zhangyiss/spack
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

r-factoextra and dependents

Browse Source
This commit is contained in:
Tom Merrick 2017-05-31 15:15:06 -05:00
parent 313fedebb1
commit afbf477fd6
31 changed files with 701 additions and 21 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

6
var/spack/repos/builtin/packages/r-car/package.py
View File

@ -36,8 +36,8 @@ class RCar(RPackage):
version('2.1-4', 'a66c307e8ccf0c336ed197c0f1799565')
version('2.1-2', '0f78ad74ef7130126d319acec23951a0')
depends_on('r-mass', type=('build', 'run'))
depends_on('r-mgcv', type=('build', 'run'))
depends_on('r-nnet', type=('build', 'run'))
# depends_on('r-mass', type=('build', 'run'))
# depends_on('r-mgcv', type=('build', 'run'))
# depends_on('r-nnet', type=('build', 'run'))
depends_on('r-pbkrtest', type=('build', 'run'))
depends_on('r-quantreg', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-class/package.py
View File

@ -35,4 +35,4 @@ class RClass(RPackage):
version('7.3-14', '6a21dd206fe4ea29c55faeb65fb2b71e')
depends_on('r-mass', type=('build','run'))
# depends_on('r-mass', type=('build','run'))

42
var/spack/repos/builtin/packages/r-dendextend/package.py Normal file
View File

@ -0,0 +1,42 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RDendextend(RPackage):
"""dendextend: Extending 'Dendrogram' Functionality in R"""
homepage = "https://CRAN.R-project.org/package=dendextend"
url = "https://cran.r-project.org/src/contrib/dendextend_1.5.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/dendextend"
version('1.5.2', '1134869d94005727c63cf3037e2f1bbf')
depends_on('r@3.0.0:')
depends_on('r-magrittr@1.0.1:', type=('build', 'run'))
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-fpc', type=('build', 'run'))
depends_on('r-whisker', type=('build', 'run'))
depends_on('r-viridis', type=('build', 'run'))

35
var/spack/repos/builtin/packages/r-diptest/package.py Normal file
View File

@ -0,0 +1,35 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RDiptest(RPackage):
"""diptest: Hartigan's Dip Test Statistic for Unimodality - Corrected"""
homepage = "https://CRAN.R-project.org/package=diptest"
url = "https://cran.r-project.org/src/contrib/diptest_0.75-7.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/diptest"
version('0.75-7', '1a4a958fda763f7c99cb485dbe5954ab')

2
var/spack/repos/builtin/packages/r-e1071/package.py
View File

@ -36,4 +36,4 @@ class RE1071(RPackage):
version('1.6-7', 'd109a7e3dd0c905d420e327a9a921f5a')
depends_on('r-class', type=('build', 'run'))
# depends_on('r-class', type=('build', 'run'))

47
var/spack/repos/builtin/packages/r-factoextra/package.py Normal file
View File

@ -0,0 +1,47 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RFactoextra(RPackage):
"""factoextra: Extract and Visualize the Results of Multivariate Data
Analyses"""
homepage = "http://www.sthda.com/english/rpkgs/factoextra"
url = "https://cran.r-project.org/src/contrib/factoextra_1.0.4.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/factoextra"
version('1.0.4', 'aa4c81ca610f17fdee0c9f3379e35429')
depends_on('r@3.1.0:')
depends_on('r-ggplot2@2.2.0:', type=('build', 'run'))
depends_on('r-abind', type=('build', 'run'))
# depends_on('r-cluster', type=('build', 'run'))
depends_on('r-dendextend', type=('build', 'run'))
depends_on('r-factominer', type=('build', 'run'))
depends_on('r-ggpubr', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))
depends_on('r-ggrepel', type=('build', 'run'))
depends_on('r-tidyr', type=('build', 'run'))

46
var/spack/repos/builtin/packages/r-factominer/package.py Normal file
View File

@ -0,0 +1,46 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RFactominer(RPackage):
"""FactoMineR: Multivariate Exploratory Data Analysis and Data Mining"""
homepage = "http://factominer.free.fr"
url = "https://cran.r-project.org/src/contrib/FactoMineR_1.35.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/FactoMineR"
version('1.35', 'bef076181ce942016114dd7a6f5c2348')
depends_on('r@3.3.0:')
depends_on('r-car', type=('build', 'run'))
# depends_on('r-cluster', type=('build', 'run'))
depends_on('r-ellipse', type=('build', 'run'))
depends_on('r-flashclust', type=('build', 'run'))
# depends_on('r-lattice', type=('build', 'run'))
depends_on('r-leaps', type=('build', 'run'))
# depends_on('r-mass', type=('build', 'run'))
depends_on('r-scatterplot3d', type=('build', 'run'))
depends_on('r-knitr', type=('build', 'run'))

