trinity: adding version 2.15.1 (#37076)

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snehring 2023-05-08 10:32:05 -05:00 committed by GitHub
parent 273bccbccf
commit b605cd0151
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2 changed files with 18 additions and 0 deletions

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@ -0,0 +1,11 @@
--- a/trinity-plugins/bamsifter/sift_bam_max_cov.cpp 2023-02-05 18:46:28.000000000 +0000
+++ b/trinity-plugins/bamsifter/sift_bam_max_cov.cpp 2023-04-20 22:25:49.785300259 +0000
@@ -2,7 +2,7 @@
#include <stdio.h>
// #include <unistd.h>
#include <stdlib.h>
-#include <string.h>
+#include <string>
#include <cstring>
#include <getopt.h>
#include <stdint.h>

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@ -22,6 +22,11 @@ class Trinity(MakefilePackage):
homepage = "https://trinityrnaseq.github.io/"
url = "https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.6.6.tar.gz"
version(
"2.15.1.FULL",
sha256="ba37e5f696d3d54e8749c4ba439901a3e97e14a4314a5229d7a069ad7b1ee580",
url="https://github.com/trinityrnaseq/trinityrnaseq/releases/download/Trinity-v2.15.1/trinityrnaseq-v2.15.1.FULL.tar.gz",
)
version(
"2.15.0.FULL",
sha256="d67de43e535e1173be75de98dcfbdab0bf67f814c9e465a44dfd056cefeb529d",
@ -87,6 +92,8 @@ class Trinity(MakefilePackage):
depends_on("r-argparse", type="run")
depends_on("r-sm", type="run")
patch("2.15.1.patch", when="@2.15.1.FULL")
def build(self, spec, prefix):
make()
make("trinity_essentials")