trinity: adding version 2.15.1 (#37076)
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11
var/spack/repos/builtin/packages/trinity/2.15.1.patch
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11
var/spack/repos/builtin/packages/trinity/2.15.1.patch
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@ -0,0 +1,11 @@
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--- a/trinity-plugins/bamsifter/sift_bam_max_cov.cpp 2023-02-05 18:46:28.000000000 +0000
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+++ b/trinity-plugins/bamsifter/sift_bam_max_cov.cpp 2023-04-20 22:25:49.785300259 +0000
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@@ -2,7 +2,7 @@
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#include <stdio.h>
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// #include <unistd.h>
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#include <stdlib.h>
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-#include <string.h>
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+#include <string>
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#include <cstring>
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#include <getopt.h>
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#include <stdint.h>
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@ -22,6 +22,11 @@ class Trinity(MakefilePackage):
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homepage = "https://trinityrnaseq.github.io/"
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url = "https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.6.6.tar.gz"
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version(
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"2.15.1.FULL",
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sha256="ba37e5f696d3d54e8749c4ba439901a3e97e14a4314a5229d7a069ad7b1ee580",
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url="https://github.com/trinityrnaseq/trinityrnaseq/releases/download/Trinity-v2.15.1/trinityrnaseq-v2.15.1.FULL.tar.gz",
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)
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version(
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"2.15.0.FULL",
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sha256="d67de43e535e1173be75de98dcfbdab0bf67f814c9e465a44dfd056cefeb529d",
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@ -87,6 +92,8 @@ class Trinity(MakefilePackage):
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depends_on("r-argparse", type="run")
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depends_on("r-sm", type="run")
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patch("2.15.1.patch", when="@2.15.1.FULL")
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def build(self, spec, prefix):
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make()
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make("trinity_essentials")
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