Added WPS package, cleaned up WRF package (#18711)

Co-authored-by: michael laufer <michael.laufer@toganetworks.com>

var/spack/repos/builtin/packages/wps/package.py

@@ -0,0 +1,102 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+import glob
+import tempfile
+
+
+class Wps(Package):
+    """The Weather Research and Forecasting Pre-Processing System (WPS)
+    """
+
+    homepage = "https://www.mmm.ucar.edu/weather-research-and-forecasting-model"
+    url      = "https://github.com/wrf-model/WPS/archive/v4.2.tar.gz"
+    maintainers = ['MichaelLaufer']
+
+    version('4.2', sha256='3e175d033355d3e7638be75bc7c0bc0de6da299ebd175a9bbc1b7a121acd0168')
+
+    # Serial variant recommended in WRF/WPS docs
+    variant('build_type', default='serial',
+            values=('serial', 'serial_NO_GRIB2', 'dmpar', 'dmpar_NO_GRIB2'))
+
+    # These patches deal with netcdf & netcdf-fortran being two diff things
+    patch('patches/4.2/arch.Config.pl.patch', when='@4.2')
+    patch('patches/4.2/arch.configure.defaults.patch', when='@4.2')
+    patch('patches/4.2/configure.patch', when='@4.2')
+    patch('patches/4.2/preamble.patch', when='@4.2')
+
+    # According to:
+    # http://www2.mmm.ucar.edu/wrf/users/docs/user_guide_v4/v4.0/users_guide_chap2.html#_Required_Compilers_and_1
+    # Section: "Required/Optional Libraries to Download"
+    depends_on('wrf')
+    depends_on('netcdf-c')
+    depends_on('netcdf-fortran')
+    # build script use csh
+    depends_on('tcsh', type=('build'))
+
+    # this fixes that for csh install scripts
+    depends_on('time', type=('build'))
+    depends_on('m4', type='build')
+    depends_on('libtool', type='build')
+    depends_on('jasper')
+    phases = ['configure', 'build', 'install']
+
+    def setup_build_environment(self, env):
+        env.set('WRF_DIR', self.spec['wrf'].prefix)
+        env.set('NETCDF', self.spec['netcdf-c'].prefix)
+        # This gets used via the applied patch files
+        env.set('NETCDFF', self.spec['netcdf-fortran'].prefix)
+        env.set('JASPERINC', self.spec['jasper'].prefix.include)
+        env.set('JASPERLIB', self.spec['jasper'].prefix.lib)
+
+        if self.spec.satisfies('%gcc@10:'):
+            args = '-w -O2 -fallow-argument-mismatch -fallow-invalid-boz'
+            env.set('FCFLAGS', args)
+            env.set('FFLAGS', args)
+
+    def patch(self):
+        # Let's not assume csh is intalled in bin
+        files = glob.glob('*.csh')
+
+        filter_file('^#!/bin/csh -f', '#!/usr/bin/env csh', *files)
+        filter_file('^#!/bin/csh', '#!/usr/bin/env csh', *files)
+
+    def configure(self, spec, prefix):
+        build_opts = {"gcc":   {"serial": '1',
+                                "serial_NO_GRIB2": '2',
+                                "dmpar":           '3',
+                                "dmpar_NO_GRIB2":  '4'},
+                      "intel": {"serial":          '17',
+                                "serial_NO_GRIB2": '18',
+                                "dmpar":           '19',
+                                "dmpar_NO_GRIB2":  '20'},
+                      "pgi":   {"serial":          '5',
+                                "serial_NO_GRIB2": '6',
+                                "dmpar":           '7',
+                                "dmpar_NO_GRIB2":  '8'},
+                      }
+
+        try:
+            compiler_opts = build_opts[self.spec.compiler.name]
+        except KeyError:
+            raise InstallError("Compiler not recognized nor supported.")
+
+        # Spack already makes sure that the variant value is part of the set.
+        build_type = compiler_opts[spec.variants['build_type'].value]
+
+        with tempfile.TemporaryFile(mode='w') as fp:
+            fp.write(build_type + '\n')
+            fp.seek(0)
+            Executable('./configure')(input=fp)
+
+    def build(self, spec, prefix):
+        csh = which('csh')
+        csh('./compile')
+
+    def install(self, spec, prefix):
+        # Copy all of WPS staging dir to install dir
+        install_tree('.', prefix)

