 'foobarbaz')
depends_on("libelf")
def install(self, spec, prefix):
pass

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var/spack/repos/builtin.mock/packages/libelf/package.py Normal file
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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Libelf(Package):
homepage = "http://www.mr511.de/software/english.html"
url = "http://www.mr511.de/software/libelf-0.8.13.tar.gz"
version('0.8.13', '4136d7b4c04df68b686570afa26988ac')
version('0.8.12', 'e21f8273d9f5f6d43a59878dc274fec7')
version('0.8.10', '9db4d36c283d9790d8fa7df1f4d7b4d9')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--enable-shared",
"--disable-dependency-tracking",
"--disable-debug")
make()
# The mkdir commands in libelf's intsall can fail in parallel
make("install", parallel=False)

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Mpich(Package):
homepage = "http://www.mpich.org"
url = "http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz"
list_url = "http://www.mpich.org/static/downloads/"
list_depth = 2
variant('debug', default=False,
description="Compile MPICH with debug flags.")
version('3.0.4', '9c5d5d4fe1e17dd12153f40bc5b6dbc0')
version('3.0.3', 'foobarbaz')
version('3.0.2', 'foobarbaz')
version('3.0.1', 'foobarbaz')
version('3.0', 'foobarbaz')
version('1.0', 'foobarbas')
provides('mpi@:3', when='@3:')
provides('mpi@:1', when='@:1')
def install(self, spec, prefix):
pass

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Mpich2(Package):
homepage = "http://www.mpich.org"
url = "http://www.mpich.org/static/downloads/1.5/mpich2-1.5.tar.gz"
list_url = "http://www.mpich.org/static/downloads/"
list_depth = 2
version('1.5', '9c5d5d4fe1e17dd12153f40bc5b6dbc0')
version('1.4', 'foobarbaz')
version('1.3', 'foobarbaz')
version('1.2', 'foobarbaz')
version('1.1', 'foobarbaz')
version('1.0', 'foobarbaz')
provides('mpi@:2.0')
provides('mpi@:2.1', when='@1.1:')
provides('mpi@:2.2', when='@1.2:')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Mpileaks(Package):
homepage = "http://www.llnl.gov"
url = "http://www.llnl.gov/mpileaks-1.0.tar.gz"
version(1.0, 'foobarbaz')
version(2.1, 'foobarbaz')
version(2.2, 'foobarbaz')
version(2.3, 'foobarbaz')
variant('debug', default=False, description='Debug variant')
variant('opt', default=False, description='Optimized variant')
depends_on("mpi")
depends_on("callpath")
def install(self, spec, prefix):
pass

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Multimethod(Package):
"""This package is designed for use with Spack's multimethod test.
It has a bunch of test cases for the @when decorator that the
test uses.
"""
homepage = 'http://www.example.com/'
url = 'http://www.example.com/example-1.0.tar.gz'
#
# These functions are only valid for versions 1, 2, and 3.
#
@when('@1.0')
def no_version_2(self):
return 1
@when('@3.0')
def no_version_2(self):
return 3
@when('@4.0')
def no_version_2(self):
return 4
#
# These functions overlap, so there is ambiguity, but we'll take
# the first one.
#
@when('@:4')
def version_overlap(self):
return 1
@when('@2:')
def version_overlap(self):
return 2
#
# More complicated case with cascading versions.
#
def mpi_version(self):
return 0
@when('^mpi@3:')
def mpi_version(self):
return 3
@when('^mpi@2:')
def mpi_version(self):
return 2
@when('^mpi@1:')
def mpi_version(self):
return 1
#
# Use these to test whether the default method is called when no
# match is found. This also tests whether we can switch methods
# on compilers
#
def has_a_default(self):
return 'default'
@when('%gcc')
def has_a_default(self):
return 'gcc'
@when('%intel')
def has_a_default(self):
return 'intel'
#
# Make sure we can switch methods on different architectures
#
@when('arch=x86_64')
def different_by_architecture(self):
return 'x86_64'
@when('arch=ppc64')
def different_by_architecture(self):
return 'ppc64'
@when('arch=ppc32')
def different_by_architecture(self):
return 'ppc32'
@when('arch=arm64')
def different_by_architecture(self):
return 'arm64'
#
# Make sure we can switch methods on different dependencies
#
@when('^mpich')
def different_by_dep(self):
return 'mpich'
@when('^zmpi')
def different_by_dep(self):
return 'zmpi'
#
# Make sure we can switch on virtual dependencies
#
def different_by_virtual_dep(self):
return 1
@when('^mpi@2:')
def different_by_virtual_dep(self):
return 2

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##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class NetlibBlas(Package):
homepage = "http://www.netlib.org/lapack/"
url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz"
version('3.5.0', 'b1d3e3e425b2e44a06760ff173104bdf')
provides('blas')
def install(self, spec, prefix):
pass

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##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class NetlibLapack(Package):
homepage = "http://www.netlib.org/lapack/"
url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz"
version('3.5.0', 'b1d3e3e425b2e44a06760ff173104bdf')
provides('lapack')
depends_on('blas')
def install(self, spec, prefix):
pass

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##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class OpenblasWithLapack(Package):
"""Dummy version of OpenBLAS that also provides LAPACK, for testing."""
homepage = "http://www.openblas.net"
url = "http://github.com/xianyi/OpenBLAS/archive/v0.2.15.tar.gz"
version('0.2.15', 'b1190f3d3471685f17cfd1ec1d252ac9')
provides('lapack')
provides('blas')
def install(self, spec, prefix):
pass

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##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Openblas(Package):
"""OpenBLAS: An optimized BLAS library"""
homepage = "http://www.openblas.net"
url = "http://github.com/xianyi/OpenBLAS/archive/v0.2.15.tar.gz"
version('0.2.15', 'b1190f3d3471685f17cfd1ec1d252ac9')
provides('blas')
def install(self, spec, prefix):
pass

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from spack import *
class OptionalDepTest2(Package):
"""Depends on the optional-dep-test package"""
homepage = "http://www.example.com"
url = "http://www.example.com/optional-dep-test-2-1.0.tar.gz"
version('1.0', '0123456789abcdef0123456789abcdef')
variant('odt', default=False)
variant('mpi', default=False)
depends_on('optional-dep-test', when='+odt')
depends_on('optional-dep-test+mpi', when='+mpi')
def install(self, spec, prefix):
pass

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from spack import *
class OptionalDepTest3(Package):
"""Depends on the optional-dep-test package"""
homepage = "http://www.example.com"
url = "http://www.example.com/optional-dep-test-3-1.0.tar.gz"
version('1.0', '0123456789abcdef0123456789abcdef')
variant('var', default=False)
depends_on('a', when='~var')
depends_on('b', when='+var')
def install(self, spec, prefix):
pass

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from spack import *
class OptionalDepTest(Package):
"""Description"""
homepage = "http://www.example.com"
url = "http://www.example.com/optional_dep_test-1.0.tar.gz"
version('1.0', '0123456789abcdef0123456789abcdef')
version('1.1', '0123456789abcdef0123456789abcdef')
variant('a', default=False)
variant('f', default=False)
variant('mpi', default=False)
depends_on('a', when='+a')
depends_on('b', when='@1.1')
depends_on('c', when='%intel')
depends_on('d', when='%intel@64.1')
depends_on('e', when='%clang@34:40')
depends_on('f', when='+f')
depends_on('g', when='^f')
depends_on('mpi', when='^g')
depends_on('mpi', when='+mpi')
def install(self, spec, prefix):
pass

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##############################################################################
# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Python(Package):
"""Dummy Python package to demonstrate preferred versions."""
homepage = "http://www.python.org"
url = "http://www.python.org/ftp/python/2.7.8/Python-2.7.8.tgz"
extendable = True
version('3.5.1', 'be78e48cdfc1a7ad90efff146dce6cfe')
version('3.5.0', 'a56c0c0b45d75a0ec9c6dee933c41c36')
version('2.7.11', '6b6076ec9e93f05dd63e47eb9c15728b', preferred=True)
version('2.7.10', 'd7547558fd673bd9d38e2108c6b42521')
version('2.7.9', '5eebcaa0030dc4061156d3429657fb83')
version('2.7.8', 'd4bca0159acb0b44a781292b5231936f')
def install(self, spec, prefix):
pass

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from spack import *
class SvnTest(Package):
"""Mock package that uses svn for fetching."""
url = "http://www.example.com/svn-test-1.0.tar.gz"
version('svn', 'to-be-filled-in-by-test')
def install(self, spec, prefix):
pass

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class TrivialInstallTestPackage(Package):
"""This package is a stub with a trivial install method. It allows us
to test the install and uninstall logic of spack."""
homepage = "http://www.example.com/trivial_install"
url = "http://www.unit-test-should-replace-this-url/trivial_install-1.0.tar.gz"
version('1.0', 'foobarbaz')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make('install')

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Zmpi(Package):
"""This is a fake MPI package used to demonstrate virtual package providers
with dependencies."""
homepage = "http://www.spack-fake-zmpi.org"
url = "http://www.spack-fake-zmpi.org/downloads/zmpi-1.0.tar.gz"
version('1.0', 'foobarbaz')
provides('mpi@:10.0')
depends_on('fake')
def install(self, spec, prefix):
pass

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repo:
namespace: builtin.mock

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from spack import *
class Imagemagick(Package):
"""ImageMagick is a image processing library"""
homepage = "http://www.imagemagic.org"
#-------------------------------------------------------------------------
# ImageMagick does not keep around anything but *-10 versions, so
# this URL may change. If you want the bleeding edge, you can
# uncomment it and see if it works but you may need to try to
# fetch a newer version (-6, -7, -8, -9, etc.) or you can stick
# wtih the older, stable, archived -10 versions below.
#
# TODO: would be nice if spack had a way to recommend avoiding a
# TODO: bleeding edge version, but not comment it out.
# -------------------------------------------------------------------------
# version('6.9.0-6', 'c1bce7396c22995b8bdb56b7797b4a1b',
# url="http://www.imagemagick.org/download/ImageMagick-6.9.0-6.tar.bz2")
#-------------------------------------------------------------------------
# *-10 versions are archived, so these versions should fetch reliably.
# -------------------------------------------------------------------------
version('6.8.9-10', 'aa050bf9785e571c956c111377bbf57c',
url="http://sourceforge.net/projects/imagemagick/files/old-sources/6.x/6.8/ImageMagick-6.8.9-10.tar.gz/download")
depends_on('libtool')
depends_on('jpeg')
depends_on('libpng')
depends_on('freetype')
depends_on('fontconfig')
depends_on('libtiff')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Mitos(Package):
"""Mitos is a library and a tool for collecting sampled memory
performance data to view with MemAxes"""
homepage = "https://github.com/llnl/Mitos"
url = "https://github.com/llnl/Mitos"
version('0.9.2',
git='https://github.com/llnl/Mitos.git',
commit='8cb143a2e8c00353ff531a781a9ca0992b0aaa3d')
version('0.9.1',
git='https://github.com/llnl/Mitos.git',
tag='v0.9.1')
depends_on('dyninst@8.2.1:')
depends_on('hwloc')
depends_on('mpi')
def install(self, spec, prefix):
with working_dir('spack-build', create=True):
cmake('..', *std_cmake_args)
make()
make("install")

