add alpine ascent (#6224)
* add ascent package and and deps * proper use of site_packages_dir prop * flake8 * add maitain, small updates * flake8 * flake8 * fixs for docstrings for sphinx
This commit is contained in:
Cyrus Harrison
Todd Gamblin
parent
8c458a856f
commit
b079e1dbd5
333
var/spack/repos/builtin/packages/ascent/package.py
Normal file
333
var/spack/repos/builtin/packages/ascent/package.py
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@ -0,0 +1,333 @@
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##############################################################################
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# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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import socket
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import os
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import llnl.util.tty as tty
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from os import environ as env
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def cmake_cache_entry(name, value):
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"""
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Helper that creates CMake cache entry strings used in
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'host-config' files.
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"""
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return 'set({0} "{1}" CACHE PATH "")\n\n'.format(name, value)
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class Ascent(Package):
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"""Ascent is an open source many-core capable lightweight in situ
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visualization and analysis infrastructure for multi-physics HPC
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simulations."""
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homepage = "https://github.com/Alpine-DAV/ascent"
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url = "https://github.com/Alpine-DAV/ascent"
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maintainers = ['cyrush']
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version('develop',
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git='https://github.com/Alpine-DAV/ascent.git',
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branch='develop',
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submodules=True)
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###########################################################################
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# package variants
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###########################################################################
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variant("shared", default=True, description="Build Conduit as shared libs")
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variant("cmake", default=True,
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description="Build CMake (if off, attempt to use cmake from PATH)")
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variant("mpi", default=True, description="Build Ascent MPI Support")
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# variants for python support
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variant("python", default=True, description="Build Conduit Python support")
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# variants for runtime features
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variant("vtkh", default=True,
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description="Build VTK-h filter and rendering support")
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variant("tbb", default=True, description="Build tbb support")
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variant("cuda", default=False, description="Build cuda support")
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variant("adios", default=True, description="Build Adios filter support")
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# variants for dev-tools (docs, etc)
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variant("doc", default=False, description="Build Conduit's documentation")
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###########################################################################
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# package dependencies
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###########################################################################
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depends_on("cmake", when="+cmake")
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depends_on("conduit")
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#######################
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# Python
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#######################
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# we need a shared version of python b/c linking with static python lib
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# causes duplicate state issues when running compiled python modules.
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depends_on("python+shared")
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extends("python", when="+python")
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# TODO: blas and lapack are disabled due to build
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# issues Cyrus experienced on OSX 10.11.6
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depends_on("py-numpy~blas~lapack", when="+python", type=('build', 'run'))
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#######################
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# MPI
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#######################
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depends_on("mpi", when="+mpi")
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depends_on("py-mpi4py", when="+python+mpi")
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#############################
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# TPLs for Runtime Features
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#############################
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depends_on("vtkh", when="+vtkh")
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depends_on("vtkh+cuda", when="+vtkh+cuda")
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depends_on("adios", when="+adios")
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#######################
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# Documentation related
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#######################
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depends_on("py-sphinx", when="+python+doc", type='build')
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def install(self, spec, prefix):
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"""
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Build and install Conduit.
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"""
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with working_dir('spack-build', create=True):
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host_cfg_fname = self.create_host_config(spec, prefix)
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cmake_args = []
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# if we have a static build, we need to avoid any of
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# spack's default cmake settings related to rpaths
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# (see: https://github.com/LLNL/spack/issues/2658)
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if "+shared" in spec:
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cmake_args.extend(std_cmake_args)
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else:
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for arg in std_cmake_args:
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if arg.count("RPATH") == 0:
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cmake_args.append(arg)
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cmake_args.extend(["-C", host_cfg_fname, "../src"])
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cmake(*cmake_args)
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make()
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make("install")
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# TODO also copy host_cfg_fname into install
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def create_host_config(self, spec, prefix):
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"""
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This method creates a 'host-config' file that specifies
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all of the options used to configure and build ascent.
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"""
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#######################
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# Compiler Info
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#######################
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c_compiler = env["SPACK_CC"]
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cpp_compiler = env["SPACK_CXX"]
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f_compiler = None
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if self.compiler.fc:
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# even if this is set, it may not exist so do one more sanity check
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if os.path.isfile(env["SPACK_FC"]):
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f_compiler = env["SPACK_FC"]
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#######################################################################
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# By directly fetching the names of the actual compilers we appear
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# to doing something evil here, but this is necessary to create a
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# 'host config' file that works outside of the spack install env.
