trinity: adding version 2.15.1 (#37076)
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								var/spack/repos/builtin/packages/trinity/2.15.1.patch
									
									
									
									
									
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							| @@ -0,0 +1,11 @@ | ||||
| --- a/trinity-plugins/bamsifter/sift_bam_max_cov.cpp      2023-02-05 18:46:28.000000000 +0000 | ||||
| +++ b/trinity-plugins/bamsifter/sift_bam_max_cov.cpp      2023-04-20 22:25:49.785300259 +0000 | ||||
| @@ -2,7 +2,7 @@ | ||||
|  #include <stdio.h> | ||||
|  // #include <unistd.h> | ||||
|  #include <stdlib.h> | ||||
| -#include <string.h> | ||||
| +#include <string> | ||||
|  #include <cstring> | ||||
|  #include <getopt.h> | ||||
|  #include <stdint.h> | ||||
| @@ -22,6 +22,11 @@ class Trinity(MakefilePackage): | ||||
|     homepage = "https://trinityrnaseq.github.io/" | ||||
|     url = "https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.6.6.tar.gz" | ||||
| 
 | ||||
|     version( | ||||
|         "2.15.1.FULL", | ||||
|         sha256="ba37e5f696d3d54e8749c4ba439901a3e97e14a4314a5229d7a069ad7b1ee580", | ||||
|         url="https://github.com/trinityrnaseq/trinityrnaseq/releases/download/Trinity-v2.15.1/trinityrnaseq-v2.15.1.FULL.tar.gz", | ||||
|     ) | ||||
|     version( | ||||
|         "2.15.0.FULL", | ||||
|         sha256="d67de43e535e1173be75de98dcfbdab0bf67f814c9e465a44dfd056cefeb529d", | ||||
| @@ -87,6 +92,8 @@ class Trinity(MakefilePackage): | ||||
|     depends_on("r-argparse", type="run") | ||||
|     depends_on("r-sm", type="run") | ||||
| 
 | ||||
|     patch("2.15.1.patch", when="@2.15.1.FULL") | ||||
| 
 | ||||
|     def build(self, spec, prefix): | ||||
|         make() | ||||
|         make("trinity_essentials") | ||||
|   | ||||
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