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from spack import *
class R(Package):
"""
R is 'GNU S', a freely available language and environment for statistical computing and graphics which provides a
wide variety of statistical and graphical techniques: linear and nonlinear modelling, statistical tests, time series
analysis, classification, clustering, etc. Please consult the R project homepage for further information.
"""
homepage = "https://www.r-project.org"
url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz"
version('3.2.3', '1ba3dac113efab69e706902810cc2970')
version('3.2.2', '57cef5c2e210a5454da1979562a10e5b')
version('3.2.1', 'c2aac8b40f84e08e7f8c9068de9239a3')
version('3.2.0', '66fa17ad457d7e618191aa0f52fc402e')
version('3.1.3', '53a85b884925aa6b5811dfc361d73fc4')
version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74')
variant('external-lapack', default=False, description='Links to externally installed BLAS/LAPACK')
# Virtual dependencies
depends_on('blas', when='+external-lapack')
depends_on('lapack', when='+external-lapack')
# Concrete dependencies
depends_on('readline')
depends_on('ncurses')
depends_on('icu')
depends_on('glib')
depends_on('zlib')
depends_on('libtiff')
depends_on('jpeg')
depends_on('cairo')
depends_on('pango')
depends_on('freetype')
depends_on('tcl')
depends_on('tk')
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix,
'--enable-R-shlib',
'--enable-BLAS-shlib']
if '+external-lapack' in spec:
options.extend(['--with-blas', '--with-lapack'])
configure(*options)
make()
make('install')

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@@ -0,0 +1,20 @@
--- SAMRAI/Makefile.in 2013-05-31 11:04:32.000000000 -0700
+++ SAMRAI/Makefile.in.notools 2014-05-30 10:31:15.135979900 -0700
@@ -8,7 +8,7 @@
##
#########################################################################
-default: library tools
+default: library
SAMRAI = @top_srcdir@
SUBDIR = .
@@ -135,7 +135,7 @@
done
$(MAKE) archive_remove_obj_names
-install: library tools
+install: library
$(INSTALL) -d -m 755 $(INSTDIR)/config
$(INSTALL) -d -m 755 $(INSTDIR)/lib
$(INSTALL) -d -m 755 $(INSTDIR)/bin

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from spack import *
class Samrai(Package):
"""SAMRAI (Structured Adaptive Mesh Refinement Application Infrastructure)
is an object-oriented C++ software library enables exploration of numerical,
algorithmic, parallel computing, and software issues associated with applying
structured adaptive mesh refinement (SAMR) technology in large-scale parallel
application development.
"""
homepage = "https://computation.llnl.gov/project/SAMRAI/"
url = "https://computation.llnl.gov/project/SAMRAI/download/SAMRAI-v3.9.1.tar.gz"
list_url = homepage
version('3.9.1', '232d04d0c995f5abf20d94350befd0b2')
version('3.8.0', 'c18fcffa706346bfa5828b36787ce5fe')
version('3.7.3', '12d574eacadf8c9a70f1bb4cd1a69df6')
version('3.7.2', 'f6a716f171c9fdbf3cb12f71fa6e2737')
version('3.6.3-beta', 'ef0510bf2893042daedaca434e5ec6ce')
version('3.5.2-beta', 'd072d9d681eeb9ada15ce91bea784274')
version('3.5.0-beta', '1ad18a319fc573e12e2b1fbb6f6b0a19')
version('3.4.1-beta', '00814cbee2cb76bf8302aff56bbb385b')
version('3.3.3-beta', '1db3241d3e1cab913dc310d736c34388')
version('3.3.2-beta', 'e598a085dab979498fcb6c110c4dd26c')
version('2.4.4', '04fb048ed0efe7c531ac10c81cc5f6ac')
depends_on("mpi")
depends_on("zlib")
depends_on("hdf5+mpi")
depends_on("boost")
# don't build tools with gcc
patch('no-tool-build.patch', when='%gcc')
# TODO: currently hard-coded to use openmpi - be careful!
def install(self, spec, prefix):
configure(
"--prefix=%s" % prefix,
"--with-CXX=%s" % spec['mpi'].prefix.bin + "/mpic++",
"--with-CC=%s" % spec['mpi'].prefix.bin + "/mpicc",
"--with-hdf5=%s" % spec['hdf5'].prefix,
"--with-boost=%s" % spec['boost'].prefix,
"--with-zlib=%s" % spec['zlib'].prefix,
"--without-blas",
"--without-lapack",
"--with-hypre=no",
"--with-petsc=no",
"--enable-opt",
"--disable-debug")
make()
make("install")

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from spack import *
class Activeharmony(Package):
"""Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application)."""
homepage = "http://www.dyninst.org/harmony"
url = "http://www.dyninst.org/sites/default/files/downloads/harmony/ah-4.5.tar.gz"
version('4.5', 'caee5b864716d376e2c25d739251b2a9')
def install(self, spec, prefix):
make("CFLAGS=-O3")
make("install", 'PREFIX=%s' % prefix)
from spack import *

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@@ -0,0 +1,42 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class AdeptUtils(Package):
"""Utility libraries for LLNL performance tools."""
homepage = "https://github.com/llnl/adept-utils"
url = "https://github.com/llnl/adept-utils/archive/v1.0.tar.gz"
version('1.0.1', '731a310717adcb004d9d195130efee7d')
version('1.0', '5c6cd9badce56c945ac8551e34804397')
depends_on("boost")
depends_on("mpi")
def install(self, spec, prefix):
cmake(*std_cmake_args)
make()
make("install")

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from spack import *
from spack.util.environment import *
class Apex(Package):
homepage = "http://github.com/khuck/xpress-apex"
url = "http://github.com/khuck/xpress-apex/archive/v0.1.tar.gz"
version('0.1', '8b95f0c0313da1575960d3ad69f18e75')
depends_on("binutils+libiberty")
depends_on("boost@1.54:")
depends_on("cmake@2.8.12:")
depends_on("activeharmony@4.5:")
depends_on("ompt-openmp")
def install(self, spec, prefix):
path=get_path("PATH")
path.remove(spec["binutils"].prefix.bin)
path_set("PATH", path)
with working_dir("build", create=True):
cmake('-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DUSE_BFD=TRUE',
'-DBFD_ROOT=%s' % spec['binutils'].prefix,
'-DUSE_ACTIVEHARMONY=TRUE',
'-DACTIVEHARMONY_ROOT=%s' % spec['activeharmony'].prefix,
'-DUSE_OMPT=TRUE',
'-DOMPT_ROOT=%s' % spec['ompt-openmp'].prefix,
'..', *std_cmake_args)
make()
make("install")

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@@ -0,0 +1,44 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class AprUtil(Package):
"""Apache Portable Runtime Utility"""
homepage = 'https://apr.apache.org/'
url = 'http://archive.apache.org/dist/apr/apr-util-1.5.4.tar.gz'
version('1.5.4', '866825c04da827c6e5f53daff5569f42')
depends_on('apr')
def install(self, spec, prefix):
# configure, build, install:
options = ['--prefix=%s' % prefix]
options.append('--with-apr=%s' % spec['apr'].prefix)
configure(*options)
make()
make('install')

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@@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Apr(Package):
"""Apache portable runtime."""
homepage = 'https://apr.apache.org/'
url = 'http://archive.apache.org/dist/apr/apr-1.5.2.tar.gz'
version('1.5.2', '98492e965963f852ab29f9e61b2ad700')
def install(self, spec, prefix):
options = ['--prefix=%s' % prefix]
configure(*options)
make()
make('install')

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from spack import *
class ArpackNg(Package):
"""
ARPACK-NG is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
Important Features:
* Reverse Communication Interface.
* Single and Double Precision Real Arithmetic Versions for Symmetric,
Non-symmetric, Standard or Generalized Problems.
* Single and Double Precision Complex Arithmetic Versions for Standard or
Generalized Problems.
* Routines for Banded Matrices - Standard or Generalized Problems.
* Routines for The Singular Value Decomposition.
* Example driver routines that may be used as templates to implement numerous
Shift-Invert strategies for all problem types, data types and precision.
This project is a joint project between Debian, Octave and Scilab in order to
provide a common and maintained version of arpack.
Indeed, no single release has been published by Rice university for the last
few years and since many software (Octave, Scilab, R, Matlab...) forked it and
implemented their own modifications, arpack-ng aims to tackle this by providing
a common repository and maintained versions.
arpack-ng is replacing arpack almost everywhere.
"""
homepage = 'https://github.com/opencollab/arpack-ng'
url = 'https://github.com/opencollab/arpack-ng/archive/3.3.0.tar.gz'
version('3.3.0', 'ed3648a23f0a868a43ef44c97a21bad5')
variant('shared', default=True, description='Enables the build of shared libraries')
variant('mpi', default=False, description='Activates MPI support')
# The function pdlamch10 does not set the return variable. This is fixed upstream
# see https://github.com/opencollab/arpack-ng/issues/34
patch('pdlamch10.patch', when='@3.3:')
depends_on('blas')
depends_on('lapack')
depends_on('automake')
depends_on('autoconf')
depends_on('libtool@2.4.2:')
depends_on('mpi', when='+mpi')
def install(self, spec, prefix):
# Apparently autotools are not bootstrapped
# TODO: switch to use the CMake build in the next version
# rather than bootstrapping.
which('libtoolize')()
bootstrap = Executable('./bootstrap')
options = ['--prefix=%s' % prefix]
if '+mpi' in spec:
options.extend([
'--enable-mpi',
'F77=mpif77' #FIXME: avoid hardcoding MPI wrapper names
])
if '~shared' in spec:
options.append('--enable-shared=no')
bootstrap()
configure(*options)
make()
make('install')

15
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@@ -0,0 +1,15 @@
diff --git a/PARPACK/SRC/MPI/pdlamch10.f b/PARPACK/SRC/MPI/pdlamch10.f
index 6571da9..2882c2e 100644
--- a/PARPACK/SRC/MPI/pdlamch10.f
+++ b/PARPACK/SRC/MPI/pdlamch10.f
@@ -86,8 +86,8 @@
TEMP = TEMP1
END IF
*
- PDLAMCH = TEMP
+ PDLAMCH10 = TEMP
*
-* End of PDLAMCH
+* End of PDLAMCH10
*
END