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#######################################################################
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sys_type = spec.architecture
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# if on llnl systems, we can use the SYS_TYPE
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if "SYS_TYPE" in env:
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sys_type = env["SYS_TYPE"]
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##############################################
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# Find and record what CMake is used
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##############################################
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if "+cmake" in spec:
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cmake_exe = spec['cmake'].command.path
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else:
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cmake_exe = which("cmake")
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if cmake_exe is None:
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msg = 'failed to find CMake (and cmake variant is off)'
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raise RuntimeError(msg)
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cmake_exe = cmake_exe.path
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host_cfg_fname = "%s-%s-%s.cmake" % (socket.gethostname(),
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sys_type,
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spec.compiler)
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cfg = open(host_cfg_fname, "w")
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cfg.write("##################################\n")
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cfg.write("# spack generated host-config\n")
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cfg.write("##################################\n")
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cfg.write("# {0}-{1}\n".format(sys_type, spec.compiler))
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cfg.write("##################################\n\n")
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# Include path to cmake for reference
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cfg.write("# cmake from spack \n")
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cfg.write("# cmake executable path: %s\n\n" % cmake_exe)
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#######################
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# Compiler Settings
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#######################
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cfg.write("#######\n")
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cfg.write("# using %s compiler spec\n" % spec.compiler)
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cfg.write("#######\n\n")
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cfg.write("# c compiler used by spack\n")
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cfg.write(cmake_cache_entry("CMAKE_C_COMPILER", c_compiler))
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cfg.write("# cpp compiler used by spack\n")
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cfg.write(cmake_cache_entry("CMAKE_CXX_COMPILER", cpp_compiler))
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cfg.write("# fortran compiler used by spack\n")
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if f_compiler is not None:
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cfg.write(cmake_cache_entry("ENABLE_FORTRAN", "ON"))
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cfg.write(cmake_cache_entry("CMAKE_Fortran_COMPILER", f_compiler))
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else:
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cfg.write("# no fortran compiler found\n\n")
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cfg.write(cmake_cache_entry("ENABLE_FORTRAN", "OFF"))
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#######################################################################
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# Core Dependencies
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#######################################################################
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#######################
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# Conduit
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#######################
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cfg.write("# conduit from spack \n")
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cfg.write(cmake_cache_entry("CONDUIT_DIR", spec['conduit'].prefix))
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#######################################################################
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# Optional Dependencies
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#######################################################################
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#######################
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# Python
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#######################
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cfg.write("# Python Support\n")
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if "+python" in spec:
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cfg.write("# Enable python module builds\n")
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cfg.write(cmake_cache_entry("ENABLE_PYTHON", "ON"))
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cfg.write("# python from spack \n")
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cfg.write(cmake_cache_entry("PYTHON_EXECUTABLE",
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spec['python'].command.path))
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# install module to standard style site packages dir
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# so we can support spack activate
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cfg.write(cmake_cache_entry("PYTHON_MODULE_INSTALL_PREFIX",
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site_packages_dir))
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else:
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cfg.write(cmake_cache_entry("ENABLE_PYTHON", "OFF"))
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if "+doc" in spec:
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cfg.write(cmake_cache_entry("ENABLE_DOCS", "ON"))
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cfg.write("# sphinx from spack \n")
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sphinx_build_exe = join_path(spec['py-sphinx'].prefix.bin,
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"sphinx-build")
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cfg.write(cmake_cache_entry("SPHINX_EXECUTABLE", sphinx_build_exe))