var/spack/repos/builtin/packages/wps/patches/4.2/arch.Config.pl.patch

@@ -0,0 +1,33 @@
+diff --git a/arch/Config.pl b/arch/Config.pl
+index 89f86bf..e08bc75 100644
+--- a/arch/Config.pl
++++ b/arch/Config.pl
+@@ -9,6 +9,7 @@
+ $sw_perl_path   = perl;
+ $sw_wrf_path   = "<SET ME>";
+ $sw_netcdf_path = "";
++$sw_netcdff_path = "";
+ $sw_netcdff_lib = "";
+ $sw_phdf5_path  = ""; 
+ $sw_jasperlib_path = ""; 
+@@ -40,7 +41,11 @@ while(substr( $ARGV[0], 0, 1 ) eq "-")
+     }
+     if(substr( $ARGV[0], 1, 8 ) eq "netcdff=")
+     {
+-        $sw_netcdff_lib = substr( $ARGV[0], 9);
++        $sw_netcdff_path = substr( $ARGV[0], 9);
++    }
++    if(substr( $ARGV[0], 1, 11 ) eq "netcdfflib=")
++    {
++        $sw_netcdff_lib = substr( $ARGV[0], 12);
+     }
+     if(substr( $ARGV[0], 1, 6 ) eq "phdf5=")
+     {
+@@ -167,6 +172,7 @@ while(<CONFIGURE_DEFAULTS>)
+     {
+         $_ =~ s/CONFIGURE_PERL_PATH/$sw_perl_path/g;
+         $_ =~ s/CONFIGURE_NETCDF_PATH/$sw_netcdf_path/g;
++        $_ =~ s/CONFIGURE_NETCDFF_PATH/$sw_netcdff_path/g;
+         $_ =~ s/CONFIGURE_LDFLAGS/$sw_ldflags/g;
+         $_ =~ s/CONFIGURE_COMPILEFLAGS/$sw_compileflags/g;
+         $_ =~ s/CONFIGURE_COMP_L/$sw_compL/g;