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from spack import *
import os
import shutil
class Arpack(Package):
"""A collection of Fortran77 subroutines designed to solve large scale
eigenvalue problems.
"""
homepage = "http://www.caam.rice.edu/software/ARPACK/"
url = "http://www.caam.rice.edu/software/ARPACK/SRC/arpack96.tar.gz"
version('96', 'fffaa970198b285676f4156cebc8626e')
depends_on('blas')
depends_on('lapack')
def patch(self):
# Filter the cray makefile to make a spack one.
shutil.move('ARMAKES/ARmake.CRAY', 'ARmake.inc')
makefile = FileFilter('ARmake.inc')
# Be sure to use Spack F77 wrapper
makefile.filter('^FC.*', 'FC = f77')
makefile.filter('^FFLAGS.*', 'FFLAGS = -O2 -g')
# Set up some variables.
makefile.filter('^PLAT.*', 'PLAT = ')
makefile.filter('^home.*', 'home = %s' % os.getcwd())
makefile.filter('^BLASdir.*', 'BLASdir = %s' % self.spec['blas'].prefix)
makefile.filter('^LAPACKdir.*', 'LAPACKdir = %s' % self.spec['lapack'].prefix)
# build the library in our own prefix.
makefile.filter('^ARPACKLIB.*', 'ARPACKLIB = %s/libarpack.a' % os.getcwd())
def install(self, spec, prefix):
with working_dir('SRC'):
make('all')
mkdirp(prefix.lib)
install('libarpack.a', prefix.lib)

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from spack import *
class Asciidoc(Package):
""" A presentable text document format for writing articles, UNIX man
pages and other small to medium sized documents."""
homepage = "http://asciidoc.org"
url = "http://downloads.sourceforge.net/project/asciidoc/asciidoc/8.6.9/asciidoc-8.6.9.tar.gz"
version('8.6.9', 'c59018f105be8d022714b826b0be130a')
depends_on('libxml2')
depends_on('libxslt')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

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@@ -0,0 +1,17 @@
from spack import *
import os
class Astyle(Package):
"""A Free, Fast, and Small Automatic Formatter for C, C++, C++/CLI, Objective-C, C#, and Java Source Code."""
homepage = "http://astyle.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/astyle/astyle/astyle%202.04/astyle_2.04_linux.tar.gz"
version('2.04', '30b1193a758b0909d06e7ee8dd9627f6')
def install(self, spec, prefix):
with working_dir('src'):
make('-f',
join_path(self.stage.source_path,'build','clang','Makefile'),
parallel=False)
install(join_path(self.stage.source_path, 'src','bin','astyle'), self.prefix.bin)

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from spack import *
class Atk(Package):
"""ATK provides the set of accessibility interfaces that are
implemented by other toolkits and applications. Using the ATK
interfaces, accessibility tools have full access to view and
control running applications."""
homepage = "https://developer.gnome.org/atk/"
url = "http://ftp.gnome.org/pub/gnome/sources/atk/2.14/atk-2.14.0.tar.xz"
version('2.14.0', 'ecb7ca8469a5650581b1227d78051b8b')
depends_on("glib")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
from spack.util.executable import Executable
import os.path
class Atlas(Package):
"""
Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and
optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear
algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines
in the LAPACK library.
"""
homepage = "http://math-atlas.sourceforge.net/"
version('3.10.2', 'a4e21f343dec8f22e7415e339f09f6da',
url='http://downloads.sourceforge.net/project/math-atlas/Stable/3.10.2/atlas3.10.2.tar.bz2', preferred=True)
resource(name='lapack',
url='http://www.netlib.org/lapack/lapack-3.5.0.tgz',
md5='b1d3e3e425b2e44a06760ff173104bdf',
destination='spack-resource-lapack',
when='@3:')
version('3.11.34', '0b6c5389c095c4c8785fd0f724ec6825',
url='http://sourceforge.net/projects/math-atlas/files/Developer%20%28unstable%29/3.11.34/atlas3.11.34.tar.bz2/download')
variant('shared', default=True, description='Builds shared library')
provides('blas')
provides('lapack')
parallel = False
def patch(self):
# Disable thread check. LLNL's environment does not allow
# disabling of CPU throttling in a way that ATLAS actually
# understands.
filter_file(r'^\s+if \(thrchk\) exit\(1\);', 'if (0) exit(1);',
'CONFIG/src/config.c')
# TODO: investigate a better way to add the check back in
# TODO: using, say, MSRs. Or move this to a variant.
def install(self, spec, prefix):
options = []
if '+shared' in spec:
options.append('--shared')
# Lapack resource
lapack_stage = self.stage[1]
lapack_tarfile = os.path.basename(lapack_stage.fetcher.url)
lapack_tarfile_path = join_path(lapack_stage.path, lapack_tarfile)
options.append('--with-netlib-lapack-tarfile=%s' % lapack_tarfile_path)
with working_dir('spack-build', create=True):
configure = Executable('../configure')
configure('--prefix=%s' % prefix, *options)
make()
make('check')
make('ptcheck')
make('time')
make("install")

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from spack import *
class Atop(Package):
"""Atop is an ASCII full-screen performance monitor for Linux"""
homepage = "http://www.atoptool.nl/index.php"
url = "http://www.atoptool.nl/download/atop-2.2-3.tar.gz"
version('2.2-3', '034dc1544f2ec4e4d2c739d320dc326d')
def install(self, spec, prefix):
make()
mkdirp(prefix.bin)
install("atop", join_path(prefix.bin, "atop"))
mkdirp(join_path(prefix.man, "man1"))
install(join_path("man", "atop.1"),
join_path(prefix.man, "man1", "atop.1"))

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from spack import *
class Autoconf(Package):
"""Autoconf -- system configuration part of autotools"""
homepage = "https://www.gnu.org/software/autoconf/"
url = "http://ftp.gnu.org/gnu/autoconf/autoconf-2.69.tar.gz"
version('2.69', '82d05e03b93e45f5a39b828dc9c6c29b')
version('2.62', '6c1f3b3734999035d77da5024aab4fbd')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Automaded(Package):
"""AutomaDeD (Automata-based Debugging for Dissimilar parallel
tasks) is a tool for automatic diagnosis of performance and
correctness problems in MPI applications. It creates
control-flow models of each MPI process and, when a failure
occurs, these models are leveraged to find the origin of
problems automatically. MPI calls are intercepted (using
wrappers) to create the models. When an MPI application hangs,
AutomaDeD creates a progress-dependence graph that helps
finding the process (or group of processes) that caused the hang.
"""
homepage = "https://github.com/llnl/AutomaDeD"
url = "https://github.com/llnl/AutomaDeD/archive/v1.0.tar.gz"
version('1.0', '16a3d4def2c4c77d0bc4b21de8b3ab03')
depends_on('mpi')
depends_on('boost')
depends_on('callpath')
def install(self, spec, prefix):
cmake("-DSTATE_TRACKER_WITH_CALLPATH=ON", *std_cmake_args)
make()
make("install")

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@@ -0,0 +1,18 @@
from spack import *
class Automake(Package):
"""Automake -- make file builder part of autotools"""
homepage = "http://www.gnu.org/software/automake/"
url = "http://ftp.gnu.org/gnu/automake/automake-1.14.tar.gz"
version('1.15', '716946a105ca228ab545fc37a70df3a3')
version('1.14.1', 'd052a3e884631b9c7892f2efce542d75')
version('1.11.6', '0286dc30295b62985ca51919202ecfcc')
depends_on('autoconf')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

20
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@@ -0,0 +1,20 @@
from spack import *
class Bash(Package):
"""The GNU Project's Bourne Again SHell."""
homepage = "https://www.gnu.org/software/bash/"
url = "ftp://ftp.gnu.org/gnu/bash/bash-4.3.tar.gz"
version('4.3', '81348932d5da294953e15d4814c74dd1')
depends_on('readline')
def install(self, spec, prefix):
configure('--prefix=%s' % prefix,
'--with-curses',
'--with-installed-readline=%s' % spec['readline'].prefix)
make()
make("tests")
make("install")

17
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@@ -0,0 +1,17 @@
from spack import *
class Bear(Package):
"""Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems."""
homepage = "https://github.com/rizsotto/Bear"
url = "https://github.com/rizsotto/Bear/archive/2.0.4.tar.gz"
version('2.0.4', 'fd8afb5e8e18f8737ba06f90bd77d011')
depends_on("cmake")
depends_on("python")
def install(self, spec, prefix):
cmake('.', *std_cmake_args)
make("all")
make("install")

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@@ -0,0 +1,27 @@
from spack import *
from glob import glob
class Bib2xhtml(Package):
"""bib2xhtml is a program that converts BibTeX files into HTML."""
homepage = "http://www.spinellis.gr/sw/textproc/bib2xhtml/"
url='http://www.spinellis.gr/sw/textproc/bib2xhtml/bib2xhtml-v3.0-15-gf506.tar.gz'
version('3.0-15-gf506', 'a26ba02fe0053bbbf2277bdf0acf8645')
def url_for_version(self, v):
return ('http://www.spinellis.gr/sw/textproc/bib2xhtml/bib2xhtml-v%s.tar.gz' % v)
def install(self, spec, prefix):
# Add the bst include files to the install directory
bst_include = join_path(prefix.share, 'bib2xhtml')
mkdirp(bst_include)
for bstfile in glob('html-*bst'):
install(bstfile, bst_include)
# Install the script and point it at the user's favorite perl
# and the bst include directory.
mkdirp(prefix.bin)
install('bib2xhtml', prefix.bin)
filter_file(r'#!/usr/bin/perl',
'#!/usr/bin/env BSTINPUTS=%s perl' % bst_include,
join_path(prefix.bin, 'bib2xhtml'))