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cfg.write("# doxygen from uberenv\n")
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doxygen_exe = spec['doxygen'].command.path
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cfg.write(cmake_cache_entry("DOXYGEN_EXECUTABLE", doxygen_exe))
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else:
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cfg.write(cmake_cache_entry("ENABLE_DOCS", "OFF"))
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#######################
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# MPI
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#######################
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cfg.write("# MPI Support\n")
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if "+mpi" in spec:
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cfg.write(cmake_cache_entry("ENABLE_MPI", "ON"))
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cfg.write(cmake_cache_entry("MPI_C_COMPILER", spec['mpi'].mpicc))
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cfg.write(cmake_cache_entry("MPI_CXX_COMPILER",
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spec['mpi'].mpicxx))
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cfg.write(cmake_cache_entry("MPI_Fortran_COMPILER",
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spec['mpi'].mpifc))
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else:
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cfg.write(cmake_cache_entry("ENABLE_MPI", "OFF"))
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#######################
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# CUDA
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#######################
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cfg.write("# CUDA Support\n")
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if "+cuda" in spec:
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cfg.write(cmake_cache_entry("ENABLE_CUDA", "ON"))
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else:
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cfg.write(cmake_cache_entry("ENABLE_CUDA", "OFF"))
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#######################
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# VTK-h
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#######################
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cfg.write("# vtk-h support \n")
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if "+vtkh" in spec:
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cfg.write("# tbb from spack\n")
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cfg.write(cmake_cache_entry("TBB_DIR", spec['tbb'].prefix))
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cfg.write("# vtk-m from spack\n")
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cfg.write(cmake_cache_entry("VTKM_DIR", spec['vtkm'].prefix))
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cfg.write("# vtk-h from spack\n")
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cfg.write(cmake_cache_entry("VTKH_DIR", spec['vtkh'].prefix))
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else:
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cfg.write("# vtk-h not built by spack \n")
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#######################
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# Adios
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#######################
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cfg.write("# adios support\n")
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if "+adios" in spec:
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cfg.write(cmake_cache_entry("ADIOS_DIR", spec['adios'].prefix))
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else:
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cfg.write("# adios not built by spack \n")
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cfg.write("##################################\n")
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cfg.write("# end spack generated host-config\n")
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cfg.write("##################################\n")
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cfg.close()
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host_cfg_fname = os.path.abspath(host_cfg_fname)
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tty.info("spack generated conduit host-config file: " + host_cfg_fname)
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return host_cfg_fname
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@ -28,6 +28,7 @@
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import os
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import llnl.util.tty as tty
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from os import environ as env
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def cmake_cache_entry(name, value):
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@ -52,6 +53,8 @@ class Conduit(Package):
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version('0.2.1', 'ed7358af3463ba03f07eddd6a6e626ff')
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version('0.2.0', 'a7b398d493fd71b881a217993a9a29d4')
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maintainers = ['cyrush']
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version('master',
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git='https://github.com/LLNL/conduit.git',
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branch="master",
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@ -84,12 +87,15 @@ class Conduit(Package):
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#######################
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# CMake
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#######################
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# cmake 3.8.2 is the version we recommend
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depends_on("cmake@3.8.2", when="+cmake")
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# cmake 3.8.2 or newer
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depends_on("cmake@3.8.2:", when="+cmake")
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#######################
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# Python
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#######################
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# we need a shared version of python b/c linking with static python lib
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# causes duplicate state issues when running compiled python modules.
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depends_on("python+shared")
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extends("python", when="+python")
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# TODO: blas and lapack are disabled due to build
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# issues Cyrus experienced on OSX 10.11.6