37
var/spack/repos/builtin/packages/r-flashclust/package.py Normal file
View File

@ -0,0 +1,37 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RFlashclust(RPackage):
"""flashClust: Implementation of optimal hierarchical clustering"""
homepage = "https://CRAN.R-project.org/package=flashClust"
url = "https://cran.r-project.org/src/contrib/flashClust_1.01-2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/flashClust"
version('1.01-2', '23409aeeef98bf35d0b3d5dd755fdeff')
depends_on('r@2.3.0:')

40
var/spack/repos/builtin/packages/r-flexmix/package.py Normal file
View File

@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RFlexmix(RPackage):
"""flexmix: Flexible Mixture Modeling"""
homepage = "https://CRAN.R-project.org/package=flexmix"
url = "https://cran.r-project.org/src/contrib/flexmix_2.3-14.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/flexmix"
version('2.3-14', '5be4f7764e6a697f4586e60c2bf6e960')
depends_on('r@2.15.0:')
# depends_on('r-lattice', type=('build', 'run'))
depends_on('r-modeltools@0.2-16:', type=('build', 'run'))
# depends_on('r-nnet', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-formatr/package.py
View File

@ -39,7 +39,7 @@ class RFormatr(RPackage):
version('1.4', '98b9b64b2785b35f9df403e1aab6c73c')
depends_on('r-codetools', type=('build', 'run'))
# depends_on('r-codetools', type=('build', 'run'))
depends_on('r-shiny', type=('build', 'run'))
depends_on('r-testit', type=('build', 'run'))
# depends_on('r-knitr', type=('build', 'run')) - mutual dependency

48
var/spack/repos/builtin/packages/r-fpc/package.py Normal file
View File

@ -0,0 +1,48 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RFpc(RPackage):
"""fpc: Flexible Procedures for Clustering"""
homepage = "http://www.homepages.ucl.ac.uk/~ucakche"
url = "https://cran.r-project.org/src/contrib/fpc_2.1-10.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/fpc"
version('2.1-10', '75e5340e416cd13d7751e06f1c07866b')
depends_on('r@2.0.0:')
# depends_on('r-mass', type=('build', 'run'))
# depends_on('r-cluster', type=('build', 'run'))
depends_on('r-mclust', type=('build', 'run'))
depends_on('r-flexmix', type=('build', 'run'))
depends_on('r-prabclus', type=('build', 'run'))
# depends_on('r-class', type=('build', 'run'))
depends_on('r-diptest', type=('build', 'run'))
depends_on('r-mvtnorm', type=('build', 'run'))
depends_on('r-robustbase', type=('build', 'run'))
depends_on('r-kernlab', type=('build', 'run'))
depends_on('r-trimcluster', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-ggplot2/package.py
View File

@ -45,7 +45,7 @@ class RGgplot2(RPackage):
depends_on('r-digest', type=('build', 'run'))
depends_on('r-gtable@0.1.1:', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
# depends_on('r-mass', type=('build', 'run'))
depends_on('r-plyr@1.7.1:', type=('build', 'run'))
depends_on('r-reshape2', type=('build', 'run'))
depends_on('r-scales@0.4.1', type=('build', 'run'))

41
var/spack/repos/builtin/packages/r-ggpubr/package.py Normal file
View File

@ -0,0 +1,41 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RGgpubr(RPackage):
"""ggpubr: 'ggplot2' Based Publication Ready Plots"""
homepage = "http://www.sthda.com/english/rpkgs/ggpubr"
url = "https://cran.r-project.org/src/contrib/ggpubr_0.1.2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/ggpubr"
version('0.1.2', '42a5749ae44121597ef511a7424429d1')
depends_on('r@3.1.0:')
depends_on('r-ggplot2', type=('build', 'run'))
depends_on('r-ggrepel', type=('build', 'run'))
depends_on('r-ggsci', type=('build', 'run'))
depends_on('r-plyr', type=('build', 'run'))

