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new builtin package: py-biobb-common (#41993)

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* new builtin package: biobb-common

* removed whitespace for the style test

* replaced ' by " for the style test

* changed import line for the style test

* Update var/spack/repos/builtin/packages/biobb-common/package.py

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Update var/spack/repos/builtin/packages/biobb-common/package.py

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Update var/spack/repos/builtin/packages/biobb-common/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* removed test

* using pypi instead of git

I hope this is declared the right way.
I tried to test it locally but I am having problems with a dependency (openblas) thus I can not even try if this works.

* upgraded version

* Added py prefix

* removed biopython version restriction

* directory with new py-prefixed name

* Delete old non-prefixed package

* Update var/spack/repos/builtin/packages/py-biobb-common/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
This commit is contained in:
Dani 2024-01-29 13:52:57 +01:00 committed by GitHub
parent 594069961a
commit b09d741aed
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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyBiobbCommon(PythonPackage):
"""Biobb_common is the base package required to use the biobb packages"""
pypi = "biobb_common/biobb_common-4.1.0.tar.gz"
maintainers("d-beltran")
# Versions
version("4.1.0", sha256="97637f359a3bb8ad79aca72b6c26f73fe2424845dc7f43005643971046e9d117")
# Dependencies
depends_on("py-setuptools", type="build")
depends_on("python@3.8:", type=("build", "run"))
depends_on("py-pyyaml", type=("build", "run"))
depends_on("py-requests", type=("build", "run"))
depends_on("py-biopython", type=("build", "run"))