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@ -103,12 +109,12 @@ class Conduit(Package):
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# to link against shared libs.
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#
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# we are not using hdf5's mpi or fortran features.
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depends_on("hdf5~cxx~mpi~fortran", when="+shared")
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depends_on("hdf5~shared~cxx~mpi~fortran", when="~shared")
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depends_on("hdf5~cxx~mpi~fortran", when="+hdf5+shared")
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depends_on("hdf5~shared~cxx~mpi~fortran", when="+hdf5~shared")
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# we are not using silo's fortran features
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depends_on("silo~fortran", when="+shared")
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depends_on("silo~shared~fortran", when="~shared")
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depends_on("silo~fortran", when="+silo+shared")
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depends_on("silo~shared~fortran", when="+silo~shared")
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#######################
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# MPI
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@ -54,6 +54,9 @@ class IntelTbb(Package):
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provides('tbb')
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# include patch for gcc rtm options
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patch("tbb_gcc_rtm_key.patch", level=0)
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def coerce_to_spack(self, tbb_build_subdir):
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for compiler in ["icc", "gcc", "clang"]:
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fs = glob.glob(join_path(tbb_build_subdir,
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@ -0,0 +1,23 @@
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*** build/linux.gcc.inc.orig 2017-01-10 16:54:01.000000000 -0800
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--- build/linux.gcc.inc 2017-01-10 16:54:04.000000000 -0800
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***************
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*** 49,57 ****
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endif
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||||
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# gcc 4.8 and later support RTM intrinsics, but require command line switch to enable them
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! ifneq (,$(shell gcc -dumpversion | egrep "^(4\.[8-9]|[5-9])"))
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! RTM_KEY = -mrtm
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! endif
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||||
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||||
ifeq ($(cfg), release)
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CPLUS_FLAGS = $(ITT_NOTIFY) -g -O2 -DUSE_PTHREAD
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||||
--- 49,57 ----
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||||
endif
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||||
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||||
# gcc 4.8 and later support RTM intrinsics, but require command line switch to enable them
|
||||
! #ifneq (,$(shell gcc -dumpversion | egrep "^(4\.[8-9]|[5-9])"))
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||||
! # RTM_KEY = -mrtm
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||||
! #endif
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||||
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||||
ifeq ($(cfg), release)
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||||
CPLUS_FLAGS = $(ITT_NOTIFY) -g -O2 -DUSE_PTHREAD
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97
var/spack/repos/builtin/packages/vtkh/package.py
Normal file
97
var/spack/repos/builtin/packages/vtkh/package.py
Normal file
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##############################################################################
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||||
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/spack/spack
|
||||
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
|
||||
from spack import *
|
||||
|
||||
|
||||
class Vtkh(Package):
|
||||
"""VTK-h is a toolkit of scientific visualization algorithms for emerging
|
||||
processor architectures. VTK-h brings together several projects like VTK-m
|
||||
and DIY2 to provide a toolkit with hybrid parallel capabilities."""
|
||||
|
||||
homepage = "https://github.com/Alpine-DAV/vtk-h"
|
||||
url = "https://github.com/Alpine-DAV/vtk-h"
|
||||
|
||||
version('master',
|
||||
git='https://github.com/Alpine-DAV/vtk-h.git',
|
||||
branch='master',
|
||||
submodules=True)
|
||||
|
||||
maintainers = ['cyrush']
|
||||
|
||||
variant("mpi", default=True, description="build mpi support")
|
||||
variant("tbb", default=True, description="build tbb support")
|
||||
variant("cuda", default=False, description="build cuda support")
|
||||
|
||||
depends_on("cmake")
|
||||
|
||||
depends_on("mpi", when="+mpi")
|
||||
depends_on("tbb", when="+tbb")
|
||||
depends_on("cuda", when="+cuda")
|
||||
|
||||
depends_on("vtkm@master")
|
||||
depends_on("vtkm@master+tbb", when="+tbb")
|
||||
depends_on("vtkm@master+cuda", when="+cuda")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
with working_dir('spack-build', create=True):
|
||||
cmake_args = ["../src",
|
||||
"-DVTKM_DIR={0}".format(spec["vtkm"].prefix),
|
||||
"-DENABLE_TESTS=OFF",
|
||||
"-DBUILD_TESTING=OFF"]
|
||||
# mpi support
|
||||
if "+mpi" in spec:
|
||||
mpicc = spec['mpi'].mpicc
|
||||
mpicxx = spec['mpi'].mpicxx
|
||||
cmake_args.extend(["-DMPI_C_COMPILER={0}".format(mpicc),
|
||||
"-DMPI_CXX_COMPILER={0}".format(mpicxx)])
|
||||
|
||||
# tbb support
|
||||
if "+tbb" in spec:
|
||||
cmake_args.append("-DTBB_DIR={0}".format(spec["tbb"].prefix))
|
||||
|
||||
# cuda support
|
||||
if "+cuda" in spec:
|
||||
cmake_args.append("-DENABLE_CUDA=ON")
|
||||
# this fix is necessary if compiling platform has cuda, but
|
||||
# no devices (this common for front end nodes on hpc clusters)
|
||||
# we choose kepler as a lowest common denominator
|
||||
cmake_args.append("-DVTKm_CUDA_Architecture=kepler")
|
||||
|
||||
# use release, instead of release with debug symbols b/c vtkh libs
|
||||
# can overwhelm compilers with too many symbols
|
||||
for arg in std_cmake_args:
|
||||
if arg.count("CMAKE_BUILD_TYPE") == 0:
|
||||
cmake_args.extend(std_cmake_args)
|
||||
cmake_args.append("-DCMAKE_BUILD_TYPE=Release")
|
||||
cmake(*cmake_args)
|
||||
if "+cuda" in spec:
|
||||
# avoid issues with make -j and FindCuda deps
|
||||
# likely a ordering issue that needs to be resolved
|
||||
# in vtk-h
|
||||
make(parallel=False)
|
||||
else:
|
||||
make()
|
||||
make("install")
