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Andi and libdivsufsort (#4559)

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* andi: adding andi and libdivsufsort

* andi: adding andi and dependency libdivsufsort

* andi: adding andi and dependency libdivsufsort

* andi: fixing autotool dependency types

* andi: fixed whitespace to make flake8 compliant
This commit is contained in:
Audrey Thoma 2017-06-21 10:51:05 -05:00 committed by Adam J. Stewart
parent cb87edf230
commit b1fceb75d0
2 changed files with 77 additions and 0 deletions
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42
var/spack/repos/builtin/packages/andi/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Andi(AutotoolsPackage):
"""andi is used for for estimating the
evolutionary distance between closely related genomes."""
homepage = "https://github.com/EvolBioInf/andi"
url = "https://github.com/EvolBioInf/andi/archive/v0.10.tar.gz"
version('0.10', '3aaba7961798bb4aaa546baa44e469d8')
depends_on('m4', type='build')
depends_on('autoconf', type='build')
depends_on('automake', type='build')
depends_on('libtool', type='build')
depends_on('gsl')
depends_on('libdivsufsort')

35
var/spack/repos/builtin/packages/libdivsufsort/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the LICENSE file for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Libdivsufsort(CMakePackage):
"""libdivsufsort is a software library that implements a
lightweight suffix array construction algorithm."""
homepage = "https://github.com/y-256/libdivsufsort"
url = "https://github.com/y-256/libdivsufsort/archive/2.0.1.tar.gz"
version('2.0.1', 'a75c6be4715d3d659936f3a1ab8cb5c0')