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diamond: fix narrowing error. (#14064)

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* diamond: fix narrowing error

* diamond: fix patch

* diamond: add link to the patch source
This commit is contained in:
noguchi-k 2019-12-12 03:07:21 +09:00 committed by Adam J. Stewart
parent d4326038b9
commit b0a7c8487d
2 changed files with 22 additions and 0 deletions
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18
var/spack/repos/builtin/packages/diamond/fix_narrowing_error.patch Normal file
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@ -0,0 +1,18 @@
--- diamond-0.9.25/src/basic/score_matrix.cpp.org 2019-12-10 15:16:46.549126025 +0900
+++ diamond-0.9.25/src/basic/score_matrix.cpp 2019-12-10 15:17:08.721466092 +0900
@@ -36,7 +36,7 @@
const double INT2_MAX = std::numeric_limits<double>::max();
-const char DNA_scores[5 * 5] = {
+const signed char DNA_scores[5 * 5] = {
2, -3, -3, -3, -3,
-3,2,-3,-3,-3,
-3,-3,2,-3,-3,
@@ -317,4 +317,4 @@
constants[3] = lambda;
constants[4] = K;
constants_ = constants;
-}
\ No newline at end of file
+}

4
var/spack/repos/builtin/packages/diamond/package.py
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@ -24,3 +24,7 @@ class Diamond(CMakePackage):
version('0.8.26', sha256='00d2be32dad76511a767ab8e917962c0ecc572bc808080be60dec028df45439f') version('0.8.26', sha256='00d2be32dad76511a767ab8e917962c0ecc572bc808080be60dec028df45439f')
depends_on('zlib') depends_on('zlib')
# fix error [-Wc++11-narrowing]
# Ref: https://github.com/bbuchfink/diamond/commit/155e076d662b0e9268e2b00bef6d33d90aede7ff
patch('fix_narrowing_error.patch')