52
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@@ -0,0 +1,52 @@
--- binutils-2.24/libiberty/Makefile.in 2013-11-04 10:33:40.000000000 -0500
+++ binutils-2.24-fixes/libiberty/Makefile.in 2014-10-17 16:22:31.413655000 -0400
@@ -66,6 +66,7 @@
MAKEOVERRIDES =
TARGETLIB = ./libiberty.a
+TARGETLIBPIC = ./libiberty_pic.a
TESTLIB = ./testlib.a
LIBOBJS = @LIBOBJS@
@@ -355,27 +356,27 @@
# since it will be passed the multilib flags.
MULTIOSDIR = `$(CC) $(CFLAGS) -print-multi-os-directory`
install_to_libdir: all
- if test -n "${target_header_dir}"; then \
- ${mkinstalldirs} $(DESTDIR)$(libdir)/$(MULTIOSDIR); \
- $(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n; \
- ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n ;$(RANLIB) $(TARGETLIB)n ); \
- mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB); \
- case "${target_header_dir}" in \
- /*) thd=${target_header_dir};; \
- *) thd=${includedir}/${target_header_dir};; \
- esac; \
- ${mkinstalldirs} $(DESTDIR)$${thd}; \
- for h in ${INSTALLED_HEADERS}; do \
- ${INSTALL_DATA} $$h $(DESTDIR)$${thd}; \
- done; \
- fi
+ ${mkinstalldirs} $(DESTDIR)$(libdir)/$(MULTIOSDIR); \
+ $(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n; \
+ $(INSTALL_DATA) pic/$(TARGETLIB) $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC)n; \
+ ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n ;$(RANLIB) $(TARGETLIB)n ); \
+ ( cd $(DESTDIR)$(libdir)/$(MULTIOSDIR) ; chmod 644 $(TARGETLIBPIC)n ;$(RANLIB) $(TARGETLIBPIC)n ); \
+ mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIB); \
+ mv -f $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC)n $(DESTDIR)$(libdir)/$(MULTIOSDIR)/$(TARGETLIBPIC); \
+ ${mkinstalldirs} $(DESTDIR)$${includedir}; \
+ for h in ${INSTALLED_HEADERS}; do \
+ ${INSTALL_DATA} $$h $(DESTDIR)$${includedir}; \
+ done;
@$(MULTIDO) $(FLAGS_TO_PASS) multi-do DO=install
install_to_tooldir: all
${mkinstalldirs} $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)
$(INSTALL_DATA) $(TARGETLIB) $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB)n
+ $(INSTALL_DATA) pic/$(TARGETLIB) $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC)n
( cd $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR) ; chmod 644 $(TARGETLIB)n; $(RANLIB) $(TARGETLIB)n )
+ ( cd $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR) ; chmod 644 $(TARGETLIBPIC)n; $(RANLIB) $(TARGETLIBPIC)n )
mv -f $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB)n $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIB)
+ mv -f $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC)n $(DESTDIR)$(tooldir)/lib/$(MULTIOSDIR)/$(TARGETLIBPIC)
@$(MULTIDO) $(FLAGS_TO_PASS) multi-do DO=install
# required-list was used when building a shared bfd/opcodes/libiberty

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@@ -0,0 +1,26 @@
--- old/opcodes/cr16-dis.c 2014-10-14 03:32:04.000000000 -0400
+++ new/opcodes/cr16-dis.c 2016-01-14 21:54:26.000000000 -0500
@@ -78,7 +78,7 @@
REG_ARG_TYPE;
/* Current opcode table entry we're disassembling. */
-const inst *instruction;
+extern const inst *instruction;
/* Current instruction we're disassembling. */
ins cr16_currInsn;
/* The current instruction is read into 3 consecutive words. */
@@ -86,12 +86,12 @@
/* Contains all words in appropriate order. */
ULONGLONG cr16_allWords;
/* Holds the current processed argument number. */
-int processing_argument_number;
+extern int processing_argument_number;
/* Nonzero means a IMM4 instruction. */
int imm4flag;
/* Nonzero means the instruction's original size is
incremented (escape sequence is used). */
-int size_changed;
+extern int size_changed;
/* Print the constant expression length. */

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@@ -0,0 +1,47 @@
from spack import *
class Binutils(Package):
"""GNU binutils, which contain the linker, assembler, objdump and others"""
homepage = "http://www.gnu.org/software/binutils/"
url="https://ftp.gnu.org/gnu/binutils/binutils-2.25.tar.bz2"
version('2.26', '64146a0faa3b411ba774f47d41de239f')
version('2.25', 'd9f3303f802a5b6b0bb73a335ab89d66')
version('2.24', 'e0f71a7b2ddab0f8612336ac81d9636b')
version('2.23.2', '4f8fa651e35ef262edc01d60fb45702e')
version('2.20.1', '2b9dc8f2b7dbd5ec5992c6e29de0b764')
depends_on('m4')
depends_on('flex')
depends_on('bison')
# Add a patch that creates binutils libiberty_pic.a which is preferred by OpenSpeedShop and cbtf-krell
variant('krellpatch', default=False, description="build with openspeedshop based patch.")
variant('gold', default=True, description="build the gold linker")
patch('binutilskrell-2.24.patch', when='@2.24+krellpatch')
patch('cr16.patch')
variant('libiberty', default=False, description='Also install libiberty.')
def install(self, spec, prefix):
configure_args = [
'--prefix=%s' % prefix,
'--disable-dependency-tracking',
'--enable-interwork',
'--enable-multilib',
'--enable-shared',
'--enable-64-bit-bfd',
'--enable-targets=all',
'--with-sysroot=/']
if '+gold' in spec:
configure_args.append('--enable-gold')
if '+libiberty' in spec:
configure_args.append('--enable-install-libiberty')
configure(*configure_args)
make()
make("install")

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@@ -0,0 +1,17 @@
from spack import *
class Bison(Package):
"""Bison is a general-purpose parser generator that converts
an annotated context-free grammar into a deterministic LR or
generalized LR (GLR) parser employing LALR(1) parser tables."""
homepage = "http://www.gnu.org/software/bison/"
url = "http://ftp.gnu.org/gnu/bison/bison-3.0.tar.gz"
version('3.0.4', 'a586e11cd4aff49c3ff6d3b6a4c9ccf8')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

15
var/spack/repos/builtin/packages/blitz/package.py Normal file
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@@ -0,0 +1,15 @@
from spack import *
class Blitz(Package):
"""N-dimensional arrays for C++"""
homepage = "http://github.com/blitzpp/blitz"
url = "https://github.com/blitzpp/blitz/tarball/1.0.0"
version('1.0.0', '9f040b9827fe22228a892603671a77af')
# No dependencies
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

34
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@@ -0,0 +1,34 @@
--- a/libs/container/src/pool_resource.cpp 2015-11-06 12:49:55.000000000 -0800
+++ b/libs/container/src/pool_resource.cpp 2015-12-22 07:54:36.202131121 -0800
@@ -32,11 +32,11 @@
class pool_data_t
: public block_slist_base<>
{
- typedef block_slist_base<> block_slist_base;
+ typedef block_slist_base<> block_slist_base_t;
public:
explicit pool_data_t(std::size_t initial_blocks_per_chunk)
- : block_slist_base(), next_blocks_per_chunk(initial_blocks_per_chunk)
+ : block_slist_base_t(), next_blocks_per_chunk(initial_blocks_per_chunk)
{ slist_algo::init_header(&free_slist); }
void *allocate_block() BOOST_NOEXCEPT
@@ -59,7 +59,7 @@
void release(memory_resource &upstream)
{
slist_algo::init_header(&free_slist);
- this->block_slist_base::release(upstream);
+ this->block_slist_base_t::release(upstream);
next_blocks_per_chunk = pool_options_minimum_max_blocks_per_chunk;
}
@@ -72,7 +72,7 @@
//Minimum block size is at least max_align, so all pools allocate sizes that are multiple of max_align,
//meaning that all blocks are max_align-aligned.
- char *p = static_cast<char *>(block_slist_base::allocate(blocks_per_chunk*pool_block, mr));
+ char *p = static_cast<char *>(block_slist_base_t::allocate(blocks_per_chunk*pool_block, mr));
//Create header types. This is no-throw
for(std::size_t i = 0, max = blocks_per_chunk; i != max; ++i){

