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r-cner: new package (#7228)

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Yifan Zhu 2018-03-09 01:36:26 -06:00 committed by Massimiliano Culpo
parent 331f5f27eb
commit b6440fd10e
2 changed files with 59 additions and 0 deletions
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var/spack/repos/builtin/packages/r-cner/package.py Normal file
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class RCner(RPackage):
""""Large-scale identification and advanced visualization of sets of
conserved noncoding elements."""
homepage = "http://www.example.co://bioconductor.org/packages/CNEr/"
url = "https://git.bioconductor.org/packages/CNEr"
version('1.14.0', git='https://git.bioconductor.org/packages/CNEr', commit='b8634d65c51728c815127e22b45eba7c9b9db897')
depends_on('r-biostrings@2.33.4:', type=('build', 'run'))
depends_on('r-dbi@0.7:', type=('build', 'run'))
depends_on('r-rsqlite@0.11.4:', type=('build', 'run'))
depends_on('r-genomeinfodb@1.1.3:', type=('build', 'run'))
depends_on('r-genomicranges@1.23.16:', type=('build', 'run'))
depends_on('r-rtracklayer@1.25.5:', type=('build', 'run'))
depends_on('r-xvector@0.5.4:', type=('build', 'run'))
depends_on('r-genomicalignments@1.1.9:', type=('build', 'run'))
depends_on('r-s4vectors@0.13.13:', type=('build', 'run'))
depends_on('r-iranges@2.5.27:', type=('build', 'run'))
depends_on('r-readr@0.2.2:', type=('build', 'run'))
depends_on('r-biocgenerics', type=('build', 'run'))
depends_on('r-reshape2@1.4.1:', type=('build', 'run'))
depends_on('r-ggplot2@2.1.0:', type=('build', 'run'))
depends_on('r-powerlaw@0.60.3:', type=('build', 'run'))
depends_on('r-annotate@1.50.0:', type=('build', 'run'))
depends_on('r-go-db@3.3.0:', type=('build', 'run'))
depends_on('r-keggrest@1.14.0:', type=('build', 'run'))
depends_on('r-utils@2.3.0:', type=('build', 'run'))
depends_on('r@3.4.3:3.4.9', when='@1.14.0')

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var/spack/repos/builtin/packages/r-keggrest/package.py
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@ -37,8 +37,11 @@ class RKeggrest(RPackage):
url = "https://git.bioconductor.org/packages/KEGGREST"
list_url = homepage
version('1.18.1', git='https://git.bioconductor.org/packages/KEGGREST', commit='f6e6f1987e4db9d977a75609fab0cb710be2e2e4')
version('1.2.0', git='https://git.bioconductor.org/packages/KEGGREST', commit='ed48de0def57a909894e237fa4731c4a052d8849')
depends_on('r-httr', type=('build', 'run'))
depends_on('r-png', type=('build', 'run'))
depends_on('r-biostrings', type=('build', 'run'))
depends_on('r@3.4.0:3.4.9', when='@1.2.0')
depends_on('r@3.4.3:3.4.9', when='@1.18.1')