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augustus: explicitly depend on ncurses (#29597)

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Glenn Johnson 2022-03-21 09:18:19 -05:00 committed by GitHub
parent f2b123760c
commit b4ab4ddc27
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2 changed files with 2 additions and 1 deletions
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2
var/spack/repos/builtin/packages/augustus/bam2wig_Makefile.patch
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@ -17,7 +17,7 @@
- HTSERRHINT:=$(HTSERRHINT)"Check if HTSlib is installed and of version 1.10 or higher - see README.txt"
-endif
+INCLUDES=-I$(HTSLIBDIR)/include/htslib
+HTSLIBS=-L$(HTSLIBDIR)/lib -Wl,-rpath,$(HTSLIBDIR)/lib -lhts -lcurses -lm -lz -lpthread -lcurl -lssl -lcrypto -lbz2 -llzma
+HTSLIBS=-L$(HTSLIBDIR)/lib -Wl,-rpath,$(HTSLIBDIR)/lib -lhts -lncurses -lm -lz -lpthread -lcurl -lssl -lcrypto -lbz2 -llzma
CFLAGS:=-Wall -O2 $(CFLAGS)
CC?=gcc

1
var/spack/repos/builtin/packages/augustus/package.py
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@ -39,6 +39,7 @@ class Augustus(MakefilePackage):
depends_on('htslib')
depends_on('bcftools')
depends_on('samtools')
depends_on('ncurses')
depends_on('curl', when='@3.3.1:')
depends_on('sqlite', when='@3.4.0:')
depends_on('mysql-client', when='@3.4.0:')