var/spack/repos/builtin/packages/wps/patches/4.2/arch.configure.defaults.patch

@@ -0,0 +1,356 @@
+diff --git a/arch/configure.defaults b/arch/configure.defaults
+index 2c66a47..1d78146 100644
+--- a/arch/configure.defaults
++++ b/arch/configure.defaults
+@@ -11,8 +11,8 @@ SFC                 = xlf2003_r
+ CC                  = mpicc
+ SCC                 = xlc_r
+ LD                  = $(FC)
+-FFLAGS              = -qfree=f90 -qufmt=be
+-F77FLAGS            = -qfixed -qufmt=be
++FFLAGS              = $(FCFLAGS) -qfree=f90 -qufmt=be
++F77FLAGS            = $(FCFLAGS) -qfixed -qufmt=be
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+ CFLAGS              =
+@@ -32,8 +32,8 @@ SFC                 = pgfortran
+ CC                  = mpicc
+ SCC                 = pgcc
+ LD                  = $(FC)
+-FFLAGS              = -Mfree -byteswapio
+-F77FLAGS            = -Mfixed -byteswapio
++FFLAGS              = $(FCFLAGS) -Mfree -byteswapio
++F77FLAGS            = $(FCFLAGS) -Mfixed -byteswapio
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+ CFLAGS              =
+@@ -56,8 +56,8 @@ FC                  = blrts_xlf90
+ SFC                 = blrts_xlf90
+ CC                  = blrts_xlc
+ LD                  = $(FC)
+-FFLAGS              = -qfree=f90 $(MPI_INC)
+-F77FLAGS            = -qfixed $(MPI_INC)
++FFLAGS              = $(FCFLAGS) -qfree=f90 $(MPI_INC)
++F77FLAGS            = $(FCFLAGS) -qfixed $(MPI_INC)
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = 
+ SCC                 = cc
+@@ -85,8 +85,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -Mfree -byteswapio -O
+-F77FLAGS            = -Mfixed -byteswapio -O
++FFLAGS              = $(FCFLAGS) -Mfree -byteswapio -O
++F77FLAGS            = $(FCFLAGS) -Mfixed -byteswapio -O
+ FCSUFFIX            =
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+@@ -109,8 +109,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC 
+ LD                  = $(FC)
+-FFLAGS              = -FR -convert big_endian
+-F77FLAGS            = -FI -convert big_endian
++FFLAGS              = $(FCFLAGS) -FR -convert big_endian
++F77FLAGS            = $(FCFLAGS) -FI -convert big_endian
+ FCSUFFIX            =
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+@@ -133,8 +133,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC 
+ LD                  = $(FC)
+-FFLAGS              = -ffree-form -O -fendian=big
+-F77FLAGS            = -ffixed-form -O -fendian=big
++FFLAGS              = $(FCFLAGS) -ffree-form -O -fendian=big
++F77FLAGS            = $(FCFLAGS) -ffixed-form -O -fendian=big
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = 
+@@ -157,8 +157,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC 
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -ffree-form -O -fconvert=big-endian -frecord-marker=4
+-F77FLAGS            = -ffixed-form -O -fconvert=big-endian -frecord-marker=4
++FFLAGS              = $(FCFLAGS) -ffree-form -O -fconvert=big-endian -frecord-marker=4
++F77FLAGS            = $(FCFLAGS) -ffixed-form -O -fconvert=big-endian -frecord-marker=4
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+@@ -180,8 +180,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC 
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -ffree-form -O -fconvert=big-endian -frecord-marker=4
+-F77FLAGS            = -ffixed-form -O -fconvert=big-endian -frecord-marker=4
++FFLAGS              = $(FCFLAGS) -ffree-form -O -fconvert=big-endian -frecord-marker=4
++F77FLAGS            = $(FCFLAGS) -ffixed-form -O -fconvert=big-endian -frecord-marker=4
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+@@ -205,8 +205,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC) 
+-FFLAGS              = -Mfree -byteswapio -O
+-F77FLAGS            = -Mfixed -byteswapio -O
++FFLAGS              = $(FCFLAGS) -Mfree -byteswapio -O
++F77FLAGS            = $(FCFLAGS) -Mfixed -byteswapio -O
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = 
+@@ -231,8 +231,8 @@ DM_CC               = $(SCC) -I$(MPI_ROOT)/include
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC) 
+-FFLAGS              = -Mfree -byteswapio -O
+-F77FLAGS            = -Mfixed -byteswapio -O
++FFLAGS              = $(FCFLAGS) -Mfree -byteswapio -O
