r-*: remove odd devel versions

2024-12-28 14:59:58 -06:00 · 2024-12-28 14:59:58 -06:00 · b3f0c479df
commit b3f0c479df
parent d54b74a014
17 changed files with 8 additions and 16 deletions
--- a/var/spack/repos/builtin/packages/r-abadata/package.py
+++ b/var/spack/repos/builtin/packages/r-abadata/package.py
@ -19,7 +19,6 @@ class RAbadata(RPackage):

    bioc = "ABAData"

-    version("1.25.0", commit="ed9b1a21e084bff864025bada260cbf70d80d22b")
    version("1.24.0", commit="c4c42701f995ab8d5ede7f36ff06650493c82e36")
    version("1.20.0", commit="c08a841ffb54d6555eb80b90a7a8afe7e48201b3")
    version("1.14.0", commit="ed7460e7d2948684db69dd4b4f8e135af50198bd")
--- a/var/spack/repos/builtin/packages/r-abaenrichment/package.py
+++ b/var/spack/repos/builtin/packages/r-abaenrichment/package.py
@ -23,7 +23,6 @@ class RAbaenrichment(RPackage):

    bioc = "ABAEnrichment"

-    version("1.27.0", commit="7f29995375f536da5ff2a196f8eb7786d1d97acd")
    version("1.26.0", commit="33df9e162aec07e2aae92cc058cbfb33720ba4b4")
    version("1.24.0", commit="5d20752263ae8f18ea5f5a6cfbdd5921a0f236d7")
    version("1.20.0", commit="608433a0b07e6dd99915dc536a038d960f1be1d5")
--- a/var/spack/repos/builtin/packages/r-affycompatible/package.py
+++ b/var/spack/repos/builtin/packages/r-affycompatible/package.py
@ -17,7 +17,6 @@ class RAffycompatible(RPackage):

    bioc = "AffyCompatible"

-    version("1.59.0", commit="b32c462d12aaea248bb98c15978061331e54a290")
    version("1.58.0", commit="6508e72736371d353ec5f02d30caf8ffe39b342a")
    version("1.56.0", commit="37ea4bb885c791fb989f40092f3d0d2c57d35641")
    version("1.54.0", commit="fde7d86ccdb03c13c4838c18ac25477ffe6e0fe5")
--- a/var/spack/repos/builtin/packages/r-affyexpress/package.py
+++ b/var/spack/repos/builtin/packages/r-affyexpress/package.py
@ -14,7 +14,7 @@ class RAffyexpress(RPackage):

    bioc = "AffyExpress"

-    version("1.59.0", commit="c08fdf299c39cb63c6cdad8e232f2c68bd94e3c3")
+    version("1.58.0", commit="3b0f72dc19d923a87cc462673d933e58760a9cc9")
    version("1.56.0", commit="e07085833de2bbf81537410cad526d39f8a82478")
    version("1.50.0", commit="8b98703b63396df9692afb0e15b594658125cc96")
    version("1.48.0", commit="dbaed516b7529ef4f7588aafaf3c5f1d53a9bb92")
--- a/var/spack/repos/builtin/packages/r-affypdnn/package.py
+++ b/var/spack/repos/builtin/packages/r-affypdnn/package.py
@ -13,7 +13,8 @@ class RAffypdnn(RPackage):

    bioc = "affypdnn"

-    version("1.63.0", commit="f09cd8543d9da9fb8ca662e96bb0d62fdcdb6210")
+    version("1.62.0", commit="22a6e97303bd60c8b365b51c38e4312d5b7ee995")
+    version("1.60.0", commit="9f8998fa4405fbbaea6f7a7eb6d3c1b29c3f5e09")
    version("1.58.0", commit="83d8b6b0d9606845bd77dbf7164dd5b160f32ccf")
    version("1.56.0", commit="5fd9c5265fb895a1f646cf72e8d5169669d979f2")
    version("1.54.0", commit="ea971b1b9cc443695a6614bef92e8e116ee87d55")
--- a/var/spack/repos/builtin/packages/r-affyqcreport/package.py
+++ b/var/spack/repos/builtin/packages/r-affyqcreport/package.py
@ -14,7 +14,7 @@ class RAffyqcreport(RPackage):

    bioc = "affyQCReport"