|
||||
83
var/spack/repos/builtin/packages/vtkm/package.py
Normal file
83
var/spack/repos/builtin/packages/vtkm/package.py
Normal file
@ -0,0 +1,83 @@
|
||||
##############################################################################
|
||||
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
|
||||
# Produced at the Lawrence Livermore National Laboratory.
|
||||
#
|
||||
# This file is part of Spack.
|
||||
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
|
||||
# LLNL-CODE-647188
|
||||
#
|
||||
# For details, see https://github.com/spack/spack
|
||||
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
|
||||
#
|
||||
# This program is free software; you can redistribute it and/or modify
|
||||
# it under the terms of the GNU Lesser General Public License (as
|
||||
# published by the Free Software Foundation) version 2.1, February 1999.
|
||||
#
|
||||
# This program is distributed in the hope that it will be useful, but
|
||||
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
|
||||
# conditions of the GNU Lesser General Public License for more details.
|
||||
#
|
||||
# You should have received a copy of the GNU Lesser General Public
|
||||
# License along with this program; if not, write to the Free Software
|
||||
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
|
||||
##############################################################################
|
||||
|
||||
from spack import *
|
||||
import os
|
||||
|
||||
|
||||
class Vtkm(Package):
|
||||
"""VTK-m is a toolkit of scientific visualization algorithms for emerging
|
||||
processor architectures. VTK-m supports the fine-grained concurrency for
|
||||
data analysis and visualization algorithms required to drive extreme scale
|
||||
computing by providing abstract models for data and execution that can be
|
||||
applied to a variety of algorithms across many different processor
|
||||
architectures."""
|
||||
|
||||
homepage = "https://m.vtk.org/"
|
||||
url = "https://gitlab.kitware.com/vtk/vtk-m/repository/v1.1.0/archive.tar.gz"
|
||||
|
||||
version('1.1.0', "6aab1c0885f6ffaaffcf07930873d0df")
|
||||
|
||||
version('master',
|
||||
git='https://gitlab.kitware.com/vtk/vtk-m.git',
|
||||
branch='master')
|
||||
|
||||
variant("cuda", default=False, description="build cuda support")
|
||||
variant("tbb", default=True, description="build TBB support")
|
||||
|
||||
depends_on("cmake")
|
||||
depends_on("tbb", when="+tbb")
|
||||
depends_on("cuda", when="+cuda")
|
||||
|
||||
def install(self, spec, prefix):
|
||||
with working_dir('spack-build', create=True):
|
||||
cmake_args = ["../",
|
||||
"-DVTKm_ENABLE_TESTING=OFF",
|
||||
"-DVTKm_BUILD_RENDERING=ON",
|
||||
"-DVTKm_USE_64BIT_IDS=OFF",
|
||||
"-DVTKm_USE_DOUBLE_PRECISION=ON"]
|
||||
# tbb support
|
||||
if "+tbb" in spec:
|
||||
# vtk-m detectes tbb via TBB_ROOT env var
|
||||
os.environ["TBB_ROOT"] = spec["tbb"].prefix
|
||||
cmake_args.append("-DVTKm_ENABLE_TBB=ON")
|
||||
|
||||
# cuda support
|
||||
if "+cuda" in spec:
|
||||
cmake_args.append("-DVTKm_ENABLE_CUDA=ON")
|
||||
# this fix is necessary if compiling platform has cuda, but
|
||||
# no devices (this common for front end nodes on hpc clusters)
|
||||
# we choose kepler as a lowest common denominator
|
||||
cmake_args.append("-DVTKm_CUDA_Architecture=kepler")
|
||||
|
||||
# use release, instead of release with debug symbols b/c vtkm libs
|
||||
# can overwhelm compilers with too many symbols
|
||||
for arg in std_cmake_args:
|
||||
if arg.count("CMAKE_BUILD_TYPE") == 0:
|
||||
cmake_args.extend(std_cmake_args)
|
||||
cmake_args.append("-DCMAKE_BUILD_TYPE=Release")
|
||||
cmake(*cmake_args)
|
||||
make()
|
||||
make("install")
|
||||
Loading…
Reference in New Issue
Block a user