++F77FLAGS            = $(FCFLAGS) -Mfixed -byteswapio -O
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -L$(MPI_ROOT)/lib -lmpi
+@@ -255,8 +255,8 @@ DM_CC               = mpicc -cc=pathcc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -freeform -fno-second-underscore -byteswapio -O
+-F77FLAGS            = -byteswapio -fno-second-underscore -O
++FFLAGS              = $(FCFLAGS) -freeform -fno-second-underscore -byteswapio -O
++F77FLAGS            = $(FCFLAGS) -byteswapio -fno-second-underscore -O
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = 
+@@ -279,8 +279,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -FR -convert big_endian
+-F77FLAGS            = -FI -convert big_endian
++FFLAGS              = $(FCFLAGS) -FR -convert big_endian
++F77FLAGS            = $(FCFLAGS) -FI -convert big_endian
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = 
+@@ -303,8 +303,8 @@ DM_CC               = $(SCC) -I$(MPI_ROOT)/include
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -FR -convert big_endian
+-F77FLAGS            = -FI -convert big_endian
++FFLAGS              = $(FCFLAGS) -FR -convert big_endian
++F77FLAGS            = $(FCFLAGS) -FI -convert big_endian
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -L$(MPI_ROOT)/lib -lmpi
+@@ -327,8 +327,8 @@ DM_CC               = mpcc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -FR -convert big_endian
+-F77FLAGS            = -FI -convert big_endian
++FFLAGS              = $(FCFLAGS) -FR -convert big_endian
++F77FLAGS            = $(FCFLAGS) -FI -convert big_endian
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = 
+@@ -351,8 +351,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -Mfree -byteswapio -O2
+-F77FLAGS            = -Mfixed -byteswapio -O2
++FFLAGS              = $(FCFLAGS) -Mfree -byteswapio -O2
++F77FLAGS            = $(FCFLAGS) -Mfixed -byteswapio -O2
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -g
+@@ -376,8 +376,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -Mfree -byteswapio -O2
+-F77FLAGS            = -Mfixed -byteswapio -O2
++FFLAGS              = $(FCFLAGS) -Mfree -byteswapio -O2
++F77FLAGS            = $(FCFLAGS) -Mfixed -byteswapio -O2
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -g
+@@ -401,8 +401,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -FR -convert big_endian
+-F77FLAGS            = -FI -convert big_endian
++FFLAGS              = $(FCFLAGS) -FR -convert big_endian
++F77FLAGS            = $(FCFLAGS) -FI -convert big_endian
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = 
+@@ -425,8 +425,8 @@ DM_CC               = mpicc -cc=gcc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -ffree-form -g -fendian=big
+-F77FLAGS            = -ffixed-form -g -fendian=big
++FFLAGS              = $(FCFLAGS) -ffree-form -g -fendian=big
++F77FLAGS            = $(FCFLAGS) -ffixed-form -g -fendian=big
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -g
+@@ -450,8 +450,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -ffree-form -O -fconvert=big-endian -frecord-marker=4
+-F77FLAGS            = -ffixed-form -O -fconvert=big-endian -frecord-marker=4
++FFLAGS              = $(FCFLAGS) -ffree-form -O -fconvert=big-endian -frecord-marker=4
++F77FLAGS            = $(FCFLAGS) -ffixed-form -O -fconvert=big-endian -frecord-marker=4
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+@@ -475,8 +475,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -ffree-form -O -fconvert=big-endian -frecord-marker=4
+-F77FLAGS            = -ffixed-form -O -fconvert=big-endian -frecord-marker=4
++FFLAGS              = $(FCFLAGS) -ffree-form -O -fconvert=big-endian -frecord-marker=4
++F77FLAGS            = $(FCFLAGS) -ffixed-form -O -fconvert=big-endian -frecord-marker=4
+ FCSUFFIX            =
+ FNGFLAGS            = $(FFLAGS)
+ # For a WRF OpenMP build, add the gomp library for WPS
+@@ -505,8 +505,8 @@ DM_CC               = mpicc -cc=$(SCC)
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -qfree
+-F77FLAGS            = -qfixed
++FFLAGS              = $(FCFLAGS) -qfree
++F77FLAGS            = $(FCFLAGS) -qfixed
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS) -qextname