-    version("1.71.0", commit="cded5df783a2c93734f52a31db185a392bfc057b")
+    version("1.70.0", commit="9e49c8c376d8b1d79981628920e5adc238bddeca")
    version("1.68.0", commit="34b42a16f87a90a595146f4a1802ed04f6bfccca")
    version("1.62.0", commit="92d4124b688b90a6a9b8a21ab9d13d92b368cee4")
    version("1.60.0", commit="d0c15b1c56fc1caf6f114877ea6c1b8483a0dcfa")
--- a/var/spack/repos/builtin/packages/r-alpine/package.py
+++ b/var/spack/repos/builtin/packages/r-alpine/package.py
@ -13,7 +13,6 @@ class RAlpine(RPackage):

    bioc = "alpine"

-    version("1.27.0", commit="c69321d373e9a46d0afeb1c9f185770bf3009e49")
    version("1.26.0", commit="1e317dbf2973eb4b6a3ffbf52bc0faacec76a616")
    version("1.24.0", commit="7e734d49881761cafaacea096ce757531b6bd522")
    version("1.22.0", commit="6107a82962f07e0434e93f261cd375eaaa171d91")
--- a/var/spack/repos/builtin/packages/r-alsace/package.py
+++ b/var/spack/repos/builtin/packages/r-alsace/package.py
@ -17,8 +17,8 @@ class RAlsace(RPackage):

    bioc = "alsace"

-    version("1.31.0", commit="71be42c81c4da92ebcc5180ccea1e7145319d0fb")
    version("1.30.0", commit="d0e09b283da2b4869d5d6e6801399676246bc5bc")
+    version("1.28.0", commit="03344a1f12a5c86e61a8d69b68d9d16c3ed07561")
    version("1.26.0", commit="40a76404acb1466723a78a55d87c67eec3e6f306")
    version("1.20.0", commit="47f1cf8daafc864e5e3418009f349ce85d6b0389")
    version("1.18.0", commit="c9fc43c7b441de43b14ef1be69926c4c4a566191")
--- a/var/spack/repos/builtin/packages/r-analysispageserver/package.py
+++ b/var/spack/repos/builtin/packages/r-analysispageserver/package.py
@ -14,7 +14,8 @@ class RAnalysispageserver(RPackage):

    bioc = "AnalysisPageServer"

-    version("1.23.0", commit="307d2d4a128d49e05473affc7567e5fb319b10b9")
+    version("1.22.0", commit="2a18bb215ccaef5da08ea4d0e37cfb591b9dc783")
+    version("1.20.0", commit="aafd0364f9f5d9778a36bda9f2c399360af4d8ad")
    version("1.18.1", commit="08bd85e872d3f2b0c1fa148cf30bcd2d1a29b630")
    version("1.16.0", commit="67b063523f80e2af1d26262367ff50f34e195174")
    version("1.14.0", commit="620c0ea1e129ddd1a0866e2c9d7c3fcf06a8baf4")
--- a/var/spack/repos/builtin/packages/r-assorthead/package.py
+++ b/var/spack/repos/builtin/packages/r-assorthead/package.py
@ -12,4 +12,3 @@ class RAssorthead(RPackage):
    bioc = "assorthead"

    version("1.0.1", commit="4aa44624adb6981c75db9f5e200114784f343e32")
-    version("1.1.9", commit="b9de4f460dcac95360ae124cfe6c551863213dc6")
--- a/var/spack/repos/builtin/packages/r-deseq/package.py
+++ b/var/spack/repos/builtin/packages/r-deseq/package.py
@ -15,7 +15,6 @@ class RDeseq(RPackage):

    bioc = "DESeq"

-    version("1.43.0", commit="ace59de6b3a8693aeaf295596a5ef85a2e9b4232")
    version("1.42.0", commit="da76bc64e8c4073b58eaf1c93aa4e89bec5c4e50")
    version("1.36.0", commit="db4af67b49d3bd8c321d19efbe9415cd2e4ddb7e")
    version("1.34.1", commit="e86f1b03a30bc02de4bfd4a0759af2f65cb48c62")
--- a/var/spack/repos/builtin/packages/r-exomecopy/package.py
+++ b/var/spack/repos/builtin/packages/r-exomecopy/package.py
@ -16,7 +16,6 @@ class RExomecopy(RPackage):

    bioc = "exomeCopy"