40
var/spack/repos/builtin/packages/r-ggrepel/package.py Normal file
View File

@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RGgrepel(RPackage):
"""ggrepel: Repulsive Text and Label Geoms for 'ggplot2'"""
homepage = "http://github.com/slowkow/ggrepel"
url = "https://cran.r-project.org/src/contrib/ggrepel_0.6.5.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/ggrepel"
version('0.6.5', '7e2732cd4840efe2dc9e4bc689cf1ee5')
depends_on('r@3.0.0:')
depends_on('r-ggplot2@2.0.0:', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))
depends_on('r-scales@0.3.0:', type=('build', 'run'))

40
var/spack/repos/builtin/packages/r-ggsci/package.py Normal file
View File

@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RGgsci(RPackage):
"""ggsci: Scientific Journal and Sci-Fi Themed Color Palettes for
'ggplot2'"""
homepage = "https://github.com/road2stat/ggsci"
url = "https://cran.r-project.org/src/contrib/ggsci_2.4.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/ggsci"
version('2.4', '8e5dc2fcf84352cacbb91363e26c7175')
depends_on('r@3.0.2:')
depends_on('r-scales', type=('build', 'run'))
depends_on('r-ggplot2@2.0.0:', type=('build', 'run'))

35
var/spack/repos/builtin/packages/r-leaps/package.py Normal file
View File

@ -0,0 +1,35 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RLeaps(RPackage):
"""leaps: Regression Subset Selection"""
homepage = "https://CRAN.R-project.org/package=leaps"
url = "https://cran.r-project.org/src/contrib/leaps_3.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/leaps"
version('3.0', '30823138890680e0493d1491c8f43edc')

8
var/spack/repos/builtin/packages/r-lme4/package.py
View File

@ -37,10 +37,10 @@ class RLme4(RPackage):
version('1.1-12', 'da8aaebb67477ecb5631851c46207804')
depends_on('r-matrix', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
depends_on('r-lattice', type=('build', 'run'))
depends_on('r-nlme', type=('build', 'run'))
# depends_on('r-matrix', type=('build', 'run'))
# depends_on('r-mass', type=('build', 'run'))
# depends_on('r-lattice', type=('build', 'run'))
# depends_on('r-nlme', type=('build', 'run'))
depends_on('r-minqa', type=('build', 'run'))
depends_on('r-nloptr', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-matrix/package.py
View File

@ -36,4 +36,4 @@ class RMatrix(RPackage):
version('1.2-8', '4a6406666bf97d3ec6b698eea5d9c0f5')
version('1.2-6', 'f545307fb1284861e9266c4e9712c55e')
depends_on('r-lattice', type=('build', 'run'))
# depends_on('r-lattice', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-matrixmodels/package.py
View File

@ -35,4 +35,4 @@ class RMatrixmodels(RPackage):
version('0.4-1', '65b3ab56650c62bf1046a3eb1f1e19a0')
depends_on('r-matrix', type=('build', 'run'))
# depends_on('r-matrix', type=('build', 'run'))

38
var/spack/repos/builtin/packages/r-mclust/package.py Normal file
View File

@ -0,0 +1,38 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RMclust(RPackage):
"""mclust: Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation"""
homepage = "http://www.stat.washington.edu/mclust"
url = "https://cran.r-project.org/src/contrib/mclust_5.3.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/mclust"
version('5.3', '74aac9fccdfc78373ce733c1a09176ef')
depends_on('r@3.0.0:')

4
var/spack/repos/builtin/packages/r-mgcv/package.py
View File

@ -38,5 +38,5 @@ class RMgcv(RPackage):
version('1.8-16', '4c1d85e0f80b017bccb4b63395842911')
version('1.8-13', '30607be3aaf44b13bd8c81fc32e8c984')
depends_on('r-nlme', type=('build', 'run'))
depends_on('r-matrix', type=('build', 'run'))
# depends_on('r-nlme', type=('build', 'run'))
# depends_on('r-matrix', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-nlme/package.py
View File

@ -35,4 +35,4 @@ class RNlme(RPackage):
version('3.1-130', '1935d6e308a8018ed8e45d25c8731288')
version('3.1-128', '3d75ae7380bf123761b95a073eb55008')
depends_on('r-lattice', type=('build', 'run'))
# depends_on('r-lattice', type=('build', 'run'))

4
var/spack/repos/builtin/packages/r-pbkrtest/package.py
View File

@ -42,5 +42,5 @@ class RPbkrtest(RPackage):
depends_on('r@3.2.3:')
depends_on('r-lme4@1.1.10:', type=('build', 'run'))
depends_on('r-matrix@1.2.3:', type=('build', 'run'))
depends_on('r-mass', type=('build', 'run'))
# depends_on('r-matrix@1.2.3:', type=('build', 'run'))
# depends_on('r-mass', type=('build', 'run'))