+ LDFLAGS             = -Wl,-stack_size,10000000,-stack_addr,0xc000000
+@@ -531,8 +531,8 @@ SFC                 = xlf90_r
+ SCC                 = gcc-3.3
+ DM_FC               = mpif90 -f90=$(SFC)
+ DM_CC               = mpicc -cc=$(SCC)
+-FFLAGS              = -qfree
+-F77FLAGS            = -qfixed
++FFLAGS              = $(FCFLAGS) -qfree
++F77FLAGS            = $(FCFLAGS) -qfixed
+ FNGFLAGS            = $(FFLAGS) -qextname
+ LDFLAGS             = -Wl,-stack_size,10000000,-stack_addr,0xc0000000 -L/usr/lib -lSystemStubs
+ FC                  = CONFIGURE_FC
+@@ -555,8 +555,8 @@ DM_CC               = mpicc -cc=gcc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -ffree-form -g -fno-second-underscore
+-F77FLAGS            = -ffixed-form -g -fno-second-underscore
++FFLAGS              = $(FCFLAGS) -ffree-form -g -fno-second-underscore
++F77FLAGS            = $(FCFLAGS) -ffixed-form -g -fno-second-underscore
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -g
+@@ -584,8 +584,8 @@ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+ AR                  = ar
+-FFLAGS              = -qfree=f90
+-F77FLAGS            = -qfixed
++FFLAGS              = $(FCFLAGS) -qfree=f90
++F77FLAGS            = $(FCFLAGS) -qfixed
+ FCSUFFIX            = -qsuffix=f=f90
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+@@ -607,8 +607,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_FC
+ LD                  = $(FC)
+-FFLAGS              = -free -convert big_endian
+-F77FLAGS            = -convert big_endian
++FFLAGS              = $(FCFLAGS) -free -convert big_endian
++F77FLAGS            = $(FCFLAGS) -convert big_endian
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =    
+ CFLAGS              =    
+@@ -629,8 +629,8 @@ DM_CC               = mpicc -cc=$(SCC)
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -ffree-form -g -fno-second-underscore
+-F77FLAGS            = -ffixed-form -g -fno-second-underscore
++FFLAGS              = $(FCFLAGS) -ffree-form -g -fno-second-underscore
++F77FLAGS            = $(FCFLAGS) -ffixed-form -g -fno-second-underscore
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -g
+@@ -659,8 +659,8 @@ DM_CC               = pgcc -Mmpi=msmpi
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -Mfree -g
+-F77FLAGS            = -Mfixed -g
++FFLAGS              = $(FCFLAGS) -Mfree -g
++F77FLAGS            = $(FCFLAGS) -Mfixed -g
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -g
+@@ -682,8 +682,8 @@ DM_CC               = mpicc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -freeform -64
+-F77FLAGS            = -64
++FFLAGS              = $(FCFLAGS) -freeform -64
++F77FLAGS            = $(FCFLAGS) -64
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = -64
+@@ -712,8 +712,8 @@ DM_CC               = icc -lmpi
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -FR -convert big_endian
+-F77FLAGS            = -FI -convert big_endian
++FFLAGS              = $(FCFLAGS) -FR -convert big_endian
++F77FLAGS            = $(FCFLAGS) -FI -convert big_endian
+ FCSUFFIX            = 
+ FNGFLAGS            = 
+ LDFLAGS             = 
+@@ -736,8 +736,8 @@ DM_CC               =
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -free
+-F77FLAGS            = 
++FFLAGS              = $(FCFLAGS) -free
++F77FLAGS            = $(FCFLAGS) 
+ FCSUFFIX            = 
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             = 
+@@ -759,8 +759,8 @@ DM_CC               = cc
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -N255 -f free -h byteswapio
+-F77FLAGS            = -N255 -f fixed -h byteswapio
++FFLAGS              = $(FCFLAGS) -N255 -f free -h byteswapio
++F77FLAGS            = $(FCFLAGS) -N255 -f fixed -h byteswapio
+ FCSUFFIX            =
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =
+@@ -783,8 +783,8 @@ DM_CC               = $(SCC)
+ FC                  = CONFIGURE_FC
+ CC                  = CONFIGURE_CC
+ LD                  = $(FC)
+-FFLAGS              = -FR -convert big_endian
+-F77FLAGS            = -FI -convert big_endian
++FFLAGS              = $(FCFLAGS) -FR -convert big_endian
++F77FLAGS            = $(FCFLAGS) -FI -convert big_endian
+ FCSUFFIX            =
+ FNGFLAGS            = $(FFLAGS)
+ LDFLAGS             =