-    version("1.49.0", commit="7b27fb0b5b9bdcd95b435eafbc4a231b13e67542")
    version("1.48.0", commit="c418319e721b440272b551be91b965e928b8af65")
    version("1.46.0", commit="b282adb17fb05e1a940d068d27bfd9d4549a53e7")
    version("1.44.0", commit="2dd6598d5fb14d49f7a42e597284c7a929c0cd62")
--- a/var/spack/repos/builtin/packages/r-mergemaid/package.py
+++ b/var/spack/repos/builtin/packages/r-mergemaid/package.py
@ -21,7 +21,6 @@ class RMergemaid(RPackage):

    bioc = "MergeMaid"

-    version("2.61.0", commit="0a76820a27a94ca253bd44ee3a337bd5a29f50b4")
    version("2.56.0", commit="c510d1d85bb39476e8397b24c4bc127780a17686")
    version("2.54.0", commit="8e79bd2bd06b25138b3c5107681c89d714a3b194")
    version("2.52.0", commit="88a1ddfd9cdbe902ba40fae0f39ee5665ac33a74")
--- a/var/spack/repos/builtin/packages/r-rhtslib/package.py
+++ b/var/spack/repos/builtin/packages/r-rhtslib/package.py
@ -19,6 +19,7 @@ class RRhtslib(RPackage):
    version("3.2.0", commit="3add51cbc8ea3cde6876b91cdd6180bfcbffbf49")
    version("3.0.0", commit="1c89207b035dcd4b4a790beabc4462f969350ed2")
    version("2.4.1", commit="33bf5d13817274d2fe2bf9183f94523cb99de459")
+    version("2.2.0", commit="ac2e2a62f7fdf87f16e7722c60e7d3fc7e48e2ba")
    version("2.0.0", commit="1757333eb88625158505e5fa47840081110cf8a4")
    # There is a problem with the git repository where the commit for
    # version 1.28.0 pulls changes to a file that blocks checking out the
--- a/var/spack/repos/builtin/packages/r-rnaseqmap/package.py
+++ b/var/spack/repos/builtin/packages/r-rnaseqmap/package.py
@ -14,7 +14,6 @@ class RRnaseqmap(RPackage):

    bioc = "rnaSeqMap"

-    version("2.51.0", commit="104684a9c64e711ccbf503da955745f86c842ec9")
    version("2.48.0", commit="a8c515e518cebf571d1524c3a8a986ba7d1557db")
    version("2.42.0", commit="3a3a1030cc38d79d04536e0ab16114e4fa6721cf")
    version("2.40.1", commit="c122d645b3503fb1a061f5515e4f8cf2863b3ba3")
--- a/var/spack/repos/builtin/packages/r-scater/package.py
+++ b/var/spack/repos/builtin/packages/r-scater/package.py
@ -17,7 +17,6 @@ class RScater(RPackage):
    version("1.34.0", commit="08b5dc08b117cc7e2be90e370fe1fe5702af1156")
    version("1.32.1", commit="0ad51ab22776aa5249926535000557ad4fe28777")
    version("1.30.1", commit="27d0d22bfbdb4d4f7e8d9a57c4465bc322b326d4")
-    version("1.35.0", commit="7211adabdf57f98255d5d95f7d5b8ab6355567bb")
    version("1.28.0", commit="e654498c3fa9f769b794f840f230720333bd9555")
    version("1.26.0", commit="a548ddc8424e185bfb06f48bfc174071e69fc687")
    version("1.24.0", commit="013f0935a1a225139986ca5a3f0e9d08a1558153")
--- a/var/spack/repos/builtin/packages/r-simpleaffy/package.py
+++ b/var/spack/repos/builtin/packages/r-simpleaffy/package.py
@ -18,7 +18,6 @@ class RSimpleaffy(RPackage):

    license("Unlicense")

-    version("2.67.0", commit="facc802391213b374a404bfc0d6bb2ea916ec208")
    version("2.66.0", commit="902db69e4ea4b6d306f0c744d3be600f1418ebc9")
    version("2.60.0", commit="b32b5e7d5c65e43c10f98ab8684a1086a06d04f9")
    version("2.58.0", commit="70cf1199bad620f60eaa288279632110bb571200")