239
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@@ -0,0 +1,239 @@
from spack import *
import spack
import sys
import os
import sys
class Boost(Package):
"""Boost provides free peer-reviewed portable C++ source
libraries, emphasizing libraries that work well with the C++
Standard Library.
Boost libraries are intended to be widely useful, and usable
across a broad spectrum of applications. The Boost license
encourages both commercial and non-commercial use.
"""
homepage = "http://www.boost.org"
url = "http://downloads.sourceforge.net/project/boost/boost/1.55.0/boost_1_55_0.tar.bz2"
list_url = "http://sourceforge.net/projects/boost/files/boost/"
list_depth = 2
version('1.60.0', '65a840e1a0b13a558ff19eeb2c4f0cbe')
version('1.59.0', '6aa9a5c6a4ca1016edd0ed1178e3cb87')
version('1.58.0', 'b8839650e61e9c1c0a89f371dd475546')
version('1.57.0', '1be49befbdd9a5ce9def2983ba3e7b76')
version('1.56.0', 'a744cf167b05d72335f27c88115f211d')
version('1.55.0', 'd6eef4b4cacb2183f2bf265a5a03a354')
version('1.54.0', '15cb8c0803064faef0c4ddf5bc5ca279')
version('1.53.0', 'a00d22605d5dbcfb4c9936a9b35bc4c2')
version('1.52.0', '3a855e0f919107e0ca4de4d84ad3f750')
version('1.51.0', '4b6bd483b692fd138aef84ed2c8eb679')
version('1.50.0', '52dd00be775e689f55a987baebccc462')
version('1.49.0', '0d202cb811f934282dea64856a175698')
version('1.48.0', 'd1e9a7a7f532bb031a3c175d86688d95')
version('1.47.0', 'a2dc343f7bc7f83f8941e47ed4a18200')
version('1.46.1', '7375679575f4c8db605d426fc721d506')
version('1.46.0', '37b12f1702319b73876b0097982087e0')
version('1.45.0', 'd405c606354789d0426bc07bea617e58')
version('1.44.0', 'f02578f5218f217a9f20e9c30e119c6a')
version('1.43.0', 'dd49767bfb726b0c774f7db0cef91ed1')
version('1.42.0', '7bf3b4eb841b62ffb0ade2b82218ebe6')
version('1.41.0', '8bb65e133907db727a2a825c5400d0a6')
version('1.40.0', 'ec3875caeac8c52c7c129802a8483bd7')
version('1.39.0', 'a17281fd88c48e0d866e1a12deecbcc0')
version('1.38.0', '5eca2116d39d61382b8f8235915cb267')
version('1.37.0', '8d9f990bfb7e83769fa5f1d6f065bc92')
version('1.36.0', '328bfec66c312150e4c2a78dcecb504b')
version('1.35.0', 'dce952a7214e72d6597516bcac84048b')
version('1.34.1', '2d938467e8a448a2c9763e0a9f8ca7e5')
version('1.34.0', 'ed5b9291ffad776f8757a916e1726ad0')
default_install_libs = set(['atomic',
'chrono',
'date_time',
'filesystem',
'graph',
'iostreams',
'locale',
'log',
'math',
'program_options',
'random',
'regex',
'serialization',
'signals',
'system',
'test',
'thread',
'wave'])
# mpi/python are not installed by default because they pull in many
# dependencies and/or because there is a great deal of customization
# possible (and it would be difficult to choose sensible defaults)
default_noinstall_libs = set(['mpi', 'python'])
all_libs = default_install_libs | default_noinstall_libs
for lib in all_libs:
variant(lib, default=(lib not in default_noinstall_libs),
description="Compile with {0} library".format(lib))
variant('debug', default=False, description='Switch to the debug version of Boost')
variant('shared', default=True, description="Additionally build shared libraries")
variant('multithreaded', default=True, description="Build multi-threaded versions of libraries")
variant('singlethreaded', default=True, description="Build single-threaded versions of libraries")
variant('icu_support', default=False, description="Include ICU support (for regex/locale libraries)")
depends_on('icu', when='+icu_support')
depends_on('python', when='+python')
depends_on('mpi', when='+mpi')
depends_on('bzip2', when='+iostreams')
depends_on('zlib', when='+iostreams')
# Patch fix from https://svn.boost.org/trac/boost/ticket/11856
patch('boost_11856.patch', when='@1.60.0%gcc@4.4.7')
def url_for_version(self, version):
"""Handle Boost's weird URLs, which write the version two different ways."""
parts = [str(p) for p in Version(version)]
dots = ".".join(parts)
underscores = "_".join(parts)
return "http://downloads.sourceforge.net/project/boost/boost/%s/boost_%s.tar.bz2" % (
dots, underscores)
def determine_toolset(self, spec):
if spec.satisfies("=darwin-x86_64"):
return 'darwin'
toolsets = {'g++': 'gcc',
'icpc': 'intel',
'clang++': 'clang'}
for cc, toolset in toolsets.iteritems():
if cc in self.compiler.cxx_names:
return toolset
# fallback to gcc if no toolset found
return 'gcc'
def determine_bootstrap_options(self, spec, withLibs, options):
boostToolsetId = self.determine_toolset(spec)
options.append('--with-toolset=%s' % boostToolsetId)
options.append("--with-libraries=%s" % ','.join(withLibs))
if '+python' in spec:
options.append('--with-python=%s' %
join_path(spec['python'].prefix.bin, 'python'))
with open('user-config.jam', 'w') as f:
compiler_wrapper = join_path(spack.build_env_path, 'c++')
f.write("using {0} : : {1} ;\n".format(boostToolsetId,
compiler_wrapper))
if '+mpi' in spec:
f.write('using mpi : %s ;\n' %
join_path(spec['mpi'].prefix.bin, 'mpicxx'))
if '+python' in spec:
f.write('using python : %s : %s ;\n' %
(spec['python'].version,
join_path(spec['python'].prefix.bin, 'python')))
def determine_b2_options(self, spec, options):
if '+debug' in spec:
options.append('variant=debug')
else:
options.append('variant=release')
if '+icu_support' in spec:
options.extend(['-s', 'ICU_PATH=%s' % spec['icu'].prefix])
if '+iostreams' in spec:
options.extend([
'-s', 'BZIP2_INCLUDE=%s' % spec['bzip2'].prefix.include,
'-s', 'BZIP2_LIBPATH=%s' % spec['bzip2'].prefix.lib,
'-s', 'ZLIB_INCLUDE=%s' % spec['zlib'].prefix.include,
'-s', 'ZLIB_LIBPATH=%s' % spec['zlib'].prefix.lib,
])
linkTypes = ['static']
if '+shared' in spec:
linkTypes.append('shared')
threadingOpts = []
if '+multithreaded' in spec:
threadingOpts.append('multi')
if '+singlethreaded' in spec:
threadingOpts.append('single')
if not threadingOpts:
raise RuntimeError("At least one of {singlethreaded, multithreaded} must be enabled")
options.extend([
'toolset=%s' % self.determine_toolset(spec),
'link=%s' % ','.join(linkTypes),
'--layout=tagged'])
return threadingOpts
def install(self, spec, prefix):
# On Darwin, Boost expects the Darwin libtool. However, one of the
# dependencies may have pulled in Spack's GNU libtool, and these two are
# not compatible. We thus create a symlink to Darwin's libtool and add
# it at the beginning of PATH.
if sys.platform == 'darwin':
newdir = os.path.abspath('darwin-libtool')
mkdirp(newdir)
force_symlink('/usr/bin/libtool', join_path(newdir, 'libtool'))
env['PATH'] = newdir + ':' + env['PATH']
withLibs = list()
for lib in Boost.all_libs:
if "+{0}".format(lib) in spec:
withLibs.append(lib)
if not withLibs:
# if no libraries are specified for compilation, then you dont have
# to configure/build anything, just copy over to the prefix directory.
src = join_path(self.stage.source_path, 'boost')
mkdirp(join_path(prefix, 'include'))
dst = join_path(prefix, 'include', 'boost')
install_tree(src, dst)
return
# Remove libraries that the release version does not support
if not spec.satisfies('@1.54.0:'):
withLibs.remove('log')
if not spec.satisfies('@1.53.0:'):
withLibs.remove('atomic')
if not spec.satisfies('@1.48.0:'):
withLibs.remove('locale')
if not spec.satisfies('@1.47.0:'):
withLibs.remove('chrono')
if not spec.satisfies('@1.43.0:'):
withLibs.remove('random')
# to make Boost find the user-config.jam
env['BOOST_BUILD_PATH'] = './'
bootstrap = Executable('./bootstrap.sh')
bootstrap_options = ['--prefix=%s' % prefix]
self.determine_bootstrap_options(spec, withLibs, bootstrap_options)
bootstrap(*bootstrap_options)
# b2 used to be called bjam, before 1.47 (sigh)
b2name = './b2' if spec.satisfies('@1.47:') else './bjam'
b2 = Executable(b2name)
b2_options = ['-j', '%s' % make_jobs]
threadingOpts = self.determine_b2_options(spec, b2_options)
# In theory it could be done on one call but it fails on
# Boost.MPI if the threading options are not separated.
for threadingOpt in threadingOpts:
b2('install', 'threading=%s' % threadingOpt, *b2_options)
# The shared libraries are not installed correctly on Darwin; correct this
if (sys.platform == 'darwin') and ('+shared' in spec):
fix_darwin_install_name(prefix.lib)

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@@ -0,0 +1,16 @@
--- Makefile 2015-02-26 10:50:00.000000000 -0800
+++ Makefile.new 2015-07-29 18:03:59.891357399 -0700
@@ -22,10 +22,10 @@
#
INC =
-GCC_PREFIX = $(shell dirname `which gcc`)
+GCC_PREFIX =
GCC_SUFFIX =
-CC = $(GCC_PREFIX)/gcc$(GCC_SUFFIX)
-CPP = $(GCC_PREFIX)/g++$(GCC_SUFFIX)
+CC = cc
+CPP = c++
CXX = $(CPP)
HEADERS = $(wildcard *.h)
BOWTIE_MM = 1

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@@ -0,0 +1,24 @@
from spack import *
from glob import glob
class Bowtie2(Package):
"""Description"""
homepage = "bowtie-bio.sourceforge.net/bowtie2/index.shtml"
version('2.2.5','51fa97a862d248d7ee660efc1147c75f', url = "http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip")
patch('bowtie2-2.5.patch',when='@2.2.5', level=0)
def install(self, spec, prefix):
make()
mkdirp(prefix.bin)
for bow in glob("bowtie2*"):
install(bow, prefix.bin)
# install('bowtie2',prefix.bin)
# install('bowtie2-align-l',prefix.bin)
# install('bowtie2-align-s',prefix.bin)
# install('bowtie2-build',prefix.bin)
# install('bowtie2-build-l',prefix.bin)
# install('bowtie2-build-s',prefix.bin)
# install('bowtie2-inspect',prefix.bin)
# install('bowtie2-inspect-l',prefix.bin)
# install('bowtie2-inspect-s',prefix.bin)

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from spack import *
class Boxlib(Package):
"""BoxLib, a software framework for massively parallel
block-structured adaptive mesh refinement (AMR) codes."""
homepage = "https://ccse.lbl.gov/BoxLib/"
url = "https://ccse.lbl.gov/pub/Downloads/BoxLib.git";
# TODO: figure out how best to version this. No tags in the repo!
version('master', git='https://ccse.lbl.gov/pub/Downloads/BoxLib.git')
depends_on('mpi')
def install(self, spec, prefix):
args = std_cmake_args
args += ['-DCCSE_ENABLE_MPI=1',
'-DCMAKE_C_COMPILER=%s' % which('mpicc'),
'-DCMAKE_CXX_COMPILER=%s' % which('mpicxx'),
'-DCMAKE_Fortran_COMPILER=%s' % which('mpif90')]
cmake('.', *args)
make()
make("install")

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from spack import *
class Bzip2(Package):
"""bzip2 is a freely available, patent free high-quality data
compressor. It typically compresses files to within 10% to 15%
of the best available techniques (the PPM family of statistical
compressors), whilst being around twice as fast at compression
and six times faster at decompression.
"""
homepage = "http://www.bzip.org"
url = "http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz"
version('1.0.6', '00b516f4704d4a7cb50a1d97e6e8e15b')
def patch(self):
mf = FileFilter('Makefile-libbz2_so')
mf.filter(r'^CC=gcc', 'CC=cc')
# Below stuff patches the link line to use RPATHs on Mac OS X.
if 'darwin' in self.spec.architecture:
v = self.spec.version
v1, v2, v3 = (v.up_to(i) for i in (1,2,3))
mf.filter('$(CC) -shared -Wl,-soname -Wl,libbz2.so.{0} -o libbz2.so.{1} $(OBJS)'.format(v2, v3),
'$(CC) -dynamiclib -Wl,-install_name -Wl,@rpath/libbz2.{0}.dylib -current_version {1} -compatibility_version {2} -o libbz2.{3}.dylib $(OBJS)'.format(v1, v2, v3, v3), string=True)
mf.filter('$(CC) $(CFLAGS) -o bzip2-shared bzip2.c libbz2.so.{0}'.format(v3),
'$(CC) $(CFLAGS) -o bzip2-shared bzip2.c libbz2.{0}.dylib'.format(v3), string=True)
mf.filter('rm -f libbz2.so.{0}'.format(v2),
'rm -f libbz2.{0}.dylib'.format(v2), string=True)
mf.filter('ln -s libbz2.so.{0} libbz2.so.{1}'.format(v3, v2),
'ln -s libbz2.{0}.dylib libbz2.{1}.dylib'.format(v3, v2), string=True)
def install(self, spec, prefix):
make('-f', 'Makefile-libbz2_so')
make('clean')
make("install", "PREFIX=%s" % prefix)
install('bzip2-shared', join_path(prefix.bin, 'bzip2'))
v1, v2, v3 = (self.spec.version.up_to(i) for i in (1,2,3))
if 'darwin' in self.spec.architecture:
lib = 'libbz2.dylib'
lib1, lib2, lib3 = ('libbz2.{0}.dylib'.format(v) for v in (v1, v2, v3))
else:
lib = 'libbz2.so'
lib1, lib2, lib3 = ('libbz2.so.{0}'.format(v) for v in (v1, v2, v3))
install(lib3, join_path(prefix.lib, lib3))
with working_dir(prefix.lib):
for l in (lib, lib1, lib2):
symlink(lib3, l)
with working_dir(prefix.bin):
force_remove('bunzip2', 'bzcat')
symlink('bzip2', 'bunzip2')
symlink('bzip2', 'bzcat')