40
var/spack/repos/builtin/packages/r-prabclus/package.py Normal file
View File

@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RPrabclus(RPackage):
"""prabclus: Functions for Clustering of Presence-Absence, Abundance and
Multilocus Genetic Data"""
homepage = "http://www.homepages.ucl.ac.uk/~ucakche"
url = "https://cran.r-project.org/src/contrib/prabclus_2.2-6.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/prabclus"
version('2.2-6', '7f835dcc113243e1db74aad28ce93d11')
depends_on('r@2.1.0:')
# depends_on('r-mass', type=('build', 'run'))
depends_on('r-mclust', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-quantreg/package.py
View File

@ -41,5 +41,5 @@ class RQuantreg(RPackage):
version('5.26', '1d89ed932fb4d67ae2d5da0eb8c2989f')
depends_on('r-sparsem', type=('build', 'run'))
depends_on('r-matrix', type=('build', 'run'))
# depends_on('r-matrix', type=('build', 'run'))
depends_on('r-matrixmodels', type=('build', 'run'))

2
var/spack/repos/builtin/packages/r-rcppeigen/package.py
View File

@ -47,5 +47,5 @@ class RRcppeigen(RPackage):
version('0.3.2.9.0', '14a7786882a5d9862d53c4b2217df318')
version('0.3.2.8.1', '4146e06e4fdf7f4d08db7839069d479f')
depends_on('r-matrix', type=('build', 'run'))
# depends_on('r-matrix', type=('build', 'run'))
depends_on('r-rcpp', type=('build', 'run'))

37
var/spack/repos/builtin/packages/r-scatterplot3d/package.py Normal file
View File

@ -0,0 +1,37 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RScatterplot3d(RPackage):
"""scatterplot3d: 3D Scatter Plot"""
homepage = "https://CRAN.R-project.org/package=scatterplot3d"
url = "https://cran.r-project.org/src/contrib/scatterplot3d_0.3-40.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/scatterplot3d"
version('0.3-40', '67b9ab6131d244d7fc1db39dcc911dfe')
depends_on('r@2.7.0:')

37
var/spack/repos/builtin/packages/r-trimcluster/package.py Normal file
View File

@ -0,0 +1,37 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RTrimcluster(RPackage):
"""trimcluster: Cluster analysis with trimming"""
homepage = "http://www.homepages.ucl.ac.uk/~ucakche"
url = "https://cran.r-project.org/src/contrib/trimcluster_0.1-2.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/trimcluster"
version('0.1-2', '7617920e224bd18f5b87db38a3116ec2')
depends_on('r@1.9.0:')

40
var/spack/repos/builtin/packages/r-viridis/package.py Normal file
View File

@ -0,0 +1,40 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RViridis(RPackage):
"""viridis: Default Color Maps from 'matplotlib'"""
homepage = "https://github.com/sjmgarnier/viridis"
url = "https://cran.r-project.org/src/contrib/viridis_0.4.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/viridis"
version('0.4.0', 'f874384cbedf459f6c309ddb40b354ea')
depends_on('r@2.1.0:')
depends_on('r-viridislite@0.2.0:', type=('build', 'run'))
depends_on('r-ggplot2@1.0.1:', type=('build', 'run'))
depends_on('r-gridextra', type=('build', 'run'))

37
var/spack/repos/builtin/packages/r-viridislite/package.py Normal file
View File

@ -0,0 +1,37 @@
##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RViridislite(RPackage):
"""viridisLite: Default Color Maps from 'matplotlib' (Lite Version)"""
homepage = "https://github.com/sjmgarnier/viridisLite"
url = "https://cran.r-project.org/src/contrib/viridisLite_0.2.0.tar.gz"
list_url = "https://cran.r-project.org/src/contrib/Archive/viridisLite"
version('0.2.0', '04a04415cf651a2b5f964b261896c0fb')
depends_on('r@2.1.0:')

2
var/spack/repos/builtin/packages/r-zoo/package.py
View File

@ -39,4 +39,4 @@ class RZoo(RPackage):
version('1.7-14', '8c577a7c1e535c899ab14177b1039c32')
version('1.7-13', '99521dfa4c668e692720cefcc5a1bf30')
depends_on('r-lattice', type=('build', 'run'))
# depends_on('r-lattice', type=('build', 'run'))