var/spack/repos/builtin/packages/wps/patches/4.2/configure.patch

@@ -0,0 +1,42 @@
+diff --git a/configure b/configure
+index d95c5b6..e299dc2 100755
+--- a/configure
++++ b/configure
+@@ -117,11 +117,13 @@ fi
+ 
+ if [ -n "$NETCDF" ] ; then
+   echo "Will use NETCDF in dir: $NETCDF"
++  echo "Will use NETCDFF in dir: $NETCDFF"
+   # for 3.6.2 and greater there might be a second library, libnetcdff.a .  Check for this and use
+   # if available
+-  NETCDFF=" "
+-  if [ -f "$NETCDF/lib/libnetcdff.a" ] ; then
+-    NETCDFF="-lnetcdff"
++  NETCDFF="$NETCDFF"
++  export NETCDFF
++  if [ -f "$NETCDFF/lib/libnetcdff.a" ] ; then
++    NETCDFF_LIB="-lnetcdff"
+   fi
+ else
+   echo "Will configure for use without NetCDF"
+@@ -190,7 +192,7 @@ if [ $wrf_dir = "none" ]; then
+ fi
+ 
+ # Found perl, so proceed with configuration
+-perl arch/Config.pl -perl=$PERL -netcdf=$NETCDF -netcdff=$NETCDFF -os=$os -mach=$mach -wrfdir=$wrf_dir
++perl arch/Config.pl -perl=$PERL -netcdf=$NETCDF -netcdff=$NETCDFF -netcdfflib=$NETCDFF_LIB -os=$os -mach=$mach -wrfdir=$wrf_dir
+ 
+ 
+ #Checking cross-compiling capability for some particular environment 
+@@ -356,9 +358,9 @@ cat > fort_netcdf.f <<EOF
+         end program
+ EOF
+     FFLAGS=`grep ^FFLAGS configure.wps | cut -d"=" -f2-`
+-    cp $NETCDF/include/netcdf.inc .
++    cp $NETCDFF/include/netcdf.inc .
+     FC=`grep ^SFC configure.wps | cut -d"=" -f2-`
+-    $FC ${FFLAGS} fort_netcdf.f -o fort_netcdf -L${NETCDF}/lib $NETCDFF -lnetcdf > /dev/null 2>&1 
++    $FC ${FFLAGS} fort_netcdf.f -o fort_netcdf -L${NETCDF}/lib -L${NETCDFF}/lib ${NETCDFF_LIB} -lnetcdf > /dev/null 2>&1
+     if [ -f "fort_netcdf" ] ; then
+       ./fort_netcdf > /dev/null 2>&1
+       if [ $? = 0 ]; then

var/spack/repos/builtin/packages/wps/patches/4.2/preamble.patch

@@ -0,0 +1,21 @@
+diff --git a/arch/preamble b/arch/preamble
+index f5d316f..cb0d4a0 100644
+--- a/arch/preamble
++++ b/arch/preamble
+@@ -39,13 +39,14 @@ WRF_INCLUDE     =       -I$(WRF_DIR)/external/io_netcdf \
+                         -I$(WRF_DIR)/external/io_grib1 \
+                         -I$(WRF_DIR)/external/io_int \
+                         -I$(WRF_DIR)/inc \
+-                        -I$(NETCDF)/include
++                        -I$(NETCDF)/include \
++                        -I$(NETCDFF)/include
+ 
+ WRF_LIB         =       -L$(WRF_DIR)/external/io_grib1 -lio_grib1 \
+                         -L$(WRF_DIR)/external/io_grib_share -lio_grib_share \
+                         -L$(WRF_DIR)/external/io_int -lwrfio_int \
+                         -L$(WRF_DIR)/external/io_netcdf -lwrfio_nf \
+-                        -L$(NETCDF)/lib CONFIGURE_NETCDFF_LIB -lnetcdf
++                        -L$(NETCDFF)/lib -L$(NETCDF)/lib CONFIGURE_NETCDFF_LIB -lnetcdf
+ 
+ 
+ #### Architecture specific settings ####