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from spack import *
class Cairo(Package):
"""Cairo is a 2D graphics library with support for multiple output devices."""
homepage = "http://cairographics.org"
url = "http://cairographics.org/releases/cairo-1.14.0.tar.xz"
version('1.14.0', 'fc3a5edeba703f906f2241b394f0cced')
depends_on("libpng")
depends_on("glib")
depends_on("pixman")
depends_on("fontconfig@2.10.91:") # Require newer version of fontconfig.
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--disable-trace", # can cause problems with libiberty
"--enable-tee")
make()
make("install")

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from spack import *
class Caliper(Package):
"""
Caliper is a generic context annotation system. It gives programmers the
ability to provide arbitrary program context information to (performance)
tools at runtime.
"""
homepage = "https://github.com/LLNL/Caliper"
url = ""
version('master', git='ssh://git@github.com:LLNL/Caliper.git')
variant('mpi', default=False, description='Enable MPI function wrappers.')
depends_on('libunwind')
depends_on('papi')
depends_on('mpi', when='+mpi')
def install(self, spec, prefix):
with working_dir('build', create=True):
cmake('..', *std_cmake_args)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Callpath(Package):
"""Library for representing callpaths consistently in
distributed-memory performance tools."""
homepage = "https://github.com/llnl/callpath"
url = "https://github.com/llnl/callpath/archive/v1.0.1.tar.gz"
version('1.0.2', 'b1994d5ee7c7db9d27586fc2dcf8f373')
version('1.0.1', '0047983d2a52c5c335f8ba7f5bab2325')
depends_on("libelf")
depends_on("libdwarf")
depends_on("dyninst")
depends_on("adept-utils")
depends_on("mpi")
def install(self, spec, prefix):
# TODO: offer options for the walker used.
cmake('.', "-DCALLPATH_WALKER=dyninst", *std_cmake_args)
make()
make("install")

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from spack import *
import os
class Cblas(Package):
"""The BLAS (Basic Linear Algebra Subprograms) are routines that
provide standard building blocks for performing basic vector and
matrix operations."""
homepage = "http://www.netlib.org/blas/_cblas/"
# tarball has no version, but on the date below, this MD5 was correct.
version('2015-06-06', '1e8830f622d2112239a4a8a83b84209a',
url='http://www.netlib.org/blas/blast-forum/cblas.tgz')
depends_on('blas')
parallel = False
def patch(self):
mf = FileFilter('Makefile.in')
mf.filter('^BLLIB =.*', 'BLLIB = %s/libblas.a' % self.spec['blas'].prefix.lib)
mf.filter('^CC =.*', 'CC = cc')
mf.filter('^FC =.*', 'FC = f90')
def install(self, spec, prefix):
make('all')
mkdirp(prefix.lib)
mkdirp(prefix.include)
# Rename the generated lib file to libcblas.a
install('./lib/cblas_LINUX.a', '%s/libcblas.a' % prefix.lib)
install('./include/cblas.h','%s' % prefix.include)
install('./include/cblas_f77.h','%s' % prefix.include)

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################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 59 Temple
# Place, Suite 330, Boston, MA 02111-1307 USA
################################################################################
from spack import *
class CbtfArgonavis(Package):
"""CBTF Argo Navis project contains the CUDA collector and supporting
libraries that was done as a result of a DOE SBIR grant."""
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-argonavis-1.5.tar.gz"
#version('1.5', '1f7f6512f55409ed2135cfceabe26b82')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-argonavis/cbtf-argonavis')
depends_on("cmake@3.0.2:")
depends_on("papi")
depends_on("cbtf")
depends_on("cbtf-krell")
depends_on("cuda")
parallel = False
def install(self, spec, prefix):
# Look for package installation information in the cbtf and cbtf-krell prefixes
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix)
# FIXME, hard coded for testing purposes, we will alter when the external package feature is available
cuda_prefix_path = "/usr/local/cudatoolkit-6.0"
cupti_prefix_path = "/usr/local/cudatoolkit-6.0/extras/CUPTI"
with working_dir('CUDA'):
with working_dir('build', create=True):
cmake('..',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCUDA_INSTALL_PATH=%s' % cuda_prefix_path,
'-DCUDA_ROOT=%s' % cuda_prefix_path,
'-DCUPTI_ROOT=%s' % cupti_prefix_path,
'-DCUDA_DIR=%s' % cuda_prefix_path,
'-DPAPI_ROOT=%s' % spec['papi'].prefix,
'-DCBTF_PREFIX=%s' % spec['cbtf'].prefix,
*std_cmake_args)
make("clean")
make()
make("install")

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################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 59 Temple
# Place, Suite 330, Boston, MA 02111-1307 USA
################################################################################
from spack import *
class CbtfKrell(Package):
"""CBTF Krell project contains the Krell Institute contributions to the CBTF project.
These contributions include many performance data collectors and support
libraries as well as some example tools that drive the data collection at
HPC levels of scale."""
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# optional mirror access template
#url = "file:/g/g24/jeg/cbtf-krell-1.5.tar.gz"
#version('1.5', 'b13f6df6a93c44149d977773dd776d2f')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-krell/cbtf-krell')
# Dependencies for cbtf-krell
# For binutils service
depends_on("binutils@2.24+krellpatch")
# collectionTool
depends_on("boost@1.50.0")
depends_on("dyninst@8.2.1")
depends_on("mrnet@4.1.0:+lwthreads")
depends_on("xerces-c@3.1.1:")
depends_on("cbtf")
# for services and collectors
depends_on("libmonitor+krellpatch")
depends_on("libunwind")
depends_on("papi")
# MPI Installations
# These have not worked either for build or execution, commenting out for now
#depends_on("openmpi")
#depends_on("mvapich2@2.0")
#depends_on("mpich")
parallel = False
def install(self, spec, prefix):
# Add in paths for finding package config files that tell us where to find these packages
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['dyninst'].prefix)
# FIXME - hard code path until external package support is available
# Need to change this path and/or add additional paths for MPI experiment support on different platforms
#openmpi_prefix_path = "/opt/openmpi-1.8.2"
#mvapich_prefix_path = "/usr/local/tools/mvapich-gnu"
# Other possibilities, they will need a -DMVAPICH_DIR=, etc clause in the cmake command to be recognized
# mvapich_prefix_path = "<mvapich install path>"
# mvapich2_prefix_path = "<mvapich2 install path>"
# mpich2_prefix_path = "<mpich2 install path>"
# mpich_prefix_path = "<mpich install path>"
# mpt_prefix_path = "<mpt install path>"
# Add in paths for cuda if requested via the cuda variant
# FIXME - hard code path until external package support is available
#if '+cuda' in spec:
# cuda_prefix_path = "/usr/local/cuda-6.0"
# cupti_prefix_path = "/usr/local/cuda-6.0/extras/CUPTI"
#else:
# cuda_prefix_path = ""
# cupti_prefix_path = ""
#'-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix,
#'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix,
#'-DMPICH_DIR=%s' % spec['mpich'].prefix,
#'-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64,
#'-DOPENMPI_DIR=%s' % openmpi_prefix_path,
#'-DMVAPICH_DIR=%s' % mvapich_prefix_path,
#'-DLIB_SUFFIX=64',
#'-DCUDA_DIR=%s' % cuda_prefix_path,
#'-DCUPTI_DIR=%s' % cupti_prefix_path,
# Build cbtf-krell with cmake
with working_dir('build_cbtf_krell', create=True):
cmake('..',
'-DCMAKE_BUILD_TYPE=Debug',
'-DCMAKE_INSTALL_PREFIX=%s' % prefix,
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DBINUTILS_DIR=%s' % spec['binutils'].prefix,
'-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix,
'-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix,
'-DPAPI_DIR=%s' % spec['papi'].prefix,
'-DBOOST_DIR=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DDYNINST_DIR=%s' % spec['dyninst'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
*std_cmake_args)
make("clean")
make()
make("install")

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################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 59 Temple
# Place, Suite 330, Boston, MA 02111-1307 USA
################################################################################
from spack import *
class CbtfLanl(Package):
"""CBTF LANL project contains a memory tool and data center type system command monitoring tool."""
homepage = "http://sourceforge.net/p/cbtf/wiki/Home/"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-lanl-1.5.tar.gz"
#version('1.5', 'c3f78f967b0a42c6734ce4be0e602426')
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-lanl/cbtf-lanl')
# Dependencies for cbtf-krell
depends_on("boost@1.50")
depends_on("mrnet@4.1.0:+lwthreads")
depends_on("xerces-c@3.1.1:")
depends_on("cbtf")
depends_on("cbtf-krell")
parallel = False
def install(self, spec, prefix):
# Add in paths for finding package config files that tell us where to find these packages
cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix)
with working_dir('build', create=True):
cmake('..',
'-DCBTF_DIR=%s' % spec['cbtf'].prefix,
'-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'),
*std_cmake_args)
make("clean")
make()
make("install")

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################################################################################
# Copyright (c) 2015 Krell Institute. All Rights Reserved.
#
# This program is free software; you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation; either version 2 of the License, or (at your option) any later
# version.
#
# This program is distributed in the hope that it will be useful, but WITHOUT
# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# this program; if not, write to the Free Software Foundation, Inc., 59 Temple
# Place, Suite 330, Boston, MA 02111-1307 USA
################################################################################
from spack import *
class Cbtf(Package):
"""CBTF project contains the base code for CBTF that supports creating components,
component networks and the support to connect these components and component
networks into sequential and distributed network tools."""
homepage = "http://sourceforge.net/p/cbtf/wiki/Home"
# Mirror access template example
#url = "file:/g/g24/jeg/cbtf-1.5.tar.gz"
#version('1.6', '1ca88a8834759c4c74452cb97fe7b70a')
# Use when the git repository is available
version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf/cbtf')
depends_on("cmake")
#depends_on("boost@1.42.0:")
depends_on("boost@1.50.0")
depends_on("mrnet@4.1.0+lwthreads")
depends_on("xerces-c@3.1.1:")
depends_on("libxml2")
parallel = False
def install(self, spec, prefix):
with working_dir('build', create=True):
# Boost_NO_SYSTEM_PATHS Set to TRUE to suppress searching
# in system paths (or other locations outside of BOOST_ROOT
# or BOOST_INCLUDEDIR). Useful when specifying BOOST_ROOT.
# Defaults to OFF.
cmake('..',
'--debug-output',
'-DBoost_NO_SYSTEM_PATHS=TRUE',
'-DXERCESC_DIR=%s' % spec['xerces-c'].prefix,
'-DBOOST_ROOT=%s' % spec['boost'].prefix,
'-DMRNET_DIR=%s' % spec['mrnet'].prefix,
'-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake'),
*std_cmake_args)
make("clean")
make()
make("install")

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--- old/sandbox/CMakeLists.txt
+++ new/sandbox/CMakeLists.txt
@@ -4,9 +4,11 @@
add_executable(sandbox_json sandbox_json.cpp)
add_executable(sandbox_rtti sandbox_rtti.cpp)
+if(Boost_FOUND)
add_executable(sandbox_vs sandbox_vs.cpp)
target_link_libraries(sandbox_vs sandbox_vs_dll)
include_directories(sandbox_shared_lib)
+endif(Boost_FOUND)
if(Boost_FOUND)
add_executable(performance performance.cpp)
--- old/include/cereal/types/common.hpp
+++ new/include/cereal/types/common.hpp
@@ -106,14 +106,16 @@
t = reinterpret_cast<typename common_detail::is_enum<T>::type const &>( value );
}
+#ifndef CEREAL_ENABLE_RAW_POINTER_SERIALIZATION
//! Serialization for raw pointers
/*! This exists only to throw a static_assert to let users know we don't support raw pointers. */
template <class Archive, class T> inline
void CEREAL_SERIALIZE_FUNCTION_NAME( Archive &, T * & )
{
static_assert(cereal::traits::detail::delay_static_assert<T>::value,
"Cereal does not support serializing raw pointers - please use a smart pointer");
}
+#endif
//! Serialization for C style arrays
template <class Archive, class T> inline

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from spack import *
import os
import shutil
class Cereal(Package):
"""cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone."""
homepage = "http://uscilab.github.io/cereal/"
url = "https://github.com/USCiLab/cereal/archive/v1.1.2.tar.gz"
version('1.1.2', '34d4ad174acbff005c36d4d10e48cbb9')
version('1.1.1', '0ceff308c38f37d5b5f6df3927451c27')
version('1.1.0', '9f2d5f72e935c54f4c6d23e954ce699f')
version('1.0.0', 'd1bacca70a95cec0ddbff68b0871296b')
version('0.9.1', '8872d4444ff274ce6cd1ed364d0fc0ad')
patch("Werror.patch")
depends_on("cmake @2.6.2:")
def install(self, spec, prefix):
# Don't use -Werror
filter_file(r'-Werror', '', 'CMakeLists.txt')
# configure
# Boost is only used for self-tests, which we are not running (yet?)
cmake('.', '-DCMAKE_DISABLE_FIND_PACKAGE_Boost=TRUE', *std_cmake_args)
# Build
make()
# Install
shutil.rmtree(join_path(prefix, 'doc'), ignore_errors=True)
shutil.rmtree(join_path(prefix, 'include'), ignore_errors=True)
shutil.rmtree(join_path(prefix, 'lib'), ignore_errors=True)
shutil.copytree('doc', join_path(prefix, 'doc'), symlinks=True)
shutil.copytree('include', join_path(prefix, 'include'), symlinks=True)
# Create empty directory to avoid linker warnings later
os.mkdir(join_path(prefix, 'lib'))

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from spack import *
class Cfitsio(Package):
"""
CFITSIO is a library of C and Fortran subroutines for reading and writing
data files in FITS (Flexible Image Transport System) data format.
"""
homepage = 'http://heasarc.gsfc.nasa.gov/fitsio/'
version('3.370', 'abebd2d02ba5b0503c633581e3bfa116')
def url_for_version(self, v):
url = 'ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/cfitsio{0}.tar.gz'
return url.format(str(v).replace('.', ''))
def install(self, spec, prefix):
configure('--prefix=' + prefix)
make()
make('install')

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cgal(Package):
"""
CGAL is a software project that provides easy access to efficient and reliable geometric algorithms in the form of
a C++ library. CGAL is used in various areas needing geometric computation, such as geographic information systems,
computer aided design, molecular biology, medical imaging, computer graphics, and robotics.
"""
homepage = 'http://www.cgal.org/'
url = 'https://github.com/CGAL/cgal/archive/releases/CGAL-4.7.tar.gz'
version('4.7', '4826714810f3b4c65cac96b90fb03b67')
version('4.6.3', 'e8ee2ecc8d2b09b94a121c09257b576d')
# Installation instructions : http://doc.cgal.org/latest/Manual/installation.html
variant('shared', default=True, description='Enables the build of shared libraries')
variant('debug', default=False, description='Builds a debug version of the libraries')
depends_on('boost')
depends_on('mpfr')
depends_on('gmp')
depends_on('zlib')
depends_on('cmake')
# FIXME : Qt5 dependency missing (needs Qt5 and OpenGL)
# FIXME : Optional third party libraries missing
def install(self, spec, prefix):
options = []
options.extend(std_cmake_args)
# CGAL supports only Release and Debug build type. Any other build type will raise an error at configure time
if '+debug' in spec:
options.append('-DCMAKE_BUILD_TYPE:STRING=Debug')
else:
options.append('-DCMAKE_BUILD_TYPE:STRING=Release')
if '+shared' in spec:
options.append('-DBUILD_SHARED_LIBS:BOOL=ON')
else:
options.append('-DBUILD_SHARED_LIBS:BOOL=OFF')
build_directory = join_path(self.stage.path, 'spack-build')
source_directory = self.stage.source_path
with working_dir(build_directory, create=True):
cmake(source_directory, *options)
make()
make("install")

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from spack import *
class Cgm(Package):
"""The Common Geometry Module, Argonne (CGMA) is a code library
which provides geometry functionality used for mesh generation and
other applications."""
homepage = "http://trac.mcs.anl.gov/projects/ITAPS/wiki/CGM"
url = "http://ftp.mcs.anl.gov/pub/fathom/cgm13.1.1.tar.gz"
version('13.1.1', '4e8dbc4ba8f65767b29f985f7a23b01f')
version('13.1.0', 'a6c7b22660f164ce893fb974f9cb2028')
version('13.1' , '95f724bda04919fc76818a5b7bc0b4ed')
depends_on("mpi")
def patch(self):
filter_file('^(#include "CGMParallelConventions.h")',
'//\1',
'geom/parallel/CGMReadParallel.cpp')
def install(self, spec, prefix):
configure("--with-mpi",
"--prefix=%s" % prefix,
"CFLAGS=-static",
"CXXFLAGS=-static",
"FCFLAGS=-static")
make()
make("install")

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from spack import *
from spack.util.environment import *
class Cityhash(Package):
homepage = "https://github.com/google/cityhash"
url = "https://github.com/google/cityhash"
version('2013-07-31', git='https://github.com/google/cityhash.git', commit='8af9b8c2b889d80c22d6bc26ba0df1afb79a30db')
version('master', branch='master', git='https://github.com/google/cityhash.git')
def install(self, spec, prefix):
configure('--enable-sse4.2', '--prefix=%s' % prefix)
make()
make("install")

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from spack import *
class Cleverleaf(Package):
"""
CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive
Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National
Laboratory. The primary goal of CleverLeaf is to evaluate the application of
AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf.
"""
homepage = "http://uk-mac.github.io/CleverLeaf/"
url = "https://github.com/UK-MAC/CleverLeaf/tarball/master"
version('develop', git='https://github.com/UK-MAC/CleverLeaf_ref.git', branch='develop')
depends_on("SAMRAI@3.8.0:")
depends_on("hdf5+mpi")
depends_on("boost")
def install(self, spec, prefix):
cmake(*std_cmake_args)
make()
make("install")

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from spack import *
class Cloog(Package):
"""CLooG is a free software and library to generate code for
scanning Z-polyhedra. That is, it finds a code (e.g. in C,
FORTRAN...) that reaches each integral point of one or more
parameterized polyhedra."""
homepage = "http://www.cloog.org"
url = "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.1.tar.gz"
list_url = "http://www.bastoul.net/cloog/pages/download"
version('0.18.1', 'e34fca0540d840e5d0f6427e98c92252')
version('0.18.0', 'be78a47bd82523250eb3e91646db5b3d')
version('0.17.0', '0aa3302c81f65ca62c114e5264f8a802')
depends_on("gmp")
depends_on("isl")
def install(self, spec, prefix):
configure("--prefix=%s" % prefix,
"--with-osl=no",
"--with-isl=%s" % spec['isl'].prefix,
"--with-gmp=%s" % spec['gmp'].prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cmake(Package):
"""A cross-platform, open-source build system. CMake is a family of
tools designed to build, test and package software."""
homepage = 'https://www.cmake.org'
url = 'https://cmake.org/files/v3.4/cmake-3.4.3.tar.gz'
version('3.5.2', '701386a1b5ec95f8d1075ecf96383e02')
version('3.5.1', 'ca051f4a66375c89d1a524e726da0296')
version('3.5.0', '33c5d09d4c33d4ffcc63578a6ba8777e')
version('3.4.3', '4cb3ff35b2472aae70f542116d616e63')
version('3.4.0', 'cd3034e0a44256a0917e254167217fc8')
version('3.3.1', '52638576f4e1e621fed6c3410d3a1b12')
version('3.0.2', 'db4c687a31444a929d2fdc36c4dfb95f')
version('2.8.10.2', '097278785da7182ec0aea8769d06860c')
variant('ncurses', default=True, description='Enables the build of the ncurses gui')
variant('openssl', default=True, description="Enables CMake's OpenSSL features")
variant('qt', default=False, description='Enables the build of cmake-gui')
variant('doc', default=False, description='Enables the generation of html and man page documentation')
depends_on('ncurses', when='+ncurses')
depends_on('openssl', when='+openssl')
depends_on('qt', when='+qt')
depends_on('python@2.7.11:', when='+doc')
depends_on('py-sphinx', when='+doc')
def url_for_version(self, version):
"""Handle CMake's version-based custom URLs."""
return 'https://cmake.org/files/v%s/cmake-%s.tar.gz' % (version.up_to(2), version)
def validate(self, spec):
"""
Checks if incompatible versions of qt were specified
:param spec: spec of the package
:raises RuntimeError: in case of inconsistencies
"""
if '+qt' in spec and spec.satisfies('^qt@5.4.0'):
msg = 'qt-5.4.0 has broken CMake modules.'
raise RuntimeError(msg)
def install(self, spec, prefix):
# Consistency check
self.validate(spec)
# configure, build, install:
options = ['--prefix=%s' % prefix]
options.append('--parallel=%s' % str(make_jobs))
if '+qt' in spec:
options.append('--qt-gui')
if '+doc' in spec:
options.append('--sphinx-html')
options.append('--sphinx-man')
if '+openssl' in spec:
options.append('--')
options.append('-DCMAKE_USE_OPENSSL=ON')
configure(*options)
make()
make('install')