var/spack/repos/builtin/packages/wrf/package.py

@@ -17,6 +17,7 @@ class Wrf(Package):
 
     homepage = "https://www.mmm.ucar.edu/weather-research-and-forecasting-model"
     url      = "https://github.com/wrf-model/WRF/archive/v4.2.tar.gz"
+    maintainers = ['MichaelLaufer']
 
     version('4.2', sha256='c39a1464fd5c439134bbd39be632f7ce1afd9a82ad726737e37228c6a3d74706')
     version('4.0', sha256='a5b072492746f96a926badda7e6b44cb0af26695afdd6c029a94de5e1e5eec73')
@@ -61,7 +62,7 @@ class Wrf(Package):
     # http://www2.mmm.ucar.edu/wrf/users/docs/user_guide_v4/v4.0/users_guide_chap2.html#_Required_Compilers_and_1
     # Section: "Required/Optional Libraries to Download"
     depends_on('parallel-netcdf', when='+pnetcdf')
-    depends_on('netcdf-c+parallel-netcdf')
+    depends_on('netcdf-c')
     depends_on('netcdf-fortran')
     depends_on('jasper')
     depends_on('libpng')
@@ -74,27 +75,24 @@ class Wrf(Package):
     # time is not installed on all systems b/c bash provides it
     # this fixes that for csh install scripts
     depends_on('time', type=('build'))
-
-    depends_on('autoconf', type='build')
-    depends_on('automake', type='build')
     depends_on('m4', type='build')
     depends_on('libtool', type='build')
     phases = ['configure', 'build', 'install']
 
-    def setup_build_environment(self, spack_env):
+    def setup_build_environment(self, env):
-        spack_env.set('NETCDF', self.spec['netcdf-c'].prefix)
+        env.set('NETCDF', self.spec['netcdf-c'].prefix)
         if '+pnetcdf' in self.spec:
-            spack_env.set('PNETCDF', self.spec['parallel-netcdf'].prefix)
+            env.set('PNETCDF', self.spec['parallel-netcdf'].prefix)
         # This gets used via the applied patch files
-        spack_env.set('NETCDFF', self.spec['netcdf-fortran'].prefix)
+        env.set('NETCDFF', self.spec['netcdf-fortran'].prefix)
-        spack_env.set('PHDF5', self.spec['hdf5'].prefix)
+        env.set('PHDF5', self.spec['hdf5'].prefix)
-        spack_env.set('JASPERINC', self.spec['jasper'].prefix.include)
+        env.set('JASPERINC', self.spec['jasper'].prefix.include)
-        spack_env.set('JASPERLIB', self.spec['jasper'].prefix.lib)
+        env.set('JASPERLIB', self.spec['jasper'].prefix.lib)
 
         if self.spec.satisfies('%gcc@10:'):
             args = '-w -O2 -fallow-argument-mismatch -fallow-invalid-boz'
-            spack_env.set('FCFLAGS', args)
+            env.set('FCFLAGS', args)
-            spack_env.set('FFLAGS', args)
+            env.set('FFLAGS', args)
 
     def patch(self):
         # Let's not assume csh is intalled in bin
@@ -144,7 +142,5 @@ def build(self, spec, prefix):
             spec.variants['compile_type'].value)
 
     def install(self, spec, prefix):
-        mkdir(prefix.bin)
+        # Save all install files as many are needed for WPS and WRF runs
-        install('./main/wrf.exe', prefix.bin)
+        install_tree('.', prefix)
-        install('./main/ndown.exe', prefix.bin)
-        install('./main/real.exe', prefix.bin)