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from spack import *
class Cmocka(Package):
"""Unit-testing framework in pure C"""
homepage = "https://cmocka.org/"
url = "https://cmocka.org/files/1.0/cmocka-1.0.1.tar.xz"
version('1.0.1', 'ed861e501a21a92b2af63e466df2015e')
parallel = False
def install(self, spec, prefix):
with working_dir('spack-build', create=True):
cmake('..', *std_cmake_args)
make()
make("install")

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from spack import *
class Coreutils(Package):
"""The GNU Core Utilities are the basic file, shell and text
manipulation utilities of the GNU operating system. These are
the core utilities which are expected to exist on every
operating system.
"""
homepage = "http://www.gnu.org/software/coreutils/"
url = "http://ftp.gnu.org/gnu/coreutils/coreutils-8.23.tar.xz"
version('8.23', 'abed135279f87ad6762ce57ff6d89c41')
def install(self, spec, prefix):
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Cppcheck(Package):
"""A tool for static C/C++ code analysis."""
homepage = "http://cppcheck.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/cppcheck/cppcheck/1.68/cppcheck-1.68.tar.bz2"
version('1.68', 'c015195f5d61a542f350269030150708')
def install(self, spec, prefix):
# cppcheck does not have a configure script
make()
# manually install the final cppcheck binary
mkdirp(prefix.bin)
install('cppcheck', prefix.bin)

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from spack import *
class Cram(Package):
"""Cram runs many small MPI jobs inside one large MPI job."""
homepage = "https://github.com/llnl/cram"
url = "http://github.com/llnl/cram/archive/v1.0.1.tar.gz"
version('1.0.1', 'c73711e945cf5dc603e44395f6647f5e')
extends('python')
depends_on("mpi")
def install(self, spec, prefix):
cmake(".", *std_cmake_args)
make()
make("install")

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import glob
from spack import *
class Cryptopp(Package):
"""Crypto++ is an open-source C++ library of cryptographic schemes. The
library supports a number of different cryptography algorithms, including
authenticated encryption schemes (GCM, CCM), hash functions (SHA-1, SHA2),
public-key encryption (RSA, DSA), and a few obsolete/historical encryption
algorithms (MD5, Panama)."""
homepage = "http://www.cryptopp.com"
base_url = "http://www.cryptopp.com"
version('5.6.3', '3c5b70e2ec98b7a24988734446242d07')
version('5.6.2', '7ed022585698df48e65ce9218f6c6a67')
def install(self, spec, prefix):
make()
mkdirp(prefix.include)
for hfile in glob.glob('*.h*'):
install(hfile, prefix.include)
mkdirp(prefix.lib)
install('libcryptopp.a', prefix.lib)
def url_for_version(self, version):
version_string = str(version).replace('.', '')
return '%s/cryptopp%s.zip' % (Cryptopp.base_url, version_string)

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from spack import *
class Cscope(Package):
"""Cscope is a developer's tool for browsing source code."""
homepage = "http://http://cscope.sourceforge.net/"
url = "http://downloads.sourceforge.net/project/cscope/cscope/15.8b/cscope-15.8b.tar.gz"
version('15.8b', '8f9409a238ee313a96f9f87fe0f3b176')
# Can be configured to use flex (not necessary)
# ./configure --with-flex
def install(self, spec, prefix):
configure('--prefix=%s' % prefix)
make()
make("install")

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##############################################################################
# Copyright (c) 2013, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License (as published by
# the Free Software Foundation) version 2.1 dated February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with this program; if not, write to the Free Software Foundation,
# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Cube(Package):
"""
Cube the profile viewer for Score-P and Scalasca profiles. It displays a multi-dimensional performance space
consisting of the dimensions:
- performance metric
- call path
- system resource
"""
homepage = "http://www.scalasca.org/software/cube-4.x/download.html"
url = "http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.3.tar.gz"
version('4.3.3', '07e109248ed8ffc7bdcce614264a2909',
url='http://apps.fz-juelich.de/scalasca/releases/cube/4.3/dist/cube-4.3.3.tar.gz')
version('4.2.3', '8f95b9531f5a8f8134f279c2767c9b20',
url="http://apps.fz-juelich.de/scalasca/releases/cube/4.2/dist/cube-4.2.3.tar.gz")
# TODO : add variant that builds GUI on top of Qt
def install(self, spec, prefix):
configure_args = ["--prefix=%s" % prefix,
"--without-paraver",
"--without-gui"]
configure(*configure_args)
make(parallel=False)
make("install", parallel=False)

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from spack import *
from glob import glob
import os
class Cuda(Package):
"""CUDA is a parallel computing platform and programming model invented by
NVIDIA. It enables dramatic increases in computing performance by harnessing
the power of the graphics processing unit (GPU).
Note: NVIDIA does not provide a download URL for CUDA so you will need to
download it yourself. Go to https://developer.nvidia.com/cuda-downloads
and select your Operating System, Architecture, Distribution, and Version.
For the Installer Type, select runfile and click Download. Spack will search
your current directory for this file. Alternatively, add this file to a
mirror so that Spack can find it. For instructions on how to set up a mirror,
see http://software.llnl.gov/spack/mirrors.html
Note: This package does not currently install the drivers necessary to run
CUDA. These will need to be installed manually. See:
http://docs.nvidia.com/cuda/cuda-getting-started-guide-for-linux for details."""
homepage = "http://www.nvidia.com/object/cuda_home_new.html"
version('7.5.18', '4b3bcecf0dfc35928a0898793cf3e4c6', expand=False,
url="file://%s/cuda_7.5.18_linux.run" % os.getcwd())
version('6.5.14', '90b1b8f77313600cc294d9271741f4da', expand=False,
url="file://%s/cuda_6.5.14_linux_64.run" % os.getcwd())
def install(self, spec, prefix):
runfile = glob(os.path.join(self.stage.path, 'cuda*.run'))[0]
chmod = which('chmod')
chmod('+x', runfile)
runfile = which(runfile)
# Note: NVIDIA does not officially support many newer versions of compilers.
# For example, on CentOS 6, you must use GCC 4.4.7 or older. See:
# http://docs.nvidia.com/cuda/cuda-installation-guide-linux/#system-requirements
# for details.
runfile(
'--silent', # disable interactive prompts
'--verbose', # create verbose log file
'--toolkit', # install CUDA Toolkit
'--toolkitpath=%s' % prefix
)

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from spack import *
class Curl(Package):
"""cURL is an open source command line tool and library for
transferring data with URL syntax"""
homepage = "http://curl.haxx.se"
url = "http://curl.haxx.se/download/curl-7.46.0.tar.bz2"
version('7.47.1', '9ea3123449439bbd960cd25cf98796fb')
version('7.46.0', '9979f989a2a9930d10f1b3deeabc2148')
version('7.45.0', '62c1a352b28558f25ba6209214beadc8')
version('7.44.0', '6b952ca00e5473b16a11f05f06aa8dae')
version('7.43.0', '11bddbb452a8b766b932f859aaeeed39')
version('7.42.1', '296945012ce647b94083ed427c1877a8')
depends_on("openssl")
depends_on("zlib")
def install(self, spec, prefix):
configure('--prefix=%s' % prefix,
'--with-zlib=%s' % spec['zlib'].prefix,
'--with-ssl=%s' % spec['openssl'].prefix)
make()
make("install")

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from spack import *
import os
class Czmq(Package):
""" A C interface to the ZMQ library """
homepage = "http://czmq.zeromq.org"
url = "https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz"
version('3.0.2', '23e9885f7ee3ce88d99d0425f52e9be1', url='https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz')
depends_on('libtool')
depends_on('automake')
depends_on('autoconf')
depends_on('pkg-config')
depends_on('zeromq')
def install(self, spec, prefix):
bash = which("bash")
# Work around autogen.sh oddities
# bash("./autogen.sh")
mkdirp("config")
autoreconf = which("autoreconf")
autoreconf("--install", "--verbose", "--force",
"-I", "config",
"-I", os.path.join(spec['pkg-config'].prefix, "share", "aclocal"),
"-I", os.path.join(spec['automake'].prefix, "share", "aclocal"),
"-I", os.path.join(spec['libtool'].prefix, "share", "aclocal"),
)
configure("--prefix=%s" % prefix)
make()
make("install")

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from spack import *
class Dakota(Package):
"""
The Dakota toolkit provides a flexible, extensible interface between analysis codes and iterative systems
analysis methods. Dakota contains algorithms for:
- optimization with gradient and non gradient-based methods;
- uncertainty quantification with sampling, reliability, stochastic expansion, and epistemic methods;
- parameter estimation with nonlinear least squares methods;
- sensitivity/variance analysis with design of experiments and parameter study methods.
These capabilities may be used on their own or as components within advanced strategies such as hybrid optimization,
surrogate-based optimization, mixed integer nonlinear programming, or optimization under uncertainty.
"""
homepage = 'https://dakota.sandia.gov/'
url = 'https://dakota.sandia.gov/sites/default/files/distributions/public/dakota-6.3-public.src.tar.gz'
_url_str = 'https://dakota.sandia.gov/sites/default/files/distributions/public/dakota-{version}-public.src.tar.gz'
version('6.3', '05a58d209fae604af234c894c3f73f6d')
variant('debug', default=False, description='Builds a debug version of the libraries')
variant('shared', default=True, description='Enables the build of shared libraries')
variant('mpi', default=True, description='Activates MPI support')
depends_on('blas')
depends_on('lapack')
depends_on('mpi', when='+mpi')
depends_on('python')
depends_on('boost')
def url_for_version(self, version):
return Dakota._url_str.format(version=version)
def install(self, spec, prefix):
options = []
options.extend(std_cmake_args)
options.extend(['-DCMAKE_BUILD_TYPE:STRING=%s' % ('Debug' if '+debug' in spec else 'Release'),
'-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if '+shared' in spec else 'OFF')])
if '+mpi' in spec:
options.extend(['-DDAKOTA_HAVE_MPI:BOOL=ON',
'-DMPI_CXX_COMPILER:STRING=%s' % join_path(spec['mpi'].prefix.bin, 'mpicxx')])
build_directory = join_path(self.stage.path, 'spack-build')
source_directory = self.stage.source_path
with working_dir(build_directory, create=True):
cmake(source_directory, *options)
make()
make("install")

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from spack import *
class Damselfly(Package):
"""Damselfly is a model-based parallel network simulator."""
homepage = "https://github.com/llnl/damselfly"
url = "https://github.com/llnl/damselfly"
version('1.0', '05cf7e2d8ece4408c0f2abb7ab63fd74c0d62895', git='https://github.com/llnl/damselfly.git', tag='v1.0')
def install(self, spec, prefix):
with working_dir('spack-build', create=True):
cmake('-DCMAKE_BUILD_TYPE=release', '..', *std_cmake_args)
make()
make('install')

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